mRNA_E-fasciculatus_F_contig10866.701.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10866.701.1
Unique NamemRNA_E-fasciculatus_F_contig10866.701.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10866.701.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.320e-13
Identity = 60/162 (37.04%), Postives = 80/162 (49.38%), Query Frame = 2 
Query: 1004 PGPRPISKVLVVAGMIWVLSAVWPITLVIGLCGQSSQSETRRSRPAARRSAGSRVRSSPPVPNTWREGGWLVMMRARHQRSLARPKGYMAKLRQLREGRRKYSVEFPTATSGGPVRAGNQDDSDIELAEEGLSASRTGFRRVVVTVVAIEEEGLFRHIITYL 1489
            PG R +  +      + + + + P+ L I LC           R AAR  A  R+R+  P    W  GGWL+M+RARHQR LARPKG+  +LR+L        V              ++   ++EL E G S  R  F R V  VV I EEGLFRHII++L
Sbjct:  150 PGARALLGLTQFCLEMVICTLLGPLPLAILLCWYFHHFYVVVPRQAARERAVERLRTF-PGQRRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFNEANIV--------------HKIPPELELLEAGRS--RMNFVRAVTAVVEINEEGLFRHIISFL 294
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BLAST of mRNA_E-fasciculatus_F_contig10866.701.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.510e-7
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 2 
Query: 1220 MMRARHQRSLARPKGYMAKLRQLREGRRKYSVEFPTATSGGPVRAGNQDDSDIELAEEGLSASRTGFRRVVVTVVAIEEEGLFRHIITYL 1489
            MMRAR QRSLAR KG+ A+LR+L        +++           G+Q   +IEL E G    +  F R V   + I EEGLFRHII+YL
Sbjct:    1 MMRARRQRSLARSKGWQARLRKLDHYDEANIMKYAMRDF-----MGSQTPPEIELLEAGRL--KMNFVRAVTAAIEIPEEGLFRHIISYL 83
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BLAST of mRNA_E-fasciculatus_F_contig10866.701.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.590e-7
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 2 
Query: 1220 MMRARHQRSL-ARPKGYMAKLRQLREGRRKYSVEFPTATSGGPVRAGNQDDSDIELAEEGLSASRTGFRRVVVTVVAIEEEGLFRHIITYL 1489
            MMRARH+RS  AR KG+ A+LR+L        +++           G Q   +IEL E G    +  F R V+ VV I+EEGLFRHI++YL
Sbjct:    1 MMRARHERSSSARSKGWRARLRKLERYDEASIIKYAMRDF-----MGGQTPPEIELLEAGRL--KMNFVRAVIAVVEIQEEGLFRHIMSYL 84
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BLAST of mRNA_E-fasciculatus_F_contig10866.701.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.150e-5
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 2 
Query: 1220 MMRARHQRSLARPKGYMAKLRQLREGRRKYSVEFPTATSGGPVRAGNQDDSDIELAEEGLSASRTGFRRVVVTVVAIEEEGLFRHIITYL 1489
            M+RARHQRSL R  G+  +LR+L E   K ++              N+   ++EL E G S  R  F R  + VV   EEGLFRHII++L
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKL-ERYNKANIF-------------NKIPPELELLEAGRS--RMNFARAAMAVVETNEEGLFRHIISFL 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10866.701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FME9_ECTSI5.320e-1337.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC9_ECTSI2.510e-743.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI6.590e-742.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI2.150e-541.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10866contigE-fasciculatus_F_contig10866:484..3768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size2093
