mRNA_E-fasciculatus_F_contig10068.75.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10068.75.1
Unique NamemRNA_E-fasciculatus_F_contig10068.75.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: D7FVH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH8_ECTSI)

HSP 1 Score: 391 bits (1004), Expect = 2.700e-132
Identity = 221/249 (88.76%), Postives = 227/249 (91.16%), Query Frame = 1 
Query:    1 IFRNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLALPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXX-YHGQSQQGYGHQQGXXXXXXXXXGGYEDMHHMHQPTGNRRWGSQEPTPKRN 744
            + RNSFGPSYLF NVRTSLGKA+SAFVKEGAGG A G V V+GLDSKGEGLEDGETRL TEV EDGSTEWGGFGGKLALP PEIST VGETLQAPEKPRGMFEDV+NNQV MAVYAMPPKGEHVCRMLPGV+ALP+TLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLG XXXXX YHGQSQ GYG    XXXXXXXXX    DMHHMHQPTGNRRWGSQEPTPKRN
Sbjct:    3 VLRNSFGPSYLFTNVRTSLGKAVSAFVKEGAGGKAGG-VEVKGLDSKGEGLEDGETRLCTEVQEDGSTEWGGFGGKLALPAPEISTAVGETLQAPEKPRGMFEDVANNQVVMAVYAMPPKGEHVCRMLPGVDALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGXXXXXXXYHGQSQ-GYGXXXXXXXXXXXXXXXXXDMHHMHQPTGNRRWGSQEPTPKRN 249
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BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 3.850e-131
Identity = 221/246 (89.84%), Postives = 230/246 (93.50%), Query Frame = 1 
Query:    7 RNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLALPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQQGYGHQQGXXXXXXXXXGGYEDMHHMHQPTGNRRWGSQEPTPKRN 744
            RNSFGPSYLFANVRT LGKA+SAFVKEGAGGTA G V V+GLDSK EGLE GE RL TEV EDGSTEWGGFGGKLA+P+PEIST VG+TLQAPEKPRGMFEDV+NNQVAMAVYAMPPKGEHVCRMLPGVEALP+TLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQ GYG+QQG   XXXX  GGYEDMHHMHQPTG+RRWGSQEPTPKRN
Sbjct:  880 RNSFGPSYLFANVRTPLGKAVSAFVKEGAGGTAGG-VEVKGLDSKAEGLEAGEARLCTEVQEDGSTEWGGFGGKLAIPNPEISTAVGDTLQAPEKPRGMFEDVANNQVAMAVYAMPPKGEHVCRMLPGVEALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQ-GYGYQQGGRSXXXXYHGGYEDMHHMHQPTGSRRWGSQEPTPKRN 1123
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BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: A0A835YKU1_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.830e-19
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:    7 RNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLA-LPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGS 486
            RNSFGPSY+F +  + L + +    + G            G  SKG+ L               ++E+ G+ G +      +    +G+ L APE+P G  E V NNQV  A Y MPP+  HVC MLPGV+     L P+DL  RRPPRLNR MSIAE+G+
Sbjct: 1598 RNSFGPSYIFVHSTSHLSQRIMGVYQAG-----------NGKKSKGDFLR--------------ASEFEGWSGTVKPAKGADARQQLGKPLPAPERPEGALEGVKNNQVLCAEYEMPPRMPHVCAMLPGVDPPAIELGPEDLTPRRPPRLNRGMSIAELGT 1733
