mRNA_E-fasciculatus_F_contig10867.702.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10867.702.1
Unique NamemRNA_E-fasciculatus_F_contig10867.702.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10867.702.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 5.160e-153
Identity = 254/286 (88.81%), Postives = 264/286 (92.31%), Query Frame = 1 
Query:    1 QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGASLGGRAALSECGEKIAAASRLCELQDSISRKSVGAKAAGLLEDCVKLSLRSREARAGAPAARVAVTSERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASRAPLAKALLFDSSLEDGDKLPLLDLVSVVIAGVFEAALRHRASERSVYRAGVRGKLWTASSEARLILFRQLMAYNGSIDGIGLQGPGAAGRGGG-----SGEGTRGVIERLSVLLLDGFKEEKDANPAASGR 843
            +AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGA   GRAALSECGEK+AAASRLCELQDSISRK VGAKAAGLLEDCVK SLR+REAR+GA AA VAVTSERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASR PLAKALLFDSSLE+GD+LPLLD VSVVIAGVFEAALRHRASERSVYR+G+RGKLWTASSEARL+LFRQL+AYNGSIDGI LQGPGAAG         S E T GVIERLSVLLLDGFKEEKDANPAASGR
Sbjct:  523 RAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGALSVGRAALSECGEKVAAASRLCELQDSISRKHVGAKAAGLLEDCVKFSLRNREARSGAAAA-VAVTSERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASRTPLAKALLFDSSLEEGDRLPLLDHVSVVIAGVFEAALRHRASERSVYRSGLRGKLWTASSEARLVLFRQLLAYNGSIDGICLQGPGAAGXXXXXXXXVSREATSGVIERLSVLLLDGFKEEKDANPAASGR 807
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BLAST of mRNA_E-fasciculatus_F_contig10867.702.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 457 bits (1176), Expect = 3.340e-149
Identity = 250/285 (87.72%), Postives = 258/285 (90.53%), Query Frame = 1 
Query:    1 QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGASLGGRAALSECGEKIAAASRLCELQDSISRKSVGAKAAGLLEDCVKLSLRSREARAGAPAARVAV--TSERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASRAPLAKALLFDSSLEDGDKLPLLDLVSVVIAGVFEAALRHRASERSVYRAGVRGKLWTASSEARLILFRQLMAYNGSIDGIGLQGPGAAGRGGGSGE--GTRGVIERLSVLLLDGFKEEKDANPAASGR 843
            QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVL+DAGAWGAS  GRAALSECGEK+AAASRLCELQDSISRK VGAKAAGLLE CVKLSLR+REARAGA          SERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASR PLAKALLFDSSLE+GD+LPLLD VSVVIAGVFEAALRHRASERSVYR+G+RGKLWTAS EARLILFRQL+AYNGSIDGI LQGPGAAGR        GT GVIERLSVLLLDGFKEEKDANPAASGR