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10866.701.1prot_E-fasciculatus_F_contig10866.701.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10866 1085..2963 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.9416244-UTR-E-fasciculatus_F_contig10866:483..10841622927586.9416244-UTR-E-fasciculatus_F_contig10866:483..1084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10866 484..1084 -
1695995608.500156-UTR-E-fasciculatus_F_contig10866:483..10841695995608.500156-UTR-E-fasciculatus_F_contig10866:483..1084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10866 484..1084 -
1622927587.0053291-UTR-E-fasciculatus_F_contig10866:2963..37681622927587.0053291-UTR-E-fasciculatus_F_contig10866:2963..3768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10866 2964..3768 -
1695995608.5354142-UTR-E-fasciculatus_F_contig10866:2963..37681695995608.5354142-UTR-E-fasciculatus_F_contig10866:2963..3768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10866 2964..3768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.9595008-CDS-E-fasciculatus_F_contig10866:1084..14581622927586.9595008-CDS-E-fasciculatus_F_contig10866:1084..1458Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 1085..1458 -
1695995608.5086627-CDS-E-fasciculatus_F_contig10866:1084..14581695995608.5086627-CDS-E-fasciculatus_F_contig10866:1084..1458Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 1085..1458 -
1622927586.9716527-CDS-E-fasciculatus_F_contig10866:1983..20741622927586.9716527-CDS-E-fasciculatus_F_contig10866:1983..2074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 1984..2074 -
1695995608.5170147-CDS-E-fasciculatus_F_contig10866:1983..20741695995608.5170147-CDS-E-fasciculatus_F_contig10866:1983..2074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 1984..2074 -
1622927586.989344-CDS-E-fasciculatus_F_contig10866:2741..29631622927586.989344-CDS-E-fasciculatus_F_contig10866:2741..2963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 2742..2963 -
1695995608.5269368-CDS-E-fasciculatus_F_contig10866:2741..29631695995608.5269368-CDS-E-fasciculatus_F_contig10866:2741..2963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10866 2742..2963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10866.701.1

>prot_E-fasciculatus_F_contig10866.701.1 ID=prot_E-fasciculatus_F_contig10866.701.1|Name=mRNA_E-fasciculatus_F_contig10866.701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=229bp
MLLTPTVGRVLIPSHLAPPHPPEMCLLKVRRYVKFSRASTCDGSPTLPWI
LVVCVMLSFRDRRQICPGPRPISKVLVVAGMIWVLSAVWPITLVIGLCGQ
SSQSETRRSRPAARRSAGSRVRSSPPVPNTWREGGWLVMMRARHQRSLAR