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVH8_ECTSI2.700e-13288.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF35_9PHAE3.850e-13189.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKU1_9STRA1.830e-1939.13XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10068contigE-fasciculatus_F_contig10068:44..3017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001130.1
Exons6
Model size750
Cds size750
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10068.75.1prot_E-fasciculatus_F_contig10068.75.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10068 44..3017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.1962624-CDS-E-fasciculatus_F_contig10068:43..1841622927508.1962624-CDS-E-fasciculatus_F_contig10068:43..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 44..184 -
1695995569.7149687-CDS-E-fasciculatus_F_contig10068:43..1841695995569.7149687-CDS-E-fasciculatus_F_contig10068:43..184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 44..184 -
1622927508.2135475-CDS-E-fasciculatus_F_contig10068:362..4571622927508.2135475-CDS-E-fasciculatus_F_contig10068:362..457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 363..457 -
1695995569.7564375-CDS-E-fasciculatus_F_contig10068:362..4571695995569.7564375-CDS-E-fasciculatus_F_contig10068:362..457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 363..457 -
1622927508.2292879-CDS-E-fasciculatus_F_contig10068:827..9811622927508.2292879-CDS-E-fasciculatus_F_contig10068:827..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 828..981 -
1695995569.7717102-CDS-E-fasciculatus_F_contig10068:827..9811695995569.7717102-CDS-E-fasciculatus_F_contig10068:827..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 828..981 -
1622927508.2466962-CDS-E-fasciculatus_F_contig10068:1510..15701622927508.2466962-CDS-E-fasciculatus_F_contig10068:1510..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 1511..1570 -
1695995569.7807267-CDS-E-fasciculatus_F_contig10068:1510..15701695995569.7807267-CDS-E-fasciculatus_F_contig10068:1510..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 1511..1570 -
1622927508.2602992-CDS-E-fasciculatus_F_contig10068:2106..22021622927508.2602992-CDS-E-fasciculatus_F_contig10068:2106..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 2107..2202 -
1695995569.7897887-CDS-E-fasciculatus_F_contig10068:2106..22021695995569.7897887-CDS-E-fasciculatus_F_contig10068:2106..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 2107..2202 -
1622927508.2735884-CDS-E-fasciculatus_F_contig10068:2813..30171622927508.2735884-CDS-E-fasciculatus_F_contig10068:2813..3017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 2814..3017 -
1695995569.8025644-CDS-E-fasciculatus_F_contig10068:2813..30171695995569.8025644-CDS-E-fasciculatus_F_contig10068:2813..3017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10068 2814..3017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10068.75.1

