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Homology
BLAST of mRNA_E_fasciculatus_S2_contig6911.15049.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H5_9PHAE) HSP 1 Score: 546 bits (1407), Expect = 1.750e-191 Identity = 324/391 (82.86%), Postives = 333/391 (85.17%), Query Frame = 1
Query: 1 MWPRRERTSSSGRGTDFRPALAPGTADSGSXXXXXXXXXXXXXX------------STVPAVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREXXXXXXXXXXXXXXXXXXXXXXXTPADGAAEASPAA---RRHSLGRGRSKRFSTETLRPSSGAWSHRNGLPAHRKAASFSGGLPRAGRGSGGSVGGAERHGYLSFSEVQVDEEDDGDDCVGHNSSSTASSTSSKFGREMPHRRRKKRARAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWIKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSNDSSVGGTGGHEASGLRLSGIPAA 1128
MWPRRE S SGRGTD RPALA GT DSG+XXXXXXXXXXXXXX ST+ AVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAARE XXXXXXXXXXXXXXX DGA EASPAA RRHSLG+GRSKRF T++LRPSSG W HRNGLPAH+KAASFSGG+PRAGR SGGSVGGAERHGYLSFSEVQVDEEDD DD +GH FGREMPHRRRKKR RAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDP LPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVW+KCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVS DSSVG TGGHEASG RL GIPAA
Sbjct: 78 MWPRRESCSRSGRGTDCRPALALGTVDSGNXXXXXXXXXXXXXXXXXXXXXXXXXXSTITAVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREQAAARXXXXXXXXXXXXXXX-----TDGAPEASPAAAMARRHSLGQGRSKRFPTDSLRPSSGVWDHRNGLPAHKKAASFSGGVPRAGRESGGSVGGAERHGYLSFSEVQVDEEDDTDDRLGHXXXXXXXXXXXXFGREMPHRRRKKRERAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPNLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSYDSSVGATGGHEASGPRLPGIPAA 463
BLAST of mRNA_E_fasciculatus_S2_contig6911.15049.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS79_ECTSI) HSP 1 Score: 370 bits (950), Expect = 1.620e-125 Identity = 224/296 (75.68%), Postives = 231/296 (78.04%), Query Frame = 1
Query: 250 MELFDTNDVVAAAREXXXXXXXXXXXXXXXXXXXXXXXTPADGAAEASPAA---RRHSLGRGRSKRFSTETLRPSSGAWSHRNGLPAHRKAASFSGGLPRAGRGSGGSVGGAERHGYLSFSEVQVDEEDDGDDCVGHNSSSTASSTSSKFGREMPHRRRKKRARAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWIKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSNDSSVGGTGGHEASGLRLSGIPAA 1128
MELFDTNDVVAAARE XXXXXXXXXXXXXXXXXXXXX EASPAA RRHSLGRGRSKR+ST++LRPSSGAW HRNGLPAH+KAASFSGG+PRAGRGSGGSVGGAERHGYLSFSEVQ EHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVW+KCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSN+SSVGGTGGH ASG RLSGIPAA