Sbjct:  589 QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLLDAGAWGASSVGRAALSECGEKVAAASRLCELQDSISRKHVGAKAAGLLEGCVKLSLRNREARAGAXXXXXXXXXASERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSIDGASRTPLAKALLFDSSLEEGDRLPLLDHVSVVIAGVFEAALRHRASERSVYRSGLRGKLWTASGEARLILFRQLLAYNGSIDGIYLQGPGAAGRXXXXXXXXGTSGVIERLSVLLLDGFKEEKDANPAASGR 873
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10867.702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE5.160e-15388.81Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
D8LMM2_ECTSI3.340e-14987.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10867contigE-fasciculatus_F_contig10867:170..3929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size843
Cds size843
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10867.702.1prot_E-fasciculatus_F_contig10867.702.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10867 170..3929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927587.0493667-CDS-E-fasciculatus_F_contig10867:169..3941622927587.0493667-CDS-E-fasciculatus_F_contig10867:169..394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 170..394 +
1695995608.5453217-CDS-E-fasciculatus_F_contig10867:169..3941695995608.5453217-CDS-E-fasciculatus_F_contig10867:169..394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 170..394 +
1622927587.0632565-CDS-E-fasciculatus_F_contig10867:1212..14061622927587.0632565-CDS-E-fasciculatus_F_contig10867:1212..1406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 1213..1406 +
1695995608.5552468-CDS-E-fasciculatus_F_contig10867:1212..14061695995608.5552468-CDS-E-fasciculatus_F_contig10867:1212..1406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 1213..1406 +
1622927587.0762491-CDS-E-fasciculatus_F_contig10867:2112..22711622927587.0762491-CDS-E-fasciculatus_F_contig10867:2112..2271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 2113..2271 +
1695995608.565079-CDS-E-fasciculatus_F_contig10867:2112..22711695995608.565079-CDS-E-fasciculatus_F_contig10867:2112..2271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 2113..2271 +
1622927587.088973-CDS-E-fasciculatus_F_contig10867:2855..29911622927587.088973-CDS-E-fasciculatus_F_contig10867:2855..2991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 2856..2991 +
1695995608.5761325-CDS-E-fasciculatus_F_contig10867:2855..29911695995608.5761325-CDS-E-fasciculatus_F_contig10867:2855..2991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 2856..2991 +