>prot_E-fasciculatus_F_contig10068.75.1 ID=prot_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=250bp
IFRNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEG
LEDGETRLSTEVHEDGSTEWGGFGGKLALPDPEISTTVGETLQAPEKPRG
MFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPR
LNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGGGGGGYHG
QSQQGYGHQQGGRGGRGGYHGGYEDMHHMHQPTGNRRWGSQEPTPKRNR*
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mRNA from alignment at E-fasciculatus_F_contig10068:44..3017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10068.75.1 ID=mRNA_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10068:44..3017- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTTCAGGAATTCTTTCGGGCCGTCCTACCTCTTCGCCAACGTCCGGAC
GTCCCTGGGGAAAGCCCTGTCGGCGTTCGTGAAGGAGGGTGCTGGGGGGA
CGGCAGACGGCAAGGTTGTGGTTCAGGGGCTGGACTCGAAGGGGGAAGGG
CTGGAGGACGGGGAGACTCGTCTCTCTACGGAGGTGCATGAAGATGGATC
TACCGTGAGATACTTTTTGTTGCTACTCTCTCCTCGCTTCATGTTTCCTC
TCCGGTTTGGCACTTTTTTTTTTGTTGGTTTGTTGTCGTGGTGATGCATG
TGATACTTGAATGACGGGAAAATGTGGGTACTTCAATGACGACGTCACGA
CTAGTTTTTTGCTTCGTGGGTGTGGGTGGCCAGAAGAAGCAGGAGGAACG
CGAACACAAACACATGGACGTGGGTAGGATCTCAGATTCGTGAGTTGCGT
TTCGGAGTTGTAGCGTATCTGTCGTGAGTTTTTTTTTTGTTTTTCGTACG
TATTGTCGTCCTTGCTTGAAAAGGTTCATTCCATTCTTCCCCCATGTTCG
TGTCTCGCATGGAAGCGCGATCGATTTGAATGCCGCCTTGCTCGCCGTGT
GGCAGTGGGTTCATGAACCCCACCTCTCCGGCTTGCCGGTTTTCCAATCG
CAAAACAAAGAGACTATTTATGGTGTTTCTCGAGCGAGAAGTATTTCTTA
TTTTGTATGTATGTTTATGTTCCCAAAAAGTAAGGAAACGACTCACTCTC
TTCCCATCCTCATCCCACCCCCCGTGGGCTACCGAACACATCGAATGCGA
CTTTTCTTTCCTCAGGAATGGGGAGGTTTCGGCGGTAAGTTGGCGTTACC
AGACCCGGAGATCAGCACCACCGTGGGGGAAACGCTGCAGGCGCCAGAGA
AGCCGAGGGGGGTGAGTCCTCACGCGAGGGGAGTCTTACGAGAAAAACGC
CTGTTTTTGTTTGTCGGCGAGAGTCGGGGGTGTTTGTAGAACCAGTTGAG
ATGTGTGTGTAAAATGTGTTAAAAAAAATAACGTATATTGTGTTAGCAAA
CGACGACGACGTCCGCCGTTCATCACATGCCCAGAGTAATGGCTGAACAA
AATTCAGACCTTAGCTTGAACCGCAGACCTTGGTTTGAAGCCGGGGATGT
TTCATGCTCATCCCCGCCCCACGTCAACATCCATGACGGCTTACCGTTGA
CGAACGCCTAAGGGTGTGCATGTGAGAGTCACGGGGTGGGGGGGCGACGG
GGAATGAACACGTGCGCACACACGTCCCTTAGTACTCCCCGCCGCGTGAC
GGTAGCATAGCAGTCCTACAATACTGCTGTACAGAAGCCTCCCACGCCGC
TGAAAATTCGCTGCTGAGAAATTCAGGGGCCCGACGTTCATGAAGTGTAA
GGAATTACAACCCACACGTTCTTTGCTTGCTTTTTTTTTCCCGGCAGATG
TTCGAGGACGTGTCCAACAACCAGGTGGCTATGGCGGTGTACGCGATGCC
TCCCAAGGTAACTATAAGAGTTGCATTTACGATTAGGAGCCGTGTCGTTT
GTTCCTGGTTGTATAATAGTCGATTGATGTGTTGATGTGGTCGTAACCAG
GTATATCGATTTTTTTTGTTTCTCCTGTACCCCTCGTCTCTCCCCTTGTC
TGTGCGTGTCTATGGGAGTTGTAGGGTTGGTGGTTTTCTAGCACCCTCTT
GTGCAGCAAAAAAAAAAAGTCCTTGTATTTGTTTAGACCCTCCTCCTGTC
TGACCCCCGGCTGATTCGTCAAGCATAAACAGTACCAGATGGTGCAAGCT
GGCGGCAGAATCAACTATAATACCGGGACGGGAAACACCCACACACACAC
ACACACAACAAACCTCTTTCACTCGCCTGACTCCCCGGTCGCCGGTTACC
CTGATTACCAACCGACCCATGCTGTCTCAAGGGGGAGCACGTGTGCCGCA
TGTACACACAGCAAATCTCTCTCACTCCCCCTCGCTCGCCGTTTCGCACC
TCCCGTGCCTACTGTTTGCACGCTAACTCAATCAAGGGGGAGCACGTGTG
