mRNA_E-fasciculatus_F_contig1086.696.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1086.696.1
Unique NamemRNA_E-fasciculatus_F_contig1086.696.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1086.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1086contigE-fasciculatus_F_contig1086:3460..8821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size686
Cds size684
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.5763795-CDS-E-fasciculatus_F_contig1086:3459..35361622927586.5763795-CDS-E-fasciculatus_F_contig1086:3459..3536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 3460..3536 +
1695995608.2883244-CDS-E-fasciculatus_F_contig1086:3459..35361695995608.2883244-CDS-E-fasciculatus_F_contig1086:3459..3536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 3460..3536 +
1622927586.5905464-CDS-E-fasciculatus_F_contig1086:4712..48011622927586.5905464-CDS-E-fasciculatus_F_contig1086:4712..4801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 4713..4801 +
1695995608.2972643-CDS-E-fasciculatus_F_contig1086:4712..48011695995608.2972643-CDS-E-fasciculatus_F_contig1086:4712..4801Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 4713..4801 +
1622927586.6058996-CDS-E-fasciculatus_F_contig1086:5412..54421622927586.6058996-CDS-E-fasciculatus_F_contig1086:5412..5442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 5413..5442 +
1695995608.3069005-CDS-E-fasciculatus_F_contig1086:5412..54421695995608.3069005-CDS-E-fasciculatus_F_contig1086:5412..5442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 5413..5442 +
1622927586.6226788-CDS-E-fasciculatus_F_contig1086:6086..61441622927586.6226788-CDS-E-fasciculatus_F_contig1086:6086..6144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 6087..6144 +
1695995608.316966-CDS-E-fasciculatus_F_contig1086:6086..61441695995608.316966-CDS-E-fasciculatus_F_contig1086:6086..6144Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 6087..6144 +
1622927586.6345215-CDS-E-fasciculatus_F_contig1086:6687..67861622927586.6345215-CDS-E-fasciculatus_F_contig1086:6687..6786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 6688..6786 +
1695995608.3254051-CDS-E-fasciculatus_F_contig1086:6687..67861695995608.3254051-CDS-E-fasciculatus_F_contig1086:6687..6786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 6688..6786 +
1622927586.6444695-CDS-E-fasciculatus_F_contig1086:7101..72121622927586.6444695-CDS-E-fasciculatus_F_contig1086:7101..7212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 7102..7212 +