Sbjct: 1 MELFDTNDVVAAAREQXXXXXXXXXXXXXXXXXXXXX--------EASPAAAMARRHSLGRGRSKRYSTDSLRPSSGAWDHRNGLPAHKKAASFSGGVPRAGRGSGGSVGGAERHGYLSFSEVQ--------------------------------------------------EHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSNNSSVGGTGGHGASGPRLSGIPAA 238
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1162 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000860.1 |
| Cds size | 1131 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842348.6845953-UTR-E_fasciculatus_S2_contig6911:1349..1380 | 1696842348.6845953-UTR-E_fasciculatus_S2_contig6911:1349..1380 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig6911 1350..1380 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842348.6984718-CDS-E_fasciculatus_S2_contig6911:1380..1617 | 1696842348.6984718-CDS-E_fasciculatus_S2_contig6911:1380..1617 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6911 1381..1617 - |
| 1696842348.7110753-CDS-E_fasciculatus_S2_contig6911:1930..2212 | 1696842348.7110753-CDS-E_fasciculatus_S2_contig6911:1930..2212 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6911 1931..2212 - |
| 1696842348.724834-CDS-E_fasciculatus_S2_contig6911:2454..3034 | 1696842348.724834-CDS-E_fasciculatus_S2_contig6911:2454..3034 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6911 2455..3034 - |
| 1696842348.7388558-CDS-E_fasciculatus_S2_contig6911:6734..6766 | 1696842348.7388558-CDS-E_fasciculatus_S2_contig6911:6734..6766 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6911 6735..6766 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6911.15049.1 >prot_E_fasciculatus_S2_contig6911.15049.1 ID=prot_E_fasciculatus_S2_contig6911.15049.1|Name=mRNA_E_fasciculatus_S2_contig6911.15049.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=377bp
MWPRRERTSSSGRGTDFRPALAPGTADSGSNNNNNNNNNNSNSKSTVPAV EGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREQA AARNSNKTAAAAAAATATAAATPADGAAEASPAARRHSLGRGRSKRFSTE TLRPSSGAWSHRNGLPAHRKAASFSGGLPRAGRGSGGSVGGAERHGYLSF SEVQVDEEDDGDDCVGHNSSSTASSTSSKFGREMPHRRRKKRARAWKLFL AVMQEHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIP LRDVLDVERRGKVVWIKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCG VSNDSSVGGTGGHEASGLRLSGIPAA* back to topmRNA from alignment at E_fasciculatus_S2_contig6911:1350..6766- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig6911.15049.1 ID=mRNA_E_fasciculatus_S2_contig6911.15049.1|Name=mRNA_E_fasciculatus_S2_contig6911.15049.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6911:1350..6766- (Ectocarpus fasciculatus EfasUO2) ATGTGGCCCCGACGCGAAAGGACCAGCAGCAGGTTTGTTGACAGCAGCAG