PKGYMAKLRQLREGRRKYSVEFPTATSGGPVRAGNQDDSDIELAEEGLSA
SRTGFRRVVVTVVAIEEEGLFRHIITYL*
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mRNA from alignment at E-fasciculatus_F_contig10866:484..3768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10866.701.1 ID=mRNA_E-fasciculatus_F_contig10866.701.1|Name=mRNA_E-fasciculatus_F_contig10866.701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10866:484..3768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTGTGCCATGTCGCATTCGTCTGAGTGCTCTGACGATGCCAGCTGCGA
CGACGGTGATGACGGTTGGGATTTCCAATTCATCGGGGTGAGTATCTGGC
AGTTACCCGAGAACATTGATTGAAGCTCCATATCTCCACGGGGTCCCGCC
TCTACTACTGTCGGCGGGTCCCGTCTATTTTGGTTTTCTGCTTTCCTTTC
AGGAAAGGGAATGAGTTGGCAGCAAGTACCTACTGAAACCCCGGGCGCTT
GCCACGCGACGAACACGTTTGCTGGGTCTGCTCGTGAGGGCGATGGACGG
ATTCATGGGCTCGAATCTCCCCCATCCGGTCGTGTCAAGTGAAAGAGTCT
GACCTGATCTGAACCGGGATTCTAACTCGTTGGGCAGTGAAGTTAAGTTT
GTTCGGTTTCTGCTCCCGGTGTCCGCAATCTTGCCCTCAGATCCTCTACG
GCGTGATTGCGCTTATTTTCGCCACAAGCATGGGAGTTCAATTTTTCAAG
TGAGAGTGGTCCATAGTATAACCGGATAATGCGGCATTCAAGAGGTATTC
AAGGCAATGTCCAGCTTCCATTCGTGATCGTTTCGCCTTTGTCGTTGTTC
CTGCGCTTGTAAGGGCCCGTGCAGCCTGAGTTCGCCGTCATCGAGACAGC
GCAGACGCAAATGTACGGTAGTATACCTACTGATTGGCGGTGATGTTTGC
AAGAACACCAGATAGAGCACTTTCCTCTGTACAGCAGCAAGCAGCGCGGA
AGATCTGTCGTCCAACACATTACATACCGCTGCAACCCACACATTTTGGC
AATGAATGCTATTGACGCCTACAGTAGGTCGAGTTCTGATTCCGAGCCAT
CTCGCACCCCCCCACCCGCCAGAAATGTGCTTACTAAAGGTCCGGCGATA
TGTGAAATTTTCTCGCGCTTCTACATGTGATGGCTCCCCCACTCTCCCTT
GGATTTTGGTTGTTTGTGTCATGCTTTCTTTCAGGGACCGCCGGCAGATT
TGTCCAGGACCTCGCCCCATTTCCAAGGTAAAGTACGGTTGTCCTTGGGT
TTCTTATTTTATTAAACAATTTTGATGTCGAGAATCAAAATGCCAGGCAG
CCGTCTACGTCCAACCTGTAACCTAAAACATTCCATGGGAGGGACCCCGT
TTGCCCCCGCAAACATTCTCTAGCCTTGGGCCCAGCCTACGGTAATTGCA
TCATTTCGAATCAGCATTTGTCGAAGGCTGTCGTACTCTCGAAAGGTTGG
CGTCGCTTTCACCGTGCTATTGTACCGCGAAGCACTACTACTGTGAAATC
TATCATCCAACAACCTAGATGAAAAGAGCGCGAATGTATTTTCCGGCTGT
TGGATGCACAGTCTCCCTCCTCTTGTGTTTTTGTGCTTTTCCGTCCCTCT
TTTTCCAAATGATTCGCGCAGCGCCGTTTTCACAGCTACTTGGTGAAAAC
GTTTGTCTACAAACGTCAGCGGTACATACGTCCTGCCTGCGAATAATCTG
TTCCAGGGGACTGTTGCATACACACTAACCTCTTCCCTTGTGTTGTACCG
TTTACTTTTTTTCGACGACTTCGCCACGGTCAAGGCTAGGCACTATGCAT
ATGTGTCTCCCTCTCCAGCTATGATTTAGGGTGCCCTCGTTATGTCGCCC
ACGTGTCCGACTGCTTTTCCTGCCCTCGCCCAACCGGTTGTCAGGTCCTT
GTTGTGGCTGGCATGATCTGGGTTCTGTCTGCGGTATGGCCTATAACATT
GGTCATCGGGTTGTGCGGTCAATCATCTCAATCGGGTACGTACGGCCTCA
TCCCGTCAGTTCAGATTAGTTGCAAGTATTCAAGATGAAAAAGCTGGTTG
TGAATGGTGGAAAACCAGAGTTGAAGAACCCGCGAGGTATACGGCTCTCG
TCAATATCGAGTTCCGGGAAGCCAAGAAAAGGTCCAATTGTGTTTCTTCT
GGAATCATCACGGCTTTTTGGCAGCAGTCGTGCAGGAACAGTTCATGGCA
AGACGGGGGTTGGCTCCACCTAACCTGCATAGTCTAAACACACAAGAAGC
AACCAAATAACACCAGCCCATGTACGTACGTGCATCGCCAGTCGCCTACG
TCGTGGACTATAATGAATTGAAGGCGTGTCAACAATACTGCAGAGGTTGT
CCGTATCGTGAAACCGGAGACAAAGAAAGGTGCCAGCAGTAATATCAATT
AGAAAGGAGACATCAGCATGCGTTCCCAAAACCAACAAACCTGCTTGACT