1695995608.3353367-CDS-E-fasciculatus_F_contig1086:7101..72121695995608.3353367-CDS-E-fasciculatus_F_contig1086:7101..7212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 7102..7212 +
1622927586.654013-CDS-E-fasciculatus_F_contig1086:7801..78731622927586.654013-CDS-E-fasciculatus_F_contig1086:7801..7873Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 7802..7873 +
1695995608.3449786-CDS-E-fasciculatus_F_contig1086:7801..78731695995608.3449786-CDS-E-fasciculatus_F_contig1086:7801..7873Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 7802..7873 +
1622927586.665725-CDS-E-fasciculatus_F_contig1086:8197..82691622927586.665725-CDS-E-fasciculatus_F_contig1086:8197..8269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 8198..8269 +
1695995608.3566687-CDS-E-fasciculatus_F_contig1086:8197..82691695995608.3566687-CDS-E-fasciculatus_F_contig1086:8197..8269Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 8198..8269 +
1622927586.6775312-CDS-E-fasciculatus_F_contig1086:8745..88211622927586.6775312-CDS-E-fasciculatus_F_contig1086:8745..8821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 8746..8821 +
1695995608.3646612-CDS-E-fasciculatus_F_contig1086:8745..88211695995608.3646612-CDS-E-fasciculatus_F_contig1086:8745..8821Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1086 8746..8821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1086.696.1prot_E-fasciculatus_F_contig1086.696.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1086 3460..8821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1086.696.1

>prot_E-fasciculatus_F_contig1086.696.1 ID=prot_E-fasciculatus_F_contig1086.696.1|Name=mRNA_E-fasciculatus_F_contig1086.696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
TNHSSRQSSDQGLLDQPKNNRGRLRWYYHHRCCIMPVNKMLSGLALLLCS
SLMANVAAETTSSPADINPCLDPSTGRTVSETGTLDLSSCNLEDTDIEAL
IAYIQAVIDTTATPIVELNLSGNSLTQLTASGSGRRALLPSDSIFAGLED
TLEVLDLSDNEIEDIGTGEFDGLDNLVALDVSDNEISELEGEAFEGLTSL
TTLSISNNPIENIDPDTLALLQALLLL*
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mRNA from alignment at E-fasciculatus_F_contig1086:3460..8821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1086.696.1 ID=mRNA_E-fasciculatus_F_contig1086.696.1|Name=mRNA_E-fasciculatus_F_contig1086.696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5362bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1086:3460..8821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAAACCACTCCTCCCGCCAGAGCTCCGACCAAGGCCTACTTGATCAACC