TCGGTCAGCACGAAACAAGCAAGCAAGCAAACTGCTGTTCCTCGTTACAA
CAAACAGATGCAGCAGAGAGCGAGTTTCGCATCTTGAATATTTCCACACC
GCGGGGTTGTTTCCCCGGCCCGTCTTGCGGAGTTTGCGCCCTGAGACCTT
GCCTGCGTCAGTGTGTATCGCTTGTGAGCCGTGTAGCGGGTGTTCCCCGG
GGGGGGGGAGCGGAGAGGCAAAAAACGGACAAAAAGGATTCCTCATGCCC
CGTCGAAGAAGAAAACGCAAGAGAGAGCTCCGCTCTTGTAGACTACGCAC
ACAGCGATCTCAACAGCCCGTTCACCGTTCAGGCACACACATACGCACGT
GATAGGTAGGCCATGTTTGCGTGCGTGCGTTACAGCAGTGCCTCCTCGCC
GTGACGTTCCTTCTTGGGTGCTACAGTAGTGATGTTTCCCAGTGTTGCGT
CTTTAGCTGTGCGCGCGAGTCTCAGATGAATGAAGGGCCTGATCCGCTGC
GCTCTGCCATTATTGCGGGTTTATTCGCGCAAAACAGCTGATCCCGCAAA
AAAATACAGCTTGCAGGAAGCTGCTTGATCCCCTGATGATGCTGCTGCTG
CCGTGCTCAACATTTTCATTTTTTCGGTGCATGTAAGCGCCTACCCTGGG
GTAACCCCAGCCGTAGCAGTAAGTATTTTTGTTCCCACAGCAGGATTGAT
TCAATGTGCTTTCTATAAAGATCTACTTGCAGCAGAGTCTTGAGCTGCCT
TTTTAAAACTTGGCTGTGGGGAAAGAGCTCGTTTTTCAAATCTCGCTCTC
CCTGTATGCATATGCATATGTACATCTTGCTATGAAGTGAACGCTGTCAC
TGCTGTATGCGGCGGCAACAGCGAGCGGAATTTCCGTTTTTTCGGGAACC
TTGCACTAGCTGCTTCAATTTTCGAAAACCAAAACCTTAACCTTCCCTAA
GATCATGAGTAGGCGATGCTGTCTGTTTCTTCGGAGACACTAATACCTAC
CTGCTGTCCATTGTAAGGTTTCATGCACTCATGAGCATTTTTTTCCGAAA
TGCGGCTTCGGGGAACTCGTGATTAATCATCATCGCACATGACTGACGAC
GCCTGACCAACAGGCCGCCGAAGCGCAGCATGCTCACCCCTCGCCCCGCA
CAACAACGCGCCGGCTTTTCAATGGATCCGGCTTTTTATCTTTGCGTATG
TTGTAGGCAGTGCACACTTTTTGGTTGGCGTGCTGGCTGCTGACACACAT
ATAGTCTAATATGCCACCCACCACCACCACATCTCCTTTGTCTCTCCAAC
ACAAGTGACAGCAGTAGGCGCTGGGTCCTACACCTCTTGAAACAAAGGAT
ACCCTTTGGGCGGAAATCCGCTTCTTCTTTTCCTAATAATGGGAGTTATT
TAGTCCGATACACACGAGATGGTCACCAAACTTGTTGAGCTGTGTTACCC
ATACAGCGGAGATATCGTTCTACAGCAGTACGCTTCTCGGAGAGAAAAGA
CACGGAGACACTCTGTCCGTGTTTTTACGTTTACTGCTGTCTAAAAGTCT
CCGCTAGCAACGCAACGTGATGAATTGTTCGTTGCTATGCATAATTCTAT
CCCAGACTTTTATCTGTGGAAGAAAAGATGAAATGTTTGTTGAGCATTCG
AAAGAAAGAACGAAGCAAGACGGTTTCTGGAACTGAACGGCACAGAGGGA
AAAGGGAAAACCGGACACTTTTCGTTTCCTGCTTCTTGCCGGTGATCGAT
CGCAATACTGGTGGGACAAATGGACAAACTTAGTTAAACGGTTGGGTGAA
CAACCCTTACGCGCACCAAAAACTAGTGAGACCATCTGCATATGCGTAGA
TTATAACAAGGCATGCAATTTCCTGTTCTCCACTTTTTTTGTAGAAGGCT
TGACCTGCGTACCTTGAAGCAAGCACCCAAGAGGTCACCAACGTGTTGCT
TGTGGTGCGGCAGACAAGAAGCAAGACAACAACCAGAACGAACGTCTCCC
CTGTGAGACCGTAACATCATCCGCACAAGCACGCAGAGAATACTACTAGT
AAAAATTCTTGCTGTTTCCCTTGGGCGTGCTTCGTCTCTCAAACCAACAC
GGGAGTGCTCGTCCTCGCCTAACTAAATAAGAACGTGTACAGTACTTGCT
GTACAGAGAGATACGAAGTTCATATCTAGCACCCTGTCGTTTGGGTACCA