CCGCATGCTTCCCGGGGTGGAAGCGCTCCCCAGAACACTCCTGCCTCAGG
ACCTTGTCAGCCGCCGGCCCCCTCGGCTGAACCGCAACATGAGCATCGCC
GAGATGGGCTCCACCAAGTACAACCCGCATCAGCAACAGGGTGAGAGACA
GGGGTGGCAGACGTGATATTTAATGGCTGAGACCGGAACGGCTTTCTATT
GTGAAGACAACAACAACAACAACAACAACTCTGAGTTTCGAGAGGAGGGC
AAGGACTTGCTAAACATTCGTTTTTTTCAACCCTTAATATGAGTGCGGAA
GAACTTTGTTGTTTTCTTGCTGAAGTACCGACACACCAGAGGGCAAGAGT
CACCATAGGTTCGGCCTGTTTTGTGCAATCCTGTGCGTGTGTCCGTCGGT
CCTCGTTGTGATTGTAGAGTGTTGTGTTGATCTGCACGGAAGAACTTGGC
AAATGTGCCCCCCCCCCACACACACACTCTAATTTTTTCATGGTGCTGTT
CACGACGTAGGCGGGCGTCACCAGGGTGGCTTCGGCGCCGGGCAGCGGAT
GATAAGGCATCAGCTGGGCGGCGGCGGCGGTGGAGGATACCACGGGCAGT
CGCAGGTGATGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTAGGTTTGGGGTGGATGTGTATACCCCGGCATACACGATACACAGGAAG
GAAAACATATCCTGAGATTTGCAAGCTCCTCATATTACGCGGACCCTATA
TCGTGTGGCGTATTGTTTTTATTGCTGTCCGAGCAGGGATATGGTCACCA
GCAGGGTGGCCGGGGAGGCAGGGGGGGTTACCACGGAGGCTACGAGGACA
TGCACCACATGCACCAGCCCACGGGGAATCGGCGCTGGGGCTCTCAGGAG
CCGACCCCCAAGCGGAACAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10068:44..3017-

>mRNA_E-fasciculatus_F_contig10068.75.1 ID=mRNA_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10068:44..3017- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTTCAGGAATTCTTTCGGGCCGTCCTACCTCTTCGCCAACGTCCGGAC
GTCCCTGGGGAAAGCCCTGTCGGCGTTCGTGAAGGAGGGTGCTGGGGGGA
CGGCAGACGGCAAGGTTGTGGTTCAGGGGCTGGACTCGAAGGGGGAAGGG
CTGGAGGACGGGGAGACTCGTCTCTCTACGGAGGTGCATGAAGATGGATC
TACCATTTTCAGGAATTCTTTCGGGCCGTCCTACCTCTTCGCCAACGTCC
GGACGTCCCTGGGGAAAGCCCTGTCGGCGTTCGTGAAGGAGGGTGCTGGG
GGGACGGCAGACGGCAAGGTTGTGGTTCAGGGGCTGGACTCGAAGGGGGA
AGGGCTGGAGGACGGGGAGACTCGTCTCTCTACGGAGGTGCATGAAGATG
GATCTACCGAATGGGGAGGTTTCGGCGGTAAGTTGGCGTTACCAGACCCG
GAGATCAGCACCACCGTGGGGGAAACGCTGCAGGCGCCAGAGAAGCCGAG
GGGGGAATGGGGAGGTTTCGGCGGTAAGTTGGCGTTACCAGACCCGGAGA
TCAGCACCACCGTGGGGGAAACGCTGCAGGCGCCAGAGAAGCCGAGGGGG
ATGTTCGAGGACGTGTCCAACAACCAGGTGGCTATGGCGGTGTACGCGAT
GCCTCCCAAGATGTTCGAGGACGTGTCCAACAACCAGGTGGCTATGGCGG
TGTACGCGATGCCTCCCAAGGGGGAGCACGTGTGCCGCATGCTTCCCGGG
GTGGAAGCGCTCCCCAGAACACTCCTGCCTCAGGACCTTGTCAGCCGCCG
GCCCCCTCGGCTGAACCGCAACATGAGCATCGCCGAGATGGGCTCCACCA
AGTACAACCCGCATCAGCAACAGGGGGGAGCACGTGTGCCGCATGCTTCC
CGGGGTGGAAGCGCTCCCCAGAACACTCCTGCCTCAGGACCTTGTCAGCC
GCCGGCCCCCTCGGCTGAACCGCAACATGAGCATCGCCGAGATGGGCTCC
ACCAAGTACAACCCGCATCAGCAACAGGGCGGGCGTCACCAGGGTGGCTT
CGGCGCCGGGCAGCGGATGATAAGGCATCAGCTGGGCGGCGGCGGCGGTG
GAGGATACCACGGGCAGTCGCAGGCGGGCGTCACCAGGGTGGCTTCGGCG
CCGGGCAGCGGATGATAAGGCATCAGCTGGGCGGCGGCGGCGGTGGAGGA
TACCACGGGCAGTCGCAGCAGGGATATGGTCACCAGCAGGGTGGCCGGGG
AGGCAGGGGGGGTTACCACGGAGGCTACGAGGACATGCACCACATGCACC
AGCCCACGGGGAATCGGCGCTGGGGCTCTCAGGAGCCGACCCCCAAGCGG
AACAGGTGACAGGGATATGGTCACCAGCAGGGTGGCCGGGGAGGCAGGGG
GGGTTACCACGGAGGCTACGAGGACATGCACCACATGCACCAGCCCACGG
GGAATCGGCGCTGGGGCTCTCAGGAGCCGACCCCCAAGCGGAACAGGTGA
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