mRNA_E-fasciculatus_F_contig10862.699.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10862.699.1
Unique NamemRNA_E-fasciculatus_F_contig10862.699.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: D7G512_ECTSI (Cathepsin-like proteinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G512_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.670e-39
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 1
Query:   10 QYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIVADATVE 213
            +YCEPLEIDHAVLIVGYGEEDGVK+WIIKNSWKYLWGERGYYRLVRGVNACGIAD+VTTIIVADATVE
Sbjct:  395 EYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE 462          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A6H5JC15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC15_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.640e-38
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 1
Query:   10 QYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIVADATVE 213
            +YCEPLEIDHAVLIVGYGEEDGVK+WIIKNSWKYLWGE+GYYRLVRGVNACGIAD+VTTIIVADATVE
Sbjct:  440 KYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGEQGYYRLVRGVNACGIADDVTTIIVADATVE 507          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A836CK28_9STRA (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK28_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.190e-20
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   16 CEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIVAD 201
            CEP  +DHAVL+VG+GE+DGV++W++KNSW   WGE GYYR+V+G N CG+A+   T ++ D
Sbjct:  264 CEPTTLDHAVLVVGFGEQDGVEYWVVKNSWGSWWGEGGYYRVVKGQNHCGLANFAVTSVIKD 325          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: F0Y012_AURAN (Pept_C1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y012_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 5.860e-20
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    4 HEQYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEV 180
            HE  C+P  +DHAVLIVGYG++D + +W+IKNSW   WGE GYYRLVRG NACG+A+ V
Sbjct:  185 HEVPCDPDSLDHAVLIVGYGDDD-INYWVIKNSWGSEWGEAGYYRLVRGTNACGVANMV 242          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A1I8AFD4_9BILA (Pept_C1 domain-containing protein n=2 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AFD4_9BILA)

HSP 1 Score: 85.9 bits (211), Expect = 1.020e-19
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 HEQYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIV 195
            HE+ C P E DHAVL+VG+G E GV FWI+KNSW   WGE GY+R+ RG N CGIAD   + +V
Sbjct:   86 HEE-CNPEEPDHAVLLVGFGAEAGVPFWIVKNSWGADWGEAGYFRIFRGGNTCGIADNAVSAVV 148          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A7S2BCN1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BCN1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.310e-19
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   16 CEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIV 195
            CEP  +DHAVL+VGYG ED + +W+IKNSW  LWGE GYYRLVRG N CG+A+   T ++
Sbjct:  424 CEPTALDHAVLLVGYGTEDDIPYWLIKNSWGDLWGEDGYYRLVRGSNHCGVANFAITSVI 483          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A4U5PF29_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5PF29_STECR)

HSP 1 Score: 88.6 bits (218), Expect = 2.520e-19
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   10 QYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIV 195
            Q C+P E+DHAVL+VGYG E+ V FWI+KNSW   WGE GY+R+ RG N CGIA++  + +V
Sbjct:  269 QECDPSELDHAVLLVGYGTENDVPFWIVKNSWGADWGESGYFRIFRGGNTCGIAEDAASAVV 330          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A811JS67_9BILA (Hypothetical protein n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811JS67_9BILA)

HSP 1 Score: 88.6 bits (218), Expect = 2.690e-19
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 PHEQYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIV 195
            P + +C P  ++HA+L+VGYGEE+G  FWI+KNSW   WGE GY+RL RG N CG+A+  T+ I+
Sbjct:  272 PPKMFCNPKALNHALLLVGYGEEEGKPFWIVKNSWGTGWGEEGYFRLYRGENVCGVAELATSAII 336          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: A0A8J4SNU0_9TREM (Cysteine proteinase n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4SNU0_9TREM)