1622927587.1026082-CDS-E-fasciculatus_F_contig10867:3800..39291622927587.1026082-CDS-E-fasciculatus_F_contig10867:3800..3929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 3801..3929 +
1695995608.5956008-CDS-E-fasciculatus_F_contig10867:3800..39291695995608.5956008-CDS-E-fasciculatus_F_contig10867:3800..3929Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10867 3801..3929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10867.702.1

>prot_E-fasciculatus_F_contig10867.702.1 ID=prot_E-fasciculatus_F_contig10867.702.1|Name=mRNA_E-fasciculatus_F_contig10867.702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=281bp
QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGA
SLGGRAALSECGEKIAAASRLCELQDSISRKSVGAKAAGLLEDCVKLSLR
SREARAGAPAARVAVTSERDRYFEHTQGVLDAFVELHTPRLDEVAPSSSI
DGASRAPLAKALLFDSSLEDGDKLPLLDLVSVVIAGVFEAALRHRASERS
VYRAGVRGKLWTASSEARLILFRQLMAYNGSIDGIGLQGPGAAGRGGGSG
EGTRGVIERLSVLLLDGFKEEKDANPAASGR
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mRNA from alignment at E-fasciculatus_F_contig10867:170..3929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10867.702.1 ID=mRNA_E-fasciculatus_F_contig10867.702.1|Name=mRNA_E-fasciculatus_F_contig10867.702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3760bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10867:170..3929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCGGGCTGGAGGTTCTCAACGGTTCCTGGCGACACCCGTCGGCCTT
CGCGTCGCCGCACCAGCTGGTTCACCTGGCCCTCCGGGAGAAGGCCCGCC
GGCAGCGCGCGCTGGTCCGCGTCCTGATGGACGCTGGGGCGTGGGGGGCG
TCGTTGGGCGGGCGGGCGGCGCTCTCGGAGTGCGGGGAGAAGATCGCCGC
GGCGTCCAGGCTCTGCGAGCTGCAGGTGTGTGTGTGTGTGTGTGTGTGTT
TGTGTGTGTGTGCTTATCATTAGCATCGACCGCGCTAACCGGCTGACCAA
TGAAAAGACGTCAGTCTCAGTGTGGTGCGGTGGAAAACACAAATGCTTCT
ATAGTCCACAATCTGAGACCCCGGGACCGAGCGTCATGGGGGAGACTACG
CTACTCTGTGTTTGTGTGTGTGCGTTGGCCGGTCTGGCTGCCGCCGGCCT
TGCCTTGCATGCTCTATTGGTTTCTGTGTGTGTGTGCGCGCGCGCGTTTC
TCTGATTGGCATCGACCGCGTTACTGTGTACTGTAGCCGGCTGACCAATG
AGAGGGCGCTATTCTGGTAGCGGTAGCGGGATAGAGTGTGTGTACGTTAT
GTCTGTGTTCTAGTCTGGTAGCGGGATACAGTGTGTGTACGTTATGTCTG
TGTTTCTTTCTTTTGGCAGCGACCGCGCTATGTAGCCAGCCGGCTGACCA
ATGAAGCGACTTGCGTCTTACAGAGGGAAACCCACTTACCTACACCGTTT
CTCGTCAAAGGGTTCTACCGACGGGGGTGTGTGAGTGGCATCGGCCGCGC
CACGAAACCTCTCGACCAATCGAAAGACAGACGCCAGTACAATGTATTGT
GGCGGGATGAAAATCGCGAGCACGCTCGCGAGCAGAGGCCGCACCTTTTT
GGGCATGTTTTCCGAACGAAGGCCGCACCTCTATCTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCCTTCTCTCTCCTTCTCTCGGCTTCGCTAACGTTGCC
CCCCACCTTCGAACCGCTGAACATGAAAACCTAACCCTGATAGGACTCGA
TCTCGCGCAAGTCCGTCGGCGCGAAGGCGGCTGGTCTGCTGGAAGACTGC