GAAGAACAACCGAGGACGTCTTCGGTGGTAGGTACAGTATAGTATTTACA
GGAATTCGCTCTCTACTCTGTCTGGTATGGTTGTCTAGCATAATTGATTG
CTGTCATCCGCTATTGTAATGTCCTCCCGTTGTTGTTCCATGCAGTTGTG
TGGTCGTGACAAACAGTCTTTGCGGCTTCTTGCATTTTCCCTCTCTGCTA
ACATCATACGAAGGCCATGGAGTCCATGTTCACTCCATCGTTTGAAGCTA
AGATCTCCACAAACATCAATTCCGGTCAAGCGGATGAAAGCTTAGGGTGA
GGGTGAAGGCTTGACGCTATTCCAACATCAGCTCCGTGTACTGAAGTATG
GGAATGAATTTACCTTGCGGGTAGATCTGCACATCGATCGAATGAGAGAG
CGAGAGTGAAACAGAGAGGCCATTGTAACCAGCTAACGTGTTCCCACCGT
CTGGTTTTTCGTGCATAACAGCAAGAGCAGAACGAACGGTGCCTGCATCG
AGCATGTAGCTGATGGAGTTGAAACACATGGCGACGTGGTGTGTCACACG
GCCACCGCCCTCTTTGATACCACAATAGAGTGGGATCGAAAGCAAGCAGG
TTGAGAAAAAATCGTTAGGATGGAGCGTCTGTTGTTTCAACCCTAGGGGG
CTATCGCAATTCCAAAAGAACGATTTTACAACTTGGTGCAATTGAAGATG
GTGTTTAGGAGGGACATCCACAGGGTCGGAAGCAGGCGTATTCAACGTCA
GTTTTCCGCACATTGACAAGTTGTTAGCGACTGCCAGCACAATGAAGGAG
GGCAGAACCCTTTATTGGGCGCACGTTTCCTCTTACAGATAGATGAGAAC
CGGATAAGCAGGTATTCGGCACCTGAAGAAATCGCCGACGGTTTCAATTA
TTACCCCGGGCGTGTGTTGGAGCTAGCCGGTCAATATATCACTGCTAGGG
AAATAACTGCAGGCCCGTCGTCGAATGCCGGTTCCGCAAGTAAGTTTGGC
TCGTCTGAGCTTGATTATTTGGCTCTATTTCTCGTCGAAAGTTTTCCATG
TAGCATGCCAAGATTACGCTGCCTGCTACCAGGTTTGAAAAAGATGGAAT
CTTCTGCGCTGCACGAACCCCAACACGCAGGTCCGCGTAACTTCCATACA
CCTCACTCTCTTGACCCCCCCTGTCGTTGGTGGCCCACTCGTTTGTCTCT
CAGGTACTACCACCATCGCTGCTGCATCATGCCCGTGAACAAGATGCTCT
CCGGTCTGGCTTTGCTGCTCTGCTCATCCTTGATGGCGAACGGTAGGTAC
CTTGGTGAAACACACGATATTTAGTACCTACACCGTGTTTAGTAGACTCG
AGCATTTTTCAGCAAAACCTCTGAGCCCTTTGCGTTTGAAATGCCTCTGA
GTAAGTCATTCGAGTATCCCACCCGTACTCAGGAGTTGAGTGATGATTTC
AATATTCTTCGACTCAACCTACCCAGATGTCGAGAAAGTATCGAGTATTT
TGCTTCCTCAGAGTACACGCTTAGGAGCACCCTACGGAATTTTCCCACCC
TTGATAGGTTGCTGCCCACGCTAGATGTGTTCAAAGAGATTCAGTTGCCC
GGTAGGGGGATGCGTGACCCTTTGTAGTTCTTCTTCTGCGCTCCATTCAG
AGCAACCGGCCGCCGGCGCTTCACGAGACGTTGACGGAAGGGTTTTCGCG
CACGGCAACGGTGGTTGAGGTTGACTAACTTAGCCGAGAGCAGTCGAACA
AACATATTGGGCAAATGCGCAACCTCCTGAGTGACACGGGGCAGAAAGTC
AACGAAGAATGAAAGTCTGTGTAGACGCGCTAGATTATTAACCCGACCAC
TTGTACTTTTCGTCGCCCCGTTCGTTCAATGACTACCCGGAATCGCTGAG
CAGTCGCGGCTGAGACAACGTCGTCACCGGCAGGTGCGGTGTGTGAAAAT
AGTCGCCACACAAGTACCACTGACGTTGGCTAGTGTAGAAAGCTTTGGTC
GTGTCCCGTCTGAAGAACACTTTAATCCGTACTGCAAGGAAGGAAGCACG
AAGGAAGCTCCTTCGAGTTCGGGATAACTTTACCACCCAAGGTTTAGGGT
GGCATCAAACGTAACGAAGGTCCCCAAGTAGTCTCAGACTTGATCTTGAA
CCGTTGCCTTGCCCCATGAAGTTGTAAACAGAGAATCCCGCCCTGTCGAC
ATTTTCGGGGAAAGGAACGCAACGTTGCTGCTACGTTGTCGATTTTGTTG
TAGCCTTCACTCGAAACGAGCCCCTACCAGGACGTCGCATGCAAACAATA