GTATTGTAGTAACCCTCCCCCGCGTTTCCCCCGCATGGTCCTGGTCTTCT
GGCGTCGTAGAGACGCGAAGATCACGCCCGGCGGCGAGACGCTCAGCGGG
AAGTCGTGTACGGAGCTCCCCTCCTGTACCCAACACATGGCGAGAGGGAG
GCTGGCTCGTCATGATGCGCGCGCGCCACCAAAGGTCCCTGGCAAGACCC
AAGGGCTACATGGCGAAGCTGAGGCAGCTCAGAGAGGGCCGCCGAAAGTA
TTCCGTCGAATTTCCCACCGCCACTAGCGGTGGACCCGTCCGTGCAGGCA
ATCAGGACGATTCAGATATAGAGTTAGCAGAGGAGGGATTGTCAGCGTCT
AGGACAGGTTTTAGAAGGGTCGTTGTGACGGTCGTAGCGATCGAGGAGGA
AGGGTTGTTCCGACACATCATCACGTATCTTTAGGTATCCAGGTCGCGAA
CCCCGCCTTCTTTGGCGCCACGGAGAGAACCAGCACAGTAGTCGGGTACA
ACTTTAAGCACCTTTGACATTGAAAAGTGCTCGCTCTGGTATCAAAATAG
CTTGTCGACTCCCTGCGCGTATACCGATACCATCGCTGAGTGGTGGAGAG
TCTAGACTCCGATCGAGTTGGTATGAGGCAGAGTGGTCTAGACTAGGGCC
CAGAGAAAGTGGCCTTACCAATGCGACACCCGCACGCGTGCGTTGGTTGC
GAGCGGAGAACGGAGTATATAGTCTAGTTTGTCTCTCAACTATCCAGTCA
ATGGGGTGGTCGAAGACCCCCGAGGTCGAGCTCATGGAGGGGTTAGGGGG
GGGAGTCGCACAAACGCGCTTTTTTCTGGTGCGTGATCGAATTGCGGCGG
AATTTCTAGTCACCACCTCCTGCCGGTTGGAAGACCGTCGCAGCCAGCCA
TCGTTTCTCCTCTCTCGGAGGGAATCGCCCGGTTAGGGCCGCAACCACTC
GTTAATCGTAATCACGGCGGAGTTTGGGACTCCCTAGACAACATAGACAA
TACTCCTAACCATAACCACAAGAAGAGTATTCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10866:484..3768-

>mRNA_E-fasciculatus_F_contig10866.701.1 ID=mRNA_E-fasciculatus_F_contig10866.701.1|Name=mRNA_E-fasciculatus_F_contig10866.701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10866:484..3768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTATTGACGCCTACAGTAGGTCGAGTTCTGATTCCGAGCCATCTCGC
ACCCCCCCACCCGCCAGAAATGTGCTTACTAAAGGTCCGGCGATATGTGA
AATTTTCTCGCGCTTCTACATGTGATGGCTCCCCCACTCTCCCTTGGATT
TTGGTTGTTTGTGTCATGCTTTCTTTCAGGGACCGCCGGCAGATTTGTCC
AGGACCTCGCCCCATTTCCAAGATGCTATTGACGCCTACAGTAGGTCGAG
TTCTGATTCCGAGCCATCTCGCACCCCCCCACCCGCCAGAAATGTGCTTA
CTAAAGGTCCGGCGATATGTGAAATTTTCTCGCGCTTCTACATGTGATGG
CTCCCCCACTCTCCCTTGGATTTTGGTTGTTTGTGTCATGCTTTCTTTCA
GGGACCGCCGGCAGATTTGTCCAGGACCTCGCCCCATTTCCAAGGTCCTT
GTTGTGGCTGGCATGATCTGGGTTCTGTCTGCGGTATGGCCTATAACATT
GGTCATCGGGTTGTGCGGTCAATCATCTCAATCGGGTCCTTGTTGTGGCT
GGCATGATCTGGGTTCTGTCTGCGGTATGGCCTATAACATTGGTCATCGG
GTTGTGCGGTCAATCATCTCAATCGGAGACGCGAAGATCACGCCCGGCGG
CGAGACGCTCAGCGGGAAGTCGTGTACGGAGCTCCCCTCCTGTACCCAAC
ACATGGCGAGAGGGAGGCTGGCTCGTCATGATGCGCGCGCGCCACCAAAG
GTCCCTGGCAAGACCCAAGGGCTACATGGCGAAGCTGAGGCAGCTCAGAG
AGGGCCGCCGAAAGTATTCCGTCGAATTTCCCACCGCCACTAGCGGTGGA
CCCGTCCGTGCAGGCAATCAGGACGATTCAGATATAGAGTTAGCAGAGGA
GGGATTGTCAGCGTCTAGGACAGGTTTTAGAAGGGTCGTTGTGACGGTCG
TAGCGATCGAGGAGGAAGGGTTGTTCCGACACATCATCACGTATCTTTAG
AGACGCGAAGATCACGCCCGGCGGCGAGACGCTCAGCGGGAAGTCGTGTA
CGGAGCTCCCCTCCTGTACCCAACACATGGCGAGAGGGAGGCTGGCTCGT
CATGATGCGCGCGCGCCACCAAAGGTCCCTGGCAAGACCCAAGGGCTACA
TGGCGAAGCTGAGGCAGCTCAGAGAGGGCCGCCGAAAGTATTCCGTCGAA
TTTCCCACCGCCACTAGCGGTGGACCCGTCCGTGCAGGCAATCAGGACGA
TTCAGATATAGAGTTAGCAGAGGAGGGATTGTCAGCGTCTAGGACAGGTT
TTAGAAGGGTCGTTGTGACGGTCGTAGCGATCGAGGAGGAAGGGTTGTTC
CGACACATCATCACGTATCTTTAG
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