GTCAAGCTCTCCCTACGGAGCAGGGAAGCGAGGGCGGGTGCGCCGGCGGC
GCGCGTGGCGGTTACGTCGGAACGGGATCGATACTTCGAGCACACCCAGG
GAGTGCTGGACGCCTTCGTGGAACTCCACACACCCAGGTACGCACGTGGT
GTGGTAGAAATATCATGCCGGAGGCATGCCTGCCTCTCTTTTTGGCATGC
GTGTGTTTGAAGGATGTGCCGTTCATTGAGGCGAGCAGTGACCACCCCCC
CATCGTCCATTGTCCAAGATAAGAAGAAGGCCCTTCGTCTTTGCTTCTCG
GTTTGCTCGGGTGACCCGGGGTCTCCCGTTCTCCGACCCCAATCAAGCTC
TCGACAACGAACGATCGCGAGGCTGGTTATGAGAACGATCGATTCTGCCC
ACAGCCCTGACACTCACAGAGGATTGGCTCGTGCCTGCACGAGAGGAACC
CCTGCGTGCCTCCCTCGAAAAAGGAAATGTCCTACAAGTACAGCAGTATG
GAAGGAATTTCCAGGCTTGCTCGGCGATTGCGAGCCCCGCGCCCACTACC
ATTTTGCGGCAAAGTGACTCCGGAAGGAATTGGCCTCCCCCGCCCCCGAC
CGATCTAAAAAACAAAGAGTTATCTGAACATTCCGGCGTCTCATGAGTGG
GGAAAGGTCGGGCAATAATAAAATAACAAAATGGGAAAAAGCTCCTGTCC
TCTTGTGTGAACCTGGCTGATACGTCAGTATTACTAGCAGTTTACGCCGA
AAGCCCTGTAAACCGGCGCCAGAATAGATGGGGACAAACACACACACACA
TTGCATTGTTGTGATCGATTTTTTCCGCTGTTGTTGTGGGCAGGCTGGAC
GAGGTCGCCCCGTCTTCCTCCATCGACGGCGCCTCGCGGGCGCCCCTGGC
GAAAGCGCTGCTGTTCGACTCTTCCCTGGAGGACGGAGACAAGCTGCCCT
TGCTCGACCTCGTCTCGGTCGTCATCGCCGGCGTCTTCGAAGCCGCTCTC
AGGTATTAATAGCGTCTGTGCTGCTGCGGTCGCTGGGTGTGGGTGGGTGG
GTGGGTAGGTGTAGACGCGTACGTGGAGATATGGTTCAGAGAGCGAGCGT
CGCATGGCGAACGGGGGTAAAGTAATACTTTTTGCATGTGAAGCGTCGTA
AGGTATGGATGGCACTGGAGGGGTTGGTTCGCGTGTAGGCGTAGCCGCCC
ACTGTTTTCTTTTTTCTGCTCTGCTCGCGGGGGTACTTGTACAGTACAGT
ACAGCGGGCGGTTTGCCGGTGCCTGTTGCGCGGTACATTATGCCGCCATC
ATTCCATGTTGCTTAACTTGGAGACACCAATGCCGTAGGGCGCTGGACAT
GCTGCACCGCAAGGTGACGCATTTATTAGTATTTACCTCGGTGCTGCTGC
TGTTGCTGCTGTACAAATAGAGGGAGCAAGATACCGGTGGACGCACCACA
TCCGCCTTTTTTTTCTTTTCTTTTTTCGTTTTTGGTCTCTCTCACGGGTC
ACACCACCTTCTTTGCGGGGCCCCGCCTGCTGCGCCGCACCTGCACGCAT
GCCTATAACACAACGAATATGCGTCGAAACGCGCAGGCACCGCGCGTCGG
AGCGAAGCGTCTACCGCGCCGGGGTGAGAGGCAAGCTGTGGACGGCGTCT
AGCGAAGCCAGGCTTATCCTGTTCCGGCAGCTCATGGCTTACAACGGAAG
CATCGACGGAATCGGCCTGCAGGTGAAAAAACGCGTTACAGCAGTGGTCG
TGGTAAATGGTTGATTTACAAGGTTCTGGGTCTTTCTGTTGCTTGAGACA
GGGAAGACATGGTGGTTTGCGGCGATGGTTGATTTACAAGTTTCTGGGTC
TTTTCTGTTGCTTCAGGTGGGGAAGACATGGTGGTGGTGGTGATAGTATG
GGGGAAGTAACACCGTCGCATATGTGGCACTGTACTGCTGTAGAGCGTCC
CTACCGAGCACTCTTCTTGCTATGTTAGATTAAGGCAACGCTGGGGGAGA
GGAGTCAGTCTGCGACGACAGGTAGCTCTACCGCCCTGCGTTGCGCTTGG
CATTGTCGTCCTCGCAACTCGTTTTGCTCATGGGTGAGCCGTGTGGTTTG
CTTGGCCTGCTCCTGTGTGCCGTGCGTACGGGCGGACGTATTTCGTTTTT
TCCTTTTCTTTTTGTATCTCCTGGGCCGAAACAGAGATAAGAGGCCACGA
ACCACGCGGACTATTTTTTTTGTGCAGCAGCACGTTGTTGTTTTTTTGCC
GCGGAGCCCCCGTCCTTCGGGCGCGCAAACCCCTGCAAGAGTGGCAGTGA
GCAAGCTTCACTCGCCGATAGTCGGCTGCTGTTGTTGGTCGAGCCACCGT