CTGCTACCCATCATAGATGATGGGGAGAACGTGCTTTCCCCGTACACACT
GATTTGGTGCACTGATTTGTTGTGCACGGCCGGCACTACTGCTGTTTAAC
AACCCAAACAGCCGTATCGGTATCGAGGTATCGGTATCGAGTATCGATAC
AATACTCGGTATGTACTCGGTATGTATCGAGCCATTTTCCAAATATCGAA
CAAAATATCCAATATCGGTATTTGCGTTTTTCTCTCGATACGGCGGTGGG
CGTATTGTATCGAACCCTTCTTCCGGACCAATATCCAACACTAACGCTGG
TAGATGGAGCCTCGGGTGGTGATGCATGCACAGACAGATGTAACAGCTTG
ACAACCTACGAAAGCGAGATAGAAGATAGAAACTCGATTGGCACCACCAT
CCGTCGTCCACCATGCATGATGAAAACCCCATTCCGCCGGTCTCGAACAT
CGATCTTTTGATCTTTTTGCACTCCGGTGCACCCGGGATTGAGGGATGTA
TGCATATGCAGGCAAGAGGGAACGGGCGGGATATGTCATTTCGCCTGTGG
AGATGGTGCAAGAAAATACTGAGGCACACATACGCATGAAGTACATTTGC
TATGAAGATATGGTGGTTCTACACAGCAGCCTTTTAACTTGACGCATCGA
CGGTCTCTTGGCCGTTTTGAAACGTGCTGCCTGCTGCCTTTTTTCGGAGA
AAATTGTGACTCTGCGGTTGGTTCTTCAAAAACCCTCTACTGCTGTAGCA
CCGCCGTACTTGCGTGTGTACGCGGTACAGTAGTAGTACGGCAAATCCCA
TCAAAGGCCATCGAATTGAACATGAAGTAGAGCTGCTGTTTTCTGTTGTT
GATGAGACAACACCAGCACCAGCACCAACGGCCCTCAAACGATGGAGTTT
TATTTCCTACTGTACGTACCCCGCGAATTTTCTTGTGGTTCGGCTGAGTT
TCGAGGTTACGATCCTCTTTGCGATGGCGAAAAGAGAAGAACTCCCTGCG
TAGTACTAAAGAAATAGGATAAGTGACGTCTGTTATAGGTTTGTGGACGG
ACGACCATTCGCGTGCACAGACGAACCCATGCCATGGAGCATGGGCGAGA
GAAAGAAAAGCACTATTTTAACACCGTCAGTCACTCAAAGGATGGTTGTA
CCCATTCAACAGTGACTGGCGGTCTGCGTACCCCCCTCACGGAATCGCAC
GTTACAGAGTAGGCGGCAGGGGGCGGATGCGCAGAAGTAACATCCACGCC
AGCGTTATTTTCCGAGAGAAACAGAGACAGAAAGAGTGCGGTGCATGCAA
GCGCATCTTAATAGTCTTGGTGTGGACCGGGACACGTCAACCTCGTCTCT
GTAGTCCGTCCTTTCATGTCTTATTTTCTCTCTAGCAGGAGTTGTTTTCT
TCCACAAGCGGAACGCGTTCATCTCTTGTGCTGCTGTCCTCGCCCTCTCT
ACTACCAAATTTTTTTTTGTCGTTTTCAGGAGCGGAAGAGGGACCGACTT
TCGCCCAGCGCTAGCGCCTGGCACAGCCGACAGCGGCAGCAACAACAACA
ACAACAACAACAACAACAACAGCAACAGCAAGTCTACCGTACCGGCGGTG
GAAGGGGAGGGGCCCTGCGGAGGGGGAGAGACCCTGCACACTACGGTGGT
CTCGGGAAACGACGAGCTCGGAGGAGAGGCCAAGAGCTCCCCTTCGATCA
TGGAGCTCTTCGACACCAACGACGTGGTAGCGGCGGCGAGAGAGCAGGCC
GCGGCGCGCAACAGCAACAAGACCGCCGCCGCCGCCGCCGCCGCTACTGC
TACCGCCGCCGCTACCCCCGCCGACGGTGCCGCCGAGGCGTCGCCGGCAG
CGAGGCGCCACAGCTTAGGCCGCGGCAGAAGCAAAAGGTTTTCCACGGAG
ACGCTCCGGCCATCGTCGGGGGCGTGGAGCCACCGGAACGGGTTGCCCGC
CCACAGGAAGGCCGCGTCGTTCTCTGGGGGGCTCCCCCGCGCGGGGAGGG
GCTCCGGGGGCTCCGTGGGGGGGGCGGAACGGCACGGGTACCTCAGCTTT
TCGGAAGTCCAGGTGAGGAGAAGCAGAGGGTTGGGTGGTCCCCGGGGGGT
GAGCGGAAGACGCCGAAGCTACAGCGGGGAAATATCGCCATTGACGCTGC
TTCTCCCCGCCGCATCCAGACCGCGAAGCAGCGCCATCCCTTCCTTGCAC
ATCCCGTAGTAATTACTATTTCGAAGTAATATCATTTGTTTGTAAGTTGT
AGTCGCGTGTTCGTGGTCGGGTGCTGATGCTGTCGCTTTTTTCTTTATTT
TTAGGTGGACGAGGAAGACGACGGCGATGATTGCGTCGGCCACAACAGCA