HSP 1 Score: 84.3 bits (207), Expect = 3.040e-19
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 PHEQYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVTTIIV 195
            P +  C+P E++HAVL VGYG ++G+ +WIIKNSW   WGE GY+RL RG   CGI  +V++ I+
Sbjct:   72 PSKDECDPEELNHAVLTVGYGTKNGIPYWIIKNSWGTSWGENGYFRLYRGDGTCGIEQDVSSAII 136          
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Match: F0YNG5_AURAN (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNG5_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 3.180e-19
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   10 QYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRGVNACGIADEVT 183
            ++C+P  +D   L+VGYGE+DG+ +W++KN+W  +WGE GYYR+VRGVN CGIA+  T
Sbjct:   37 KHCDPDTLDVHALLVGYGEQDGLHYWVVKNAWGDMWGEDGYYRVVRGVNHCGIANFAT 94          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10862.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G512_ECTSI2.670e-3995.59Cathepsin-like proteinase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JC15_9PHAE2.640e-3894.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CK28_9STRA1.190e-2056.45Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
F0Y012_AURAN5.860e-2064.41Pept_C1 domain-containing protein n=1 Tax=Aureococ... [more]
A0A1I8AFD4_9BILA1.020e-1959.38Pept_C1 domain-containing protein n=2 Tax=Steinern... [more]
A0A7S2BCN1_9STRA1.310e-1961.67Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A4U5PF29_STECR2.520e-1958.06Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
A0A811JS67_9BILA2.690e-1953.85Hypothetical protein n=1 Tax=Bursaphelenchus okina... [more]
A0A8J4SNU0_9TREM3.040e-1952.31Cysteine proteinase n=1 Tax=Paragonimus heterotrem... [more]
F0YNG5_AURAN3.180e-1955.17Pept_C1 domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10862contigE-fasciculatus_F_contig10862:4440..4655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue2.6e-32
Seed eggNOG ortholog2880.D7G512
KEGG koko:K01373
KEGG Pathwayko04142,ko04210,map04142,map04210
EggNOG free text desc.Belongs to the peptidase C1 family
EggNOG OGsCOG4870@1,KOG1542@2759
EC3.4.22.41
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.8406422-CDS-E-fasciculatus_F_contig10862:4439..46551622927586.8406422-CDS-E-fasciculatus_F_contig10862:4439..4655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10862 4440..4655 -
1695995608.4488492-CDS-E-fasciculatus_F_contig10862:4439..46551695995608.4488492-CDS-E-fasciculatus_F_contig10862:4439..4655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10862 4440..4655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10862.699.1prot_E-fasciculatus_F_contig10862.699.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10862 4440..4655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10862.699.1

>prot_E-fasciculatus_F_contig10862.699.1 ID=prot_E-fasciculatus_F_contig10862.699.1|Name=mRNA_E-fasciculatus_F_contig10862.699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
PHEQYCEPLEIDHAVLIVGYGEEDGVKFWIIKNSWKYLWGERGYYRLVRG
VNACGIADEVTTIIVADATVE*
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mRNA from alignment at E-fasciculatus_F_contig10862:4440..4655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10862.699.1 ID=mRNA_E-fasciculatus_F_contig10862.699.1|Name=mRNA_E-fasciculatus_F_contig10862.699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10862:4440..4655- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCACGAACAGTACTGCGAACCGCTCGAGATCGACCACGCCGTCTTGAT CGTGGGCTACGGCGAAGAAGACGGTGTCAAGTTCTGGATCATCAAGAACT CTTGGAAGTACTTGTGGGGAGAGCGTGGCTACTACCGGCTAGTACGAGGC GTGAACGCCTGCGGTATTGCGGACGAGGTCACCACCATCATCGTGGCTGA CGCGACGGTCGAATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10862:4440..4655-

>mRNA_E-fasciculatus_F_contig10862.699.1 ID=mRNA_E-fasciculatus_F_contig10862.699.1|Name=mRNA_E-fasciculatus_F_contig10862.699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10862:4440..4655- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCACGAACAGTACTGCGAACCGCTCGAGATCGACCACGCCGTCTTGAT
CGTGGGCTACGGCGAAGAAGACGGTGTCAAGTTCTGGATCATCAAGAACT
CTTGGAAGTACTTGTGGGGAGAGCGTGGCTACTACCGGCTAGTACGAGGC
GTGAACGCCTGCGGTATTGCGGACGAGGTCACCACCATCATCGTGGCTGA
CGCGACGGTCGAATAACCCCACGAACAGTACTGCGAACCGCTCGAGATCG
ACCACGCCGTCTTGATCGTGGGCTACGGCGAAGAAGACGGTGTCAAGTTC
TGGATCATCAAGAACTCTTGGAAGTACTTGTGGGGAGAGCGTGGCTACTA
CCGGCTAGTACGAGGCGTGAACGCCTGCGGTATTGCGGACGAGGTCACCA
CCATCATCGTGGCTGACGCGACGGTCGAATAA
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