ACCGTCCTGTGCTTTCGCTGTTAGTGAGATCGATAACGAAGACATCGAAT
CAACGCCCCCACAAATCGGGATGAAATCAAGAGTCGGTTTTAACATACAG
ATCAATCAGACACAGCGTGTACCCACAGCCGACGACGATGTTGGAAAGCC
CTTTTGTTTGCCGTGCTGACCGGCGGCGCAGGGTCCCGGGGCGGCGGGCC
GTGGCGGCGGCTCCGGCGAGGGGACCCGCGGGGTGATCGAGCGCCTCTCC
GTGCTGCTGCTCGACGGTTTCAAGGAAGAGAAGGACGCGAATCCCGCCGC
TTCGGGCCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10867:170..3929+

>mRNA_E-fasciculatus_F_contig10867.702.1 ID=mRNA_E-fasciculatus_F_contig10867.702.1|Name=mRNA_E-fasciculatus_F_contig10867.702.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10867:170..3929+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCGGGCTGGAGGTTCTCAACGGTTCCTGGCGACACCCGTCGGCCTT
CGCGTCGCCGCACCAGCTGGTTCACCTGGCCCTCCGGGAGAAGGCCCGCC
GGCAGCGCGCGCTGGTCCGCGTCCTGATGGACGCTGGGGCGTGGGGGGCG
TCGTTGGGCGGGCGGGCGGCGCTCTCGGAGTGCGGGGAGAAGATCGCCGC
GGCGTCCAGGCTCTGCGAGCTGCAGCAGGCCGGGCTGGAGGTTCTCAACG
GTTCCTGGCGACACCCGTCGGCCTTCGCGTCGCCGCACCAGCTGGTTCAC
CTGGCCCTCCGGGAGAAGGCCCGCCGGCAGCGCGCGCTGGTCCGCGTCCT
GATGGACGCTGGGGCGTGGGGGGCGTCGTTGGGCGGGCGGGCGGCGCTCT
CGGAGTGCGGGGAGAAGATCGCCGCGGCGTCCAGGCTCTGCGAGCTGCAG
GACTCGATCTCGCGCAAGTCCGTCGGCGCGAAGGCGGCTGGTCTGCTGGA
AGACTGCGTCAAGCTCTCCCTACGGAGCAGGGAAGCGAGGGCGGGTGCGC
CGGCGGCGCGCGTGGCGGTTACGTCGGAACGGGATCGATACTTCGAGCAC
ACCCAGGGAGTGCTGGACGCCTTCGTGGAACTCCACACACCCAGGACTCG
ATCTCGCGCAAGTCCGTCGGCGCGAAGGCGGCTGGTCTGCTGGAAGACTG
CGTCAAGCTCTCCCTACGGAGCAGGGAAGCGAGGGCGGGTGCGCCGGCGG
CGCGCGTGGCGGTTACGTCGGAACGGGATCGATACTTCGAGCACACCCAG
GGAGTGCTGGACGCCTTCGTGGAACTCCACACACCCAGGCTGGACGAGGT
CGCCCCGTCTTCCTCCATCGACGGCGCCTCGCGGGCGCCCCTGGCGAAAG
CGCTGCTGTTCGACTCTTCCCTGGAGGACGGAGACAAGCTGCCCTTGCTC
GACCTCGTCTCGGTCGTCATCGCCGGCGTCTTCGAAGCCGCTCTCAGGCT
GGACGAGGTCGCCCCGTCTTCCTCCATCGACGGCGCCTCGCGGGCGCCCC
TGGCGAAAGCGCTGCTGTTCGACTCTTCCCTGGAGGACGGAGACAAGCTG
CCCTTGCTCGACCTCGTCTCGGTCGTCATCGCCGGCGTCTTCGAAGCCGC
TCTCAGGCACCGCGCGTCGGAGCGAAGCGTCTACCGCGCCGGGGTGAGAG
GCAAGCTGTGGACGGCGTCTAGCGAAGCCAGGCTTATCCTGTTCCGGCAG
CTCATGGCTTACAACGGAAGCATCGACGGAATCGGCCTGCAGGCACCGCG
CGTCGGAGCGAAGCGTCTACCGCGCCGGGGTGAGAGGCAAGCTGTGGACG
GCGTCTAGCGAAGCCAGGCTTATCCTGTTCCGGCAGCTCATGGCTTACAA
CGGAAGCATCGACGGAATCGGCCTGCAGGGTCCCGGGGCGGCGGGCCGTG
GCGGCGGCTCCGGCGAGGGGACCCGCGGGGTGATCGAGCGCCTCTCCGTG
CTGCTGCTCGACGGTTTCAAGGAAGAGAAGGACGCGAATCCCGCCGCTTC
GGGCCGAGGTCCCGGGGCGGCGGGCCGTGGCGGCGGCTCCGGCGAGGGGA
CCCGCGGGGTGATCGAGCGCCTCTCCGTGCTGCTGCTCGACGGTTTCAAG
GAAGAGAAGGACGCGAATCCCGCCGCTTCGGGCCGA
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