TTTTTCTCGGAGAAACTGTCCTCGGACCCCTATAACCCCAAGAATGCTTG
TTTTCGCCGCTCGGCTGAGCGGGTTTTCATACTCCGTGAAAACGAAAGGT
TCTCTTTGAGATCTTCACCCCCCCGTTAAAAGAGTTATCTCATTAACAGC
ACGTTGGTGTCGGTGGCAACAACCACCTGAGAAAACTCCCCCTCTTTCTG
ATGATTGTACTTTATTATAGTATATATTTGTTACTTTGGATTTTGTCTGG
CTCTCTGTTTACTCGCCTTCGCTTCAGACATCAACCCATGCTTGGACCCC
TCTACCGGCCGGACCGTTTCCGAGACCGGCACCCTGTGAGTTACTACCAT
ACAGTAGTGCTTAGCCGCGGCCGCAGTAGCGGTCCGGGAATACTGTAGTA
GAGTTTCAATTCTCCCCGACCGACGTTTCGGATGCATCATGAGAAAGCGA
AGAGCATTAATCCAAACGAGGAAGTAGGCAAACGGCATTGGGCTCCCATT
CAATTCCCATCGCGGCCTCATGTGCCTACCGCTTTGTCCTTCGGTTCACG
TTGACTTCAACCTTTCAACCATCACTTGCGCGTCCGCAGGTTACTGTAGA
TCGACCATCCGTTAGATCGACCATCCGTTTTGTTGGTGCGTGATACGTGG
GGCTTATGCAATTTCCCGTTCTAAAGCACGACGTCGTGTGCATCCATAAC
GAACGGCAACGACATCATCATCGTGCGCTGTGCGCGCTTAGCCCTTTTTT
ATTCGGAATACTTCACCTCGCTGCTTCAAAGATATTCCTACTTGGTAAAA
ATAGCAGACACGGCCCAGGAGAGTTGCGGGCATCAATGTGCTCTGTTACG
TGTGAACACTTCGTGTGAACCCATGCAGGGACTTGTCAAGCTGCAACCTC
GAGGACACCGACATCGAAGCGCTAATTGCTTACATCCAGGCTGTCATCGA
CACAACCGCGACACCAATCGTCGAACTGTGAGCAAGGCGGTAGCAACCTG
CACGTTTGTAGTGGATCGGGGATGATCACTGGGAGGGTGCCGAAACATCA
ACCTTGTACACTCCACGAGCCACGCGTTCTCATTGTCTCATGTCTCTGGT
TTGGAGTGGAAAGAAGCCTATTTGACGGAAGCTGCTGGTTGTGTTCTGAG
TGGTTGCATACCTTGCACCCACGAGGCAGGATGGTCAAGTCGGTGGCGGC
AAACGAAACACTCGGTAGGCACTTTCCCGACGACGGCCACCTCCGCCCCT
AACTCACTATTTCCACACACACACCTCGCGCAAATGCTACAGGAACCTTT
CGGGTAACTCGCTGACGCAGCTTACAGCGTCTGGATCGGGCCGTCGGGCC
CTGCTCCCATCCGACAGCATCTTTGCCGGTCTGGAAGACACGCTCGAAGT
TTTGTAAGCGCGAATGGTTGAGGAATATGTTTGGCTACTCTCTTGCCGTG
TCACATTGCAGAGTTACGACTCGCTTCATGCACCGAATCTTTGCTTCTTC
TCCATATGTTCCGCTTGGTGTTGTCATGTATGGGATGTATGTCCGACGAT
TGAACAACCGTGTTGAAACGCCATCGTATCCGTGATGTGATCCACAGTTT
GTTCGCGCAAGTAACATGTTCTCTCGGTTCCATACGCCGTAGTGGAAGCC
CCTATTCGTTTTTGTACATGACCCAAGGAACGTCCAACCCTTCAAACATT
TGTTTGAGACACGAAGATATTCAGCTACACCGTAGAGGATTTTTATGCTT
GTGACCCCTGACCGTGTCTCTTCAGTTAACCGTTCGACAATCAACAACGG
CCTTCGAGCGATGACAAGCATGCGAGAAGGCGACAGGCACGAACAGAGAA
GACATTCGAAAAGCTCACCCACTAGCTGGATCATCTATCGTGTACTCGTG
TAGTCTTATTGCCATAGGATTTTGGGGTTCGTCTTACGTGTACCTCCCCG
CTACATGCGATTGCCACTGCTTCTCGTGTTATGTGTTGGCAGGGACCTGT
CCGACAATGAAATCGAGGACATTGGCACCGGCGAATTCGACGGGCTGGAC
AATTTGGTCGCCTTGTGAGTGGTGACTTCAGCGCTGTGTGTGTGCGGTAC
CAAGATGAGTATTCGTTTCAAAAAATAAATAGCTTCGTATACAATAGACT
TCATCCGTTGTTGGAGCTGCCACAGGCACGTTTGGCCGCTGCAAGGGGTA
CCATATTTTCCGTGAGTGCTACGATCGTCGTCTTTGGAAGATGAAGGTAG
CGCAGCATCTCGGCCTTTCCCTCAGGAAAAAGGCACGGGCACAATCTTTC
GAGGCCCCACTCATATTATTGTTGCTATTGTCAGCGCAACTCGTCCGTTT