GCAGCACCGCGAGCAGCACCAGCAGCAAGTTCGGGCGGGAGATGCCGCAC
CGAAGGCGCAAGAAGCGGGCTCGCGCGTGGAAGCTGTTCTTGGCGGTGAT
GCAAGAGCACGGGCTGCGGGTCCGCAAGTACCATCGCCACGGCAAGGGGT
GGGCGCACCGGATAGTCAAGTACGACCCAACCCTGCCGGGCCTGCGATGG
AAGAGCAGCAAGTGGTGGGACTCTGGCGGCGGCCAGGTACGGTATCCGTC
TATCCACCCTCTCGTCCTCGTTGCTACCTGTGGTTGTTGTGTGGGTGATG
GTGTTGACATTGAAACTGTCAGAGCTCGGAATCTTCCACCCACTCGTTCC
CACTCCCCGCCCCAGTGTTTTTTTGCGGTGCTTGTGCACACGGTTGTATC
ATGCCGCCGTCCTGAAGTCATTTTGTTTCAGGACCTCCCAAAAACACCCC
TGCCTGAATCCAACCAAGCCACTCTACAACCCCAGTCCTCCTCCACCCGC
CCGACCCTCGAAAGCATAACCAACCATTATTTCCTCCGCGGTGAAACAGA
TACCGCTGCGGGATGTTTTGGACGTGGAGCGGAGGGGCAAGGTGGTGTGG
ATCAAGTGCCTACACCTCGGCACCATCGGCTTCGAGGCCTCCCTTGAGAC
GGACGCGGTAGTCTTCTACCTGGCGATGGACTCGTTGCTCGACACCCGCT
GCGGCGTCTCAAACGACAGCAGCGTCGGCGGTACCGGAGGCCACGAGGCG
TCAGGCCTTCGCCTTTCGGGAATTCCGGCGGCGTAACGCCTTGATATGTA
CCTCTGGGGAGGGGAGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig6911:1350..6766- >mRNA_E_fasciculatus_S2_contig6911.15049.1 ID=mRNA_E_fasciculatus_S2_contig6911.15049.1|Name=mRNA_E_fasciculatus_S2_contig6911.15049.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1131bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6911:1350..6766- (Ectocarpus fasciculatus EfasUO2) ATGTGGCCCCGACGCGAAAGGACCAGCAGCAGCGGAAGAGGGACCGACTT TCGCCCAGCGCTAGCGCCTGGCACAGCCGACAGCGGCAGCAACAACAACA ACAACAACAACAACAACAACAGCAACAGCAAGTCTACCGTACCGGCGGTG GAAGGGGAGGGGCCCTGCGGAGGGGGAGAGACCCTGCACACTACGGTGGT CTCGGGAAACGACGAGCTCGGAGGAGAGGCCAAGAGCTCCCCTTCGATCA TGGAGCTCTTCGACACCAACGACGTGGTAGCGGCGGCGAGAGAGCAGGCC GCGGCGCGCAACAGCAACAAGACCGCCGCCGCCGCCGCCGCCGCTACTGC TACCGCCGCCGCTACCCCCGCCGACGGTGCCGCCGAGGCGTCGCCGGCAG CGAGGCGCCACAGCTTAGGCCGCGGCAGAAGCAAAAGGTTTTCCACGGAG ACGCTCCGGCCATCGTCGGGGGCGTGGAGCCACCGGAACGGGTTGCCCGC CCACAGGAAGGCCGCGTCGTTCTCTGGGGGGCTCCCCCGCGCGGGGAGGG GCTCCGGGGGCTCCGTGGGGGGGGCGGAACGGCACGGGTACCTCAGCTTT TCGGAAGTCCAGGTGGACGAGGAAGACGACGGCGATGATTGCGTCGGCCA CAACAGCAGCAGCACCGCGAGCAGCACCAGCAGCAAGTTCGGGCGGGAGA TGCCGCACCGAAGGCGCAAGAAGCGGGCTCGCGCGTGGAAGCTGTTCTTG GCGGTGATGCAAGAGCACGGGCTGCGGGTCCGCAAGTACCATCGCCACGG CAAGGGGTGGGCGCACCGGATAGTCAAGTACGACCCAACCCTGCCGGGCC TGCGATGGAAGAGCAGCAAGTGGTGGGACTCTGGCGGCGGCCAGATACCG CTGCGGGATGTTTTGGACGTGGAGCGGAGGGGCAAGGTGGTGTGGATCAA GTGCCTACACCTCGGCACCATCGGCTTCGAGGCCTCCCTTGAGACGGACG CGGTAGTCTTCTACCTGGCGATGGACTCGTTGCTCGACACCCGCTGCGGC GTCTCAAACGACAGCAGCGTCGGCGGTACCGGAGGCCACGAGGCGTCAGG CCTTCGCCTTTCGGGAATTCCGGCGGCGTAA back to top
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