prot_E-fasciculatus_F_contig10875.709.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig10875.709.1
Unique Nameprot_E-fasciculatus_F_contig10875.709.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length355
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10875.709.1 vs. uniprot
Match: D7FUK7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK7_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 2.030e-93
Identity = 225/276 (81.52%), Postives = 231/276 (83.70%), Query Frame = 0 
Query:    2 RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFFVLVGAVSLETISVQGCPQGLPAIDMGAAVPPSTXXXXXXXXXXXXXXXXXXXPLSASRLLSRQPQA------SAAAAGDGRFGLQDDERQRHQPDDGALPFL--TXXXXXXXXXFTATVPGAPASMSSPSSLPSLRHLNLGRCRGVTDLALARVAGAF 269
            RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VTDAGFHLQQSPF+VL+GAVSLETISVQGCPQGLPAIDMG AV PS+                   PLS SR +S QPQA      + AAAGDGRFG+QD ERQRHQPDDG LPFL     XXXXXXX T TVP AP  MSS SSLPSLRHLNLGRCRGVTDLALARVAGAF
Sbjct:   43 RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQGLPAIDMGVAVAPSSAIVGPPNEDL---------PLSGSRPVSPQPQALHGNAAATAAAGDGRFGMQD-ERQRHQPDDGGLPFLPSAAAXXXXXXXVTVTVPVAP--MSSSSSLPSLRHLNLGRCRGVTDLALARVAGAF 306
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10875.709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUK7_ECTSI2.030e-9381.52Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 295..320
e-value: 2.3E-4
score: 30.5
coord: 243..268
e-value: 0.011
score: 24.9
coord: 66..91
e-value: 14.0
score: 13.4
coord: 321..346
e-value: 3.1E-4
score: 30.1
coord: 92..116
e-value: 17.0
score: 12.9
coord: 269..294
e-value: 1.0
score: 18.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..148
e-value: 4.1E-15
score: 57.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 235..354
e-value: 8.6E-30
score: 105.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 320..339
e-value: 1.7
score: 8.9
coord: 295..318
e-value: 0.49
score: 10.6
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 242..353
coord: 37..136
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 32..352

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10875contigE-fasciculatus_F_contig10875:112..4675 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10875.709.1mRNA_E-fasciculatus_F_contig10875.709.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig10875 112..4675 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig10875.709.1 ID=prot_E-fasciculatus_F_contig10875.709.1|Name=mRNA_E-fasciculatus_F_contig10875.709.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=355bp
GRGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSG
CSYVPKSVFKQLGFSCPRIVHLNLSMCSQVNNAIVRSVLQGCSALRQLYL
DGCRHVTDAGFHLQQSPFFVLVGAVSLETISVQGCPQGLPAIDMGAAVPP
STATGGPPPRAAGGGGIDEERPLSASRLLSRQPQASAAAAGDGRFGLQDD
ERQRHQPDDGALPFLTSGGGGGGGGFTATVPGAPASMSSPSSLPSLRHLN
LGRCRGVTDLALARVAGAFPGLEGLHLDHCLGVTDAGVAALAAGCRGLRA
LGLRNCGQITDSALEALSVSCPSLEWLDVSWCGGVTDRGFERLVEGCPGL
EEVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR006553Leu-rich_rpt_Cys-con_subtyp