TTGCTCGCCTCTTGCGCTTCCTTCATCAACGGTGGCAGGGATGTGTCCGA
CAACGAGATTTCTGAGCTTGAAGGCGAGGCCTTCGAAGGGTTGACATCTC
TGACTACGCTGTAAGTGGGGGTTCGCGGCATGTTTCCCGGATGTTTGTGT
GCACGCCATGCAATCCCATGTGTCGTCGTACGAGCGTGAACCGTGCGCTG
CTATCGACGTAGTTTCAAACCGTACTGTCTTTTTGAACGCAGAGAACAAC
ATCTACAAATCATGTTTCGTTTATGTGCTATGACTACTTCAGACGATGTC
GACCAGGCAGATTTCTTTGCCTCTAGGTCTTCCTTGCGGTGGGCTTCCAG
CGCATTCTTGACCACGGTCGTTCTAGGAAGTCAGACGTTGTCTTCGATAG
GGCGCGAAAGTTCCGAAACTTGAAGGTCGGGTCCTAACATGCCGCATGTT
ACACTAATTATCGTTTTACATACACCCGTGTACCTTGGAGATGTCCATAC
TAACTGAATGCACGTGTCCTTTCGCGTTTTGCTGGTCGTTTCTCTCCGCA
ACTTGTCGCCGTAAATGAATGTGCTGATGACACCAGGAGTATCTCCAACA
ACCCGATCGAAAACATTGACCCAGACACCTTGGCGCTATTGCAGGCTCTC
CTACTACTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1086:3460..8821+

>mRNA_E-fasciculatus_F_contig1086.696.1 ID=mRNA_E-fasciculatus_F_contig1086.696.1|Name=mRNA_E-fasciculatus_F_contig1086.696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1086:3460..8821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACAAACCACTCCTCCCGCCAGAGCTCCGACCAAGGCCTACTTGATCAACC
GAAGAACAACCGAGGACGTCTTCGGTGACAAACCACTCCTCCCGCCAGAG
CTCCGACCAAGGCCTACTTGATCAACCGAAGAACAACCGAGGACGTCTTC
GGTGGTACTACCACCATCGCTGCTGCATCATGCCCGTGAACAAGATGCTC
TCCGGTCTGGCTTTGCTGCTCTGCTCATCCTTGATGGCGAACGGTACTAC
CACCATCGCTGCTGCATCATGCCCGTGAACAAGATGCTCTCCGGTCTGGC
TTTGCTGCTCTGCTCATCCTTGATGGCGAACGTCGCGGCTGAGACAACGT
CGTCACCGGCAGTCGCGGCTGAGACAACGTCGTCACCGGCAGACATCAAC
CCATGCTTGGACCCCTCTACCGGCCGGACCGTTTCCGAGACCGGCACCCT
ACATCAACCCATGCTTGGACCCCTCTACCGGCCGGACCGTTTCCGAGACC
GGCACCCTGGACTTGTCAAGCTGCAACCTCGAGGACACCGACATCGAAGC
GCTAATTGCTTACATCCAGGCTGTCATCGACACAACCGCGACACCAATCG
TCGAACTGGACTTGTCAAGCTGCAACCTCGAGGACACCGACATCGAAGCG
CTAATTGCTTACATCCAGGCTGTCATCGACACAACCGCGACACCAATCGT
CGAACTGAACCTTTCGGGTAACTCGCTGACGCAGCTTACAGCGTCTGGAT
CGGGCCGTCGGGCCCTGCTCCCATCCGACAGCATCTTTGCCGGTCTGGAA
GACACGCTCGAAGTTTTGAACCTTTCGGGTAACTCGCTGACGCAGCTTAC
AGCGTCTGGATCGGGCCGTCGGGCCCTGCTCCCATCCGACAGCATCTTTG
CCGGTCTGGAAGACACGCTCGAAGTTTTGGACCTGTCCGACAATGAAATC
GAGGACATTGGCACCGGCGAATTCGACGGGCTGGACAATTTGGTCGCCTT
GGACCTGTCCGACAATGAAATCGAGGACATTGGCACCGGCGAATTCGACG
GGCTGGACAATTTGGTCGCCTTGGATGTGTCCGACAACGAGATTTCTGAG
CTTGAAGGCGAGGCCTTCGAAGGGTTGACATCTCTGACTACGCTGGATGT
GTCCGACAACGAGATTTCTGAGCTTGAAGGCGAGGCCTTCGAAGGGTTGA
CATCTCTGACTACGCTGAGTATCTCCAACAACCCGATCGAAAACATTGAC
CCAGACACCTTGGCGCTATTGCAGGCTCTCCTACTACTGTGAGAGTATCT
CCAACAACCCGATCGAAAACATTGACCCAGACACCTTGGCGCTATTGCAG
GCTCTCCTACTACTGTGA
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