mRNA_E-fasciculatus_F_contig10852.691.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10852.691.1
Unique NamemRNA_E-fasciculatus_F_contig10852.691.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: D7FL41_ECTSI (WD40 repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL41_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.170e-18
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV
Sbjct:    1 MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 36
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A836C989_9STRA (WD40 repeat-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C989_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.060e-13
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            MN VILATAGYDHK++FWEPPSG C  TLR+SDSQV
Sbjct:    1 MNSVILATAGYDHKVNFWEPPSGVCSRTLRYSDSQV 36
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: K8Z5Y7_NANGC (Wd40 component of tor1 and tor2 kinase complex (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z5Y7_NANGC)

HSP 1 Score: 57.0 bits (136), Expect = 3.940e-10
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            V+LATAGYDHKI FWE P+G C  ++R+ DSQV
Sbjct:    6 VVLATAGYDHKIRFWEAPTGVCARSIRYPDSQV 38
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A6U2PBM4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2PBM4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.020e-9
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            VILATAGYDHKI FWE PSG C  TLR+ DSQV
Sbjct:    3 VILATAGYDHKIRFWEAPSGICSRTLRYPDSQV 35
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A7S3LCW6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCW6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.950e-9
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            V+LAT GYDHKI FWE PSG+C+  ++FSDSQV
Sbjct:    3 VVLATGGYDHKICFWEAPSGKCQRVIKFSDSQV 35
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A4Y7L320_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L320_PAPSO)

HSP 1 Score: 57.0 bits (136), Expect = 8.320e-9
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            VILATAGYDH I FWEP SG C  TL++ DSQ+
Sbjct:   93 VILATAGYDHTIRFWEPKSGRCYRTLQYPDSQI 125
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A7S2G3P5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G3P5_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 9.030e-9
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            M++V+LATAGYDH I FWE PSG C  TL   +SQV
Sbjct:   19 MSQVLLATAGYDHTIKFWEAPSGICNKTLTHPESQV 54
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A5D6YF95_9STRA (Target of rapamycin complex subunit LST8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF95_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            M+ V+LATAGYDH I FWE  SG C  T++F+DSQV
Sbjct:    1 MSGVVLATAGYDHSIRFWEAASGTCNRTVKFADSQV 36
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BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: UPI000E6F71D0 (target of rapamycin complex subunit LST8 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F71D0)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-8
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            VILATAGYDH I FWEP SG C  TL++ DSQ+
Sbjct:    6 VILATAGYDHTIRFWEPKSGRCYRTLQYPDSQI 38
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Match: A0A4D9DF34_9STRA (Target of rapamycin complex subunit LST8 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF34_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 VILATAGYDHKIHFWEPPSGECRSTLRFSDSQV 108
            V+LATAGYDHKI FWE P+G C  ++R+ DSQV
Sbjct:    5 VVLATAGYDHKIRFWEAPTGVCARSIRYPDSQV 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10852.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL41_ECTSI4.170e-18100.00WD40 repeat containing protein n=1 Tax=Ectocarpus ... [more]
A0A836C989_9STRA3.060e-1380.56WD40 repeat-containing protein n=1 Tax=Tribonema m... [more]
K8Z5Y7_NANGC3.940e-1066.67Wd40 component of tor1 and tor2 kinase complex (Fr... [more]
A0A6U2PBM4_9STRA1.020e-978.79Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3LCW6_9STRA3.950e-969.70Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A4Y7L320_PAPSO8.320e-969.70Uncharacterized protein n=1 Tax=Papaver somniferum... [more]
A0A7S2G3P5_9EUKA9.030e-963.89Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A5D6YF95_9STRA1.290e-863.89Target of rapamycin complex subunit LST8 n=1 Tax=P... [more]
UPI000E6F71D01.810e-869.70target of rapamycin complex subunit LST8 n=1 Tax=P... [more]
A0A4D9DF34_9STRA1.870e-866.67Target of rapamycin complex subunit LST8 n=3 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10852contigE-fasciculatus_F_contig10852:3389..3496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue8e-14
Seed eggNOG ortholog2880.D7FL41
Preferred nameMLST8
KEGG koko:K08266
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04714,map04136,map04138,map04140,map04150,map04151,map04714
GOsGO:0000139,GO:0001558,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005829,GO:0005886,GO:0006355,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007190,GO:0007492,GO:0007498,GO:0008047,GO:0008064,GO:0008104,GO:0008150,GO:0008361,GO:0009267,GO:0009605,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016043,GO:0016241,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019897,GO:0019898,GO:0022402,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030100,GO:0030234,GO:0030295,GO:0030587,GO:0030832,GO:0030833,GO:0030838,GO:0030950,GO:0030952,GO:0031090,GO:0031152,GO:0031234,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031334,GO:0031399,GO:0031401,GO:0031410,GO:0031505,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0031930,GO:0031931,GO:0031932,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0033674,GO:0034399,GO:0034504,GO:0034613,GO:0035556,GO:0038201,GO:0038202,GO:0038203,GO:0040008,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043327,GO:0043519,GO:0043520,GO:0043539,GO:0043549,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045229,GO:0045786,GO:0045793,GO:0045806,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0046626,GO:0046628,GO:0048382,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0050730,GO:0050731,GO:0050764,GO:0050765,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051338,GO:0051347,GO:0051493,GO:0051495,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051896,GO:0051897,GO:0060255,GO:0060627,GO:0061586,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071496,GO:0071554,GO:0071555,GO:0071840,GO:0071852,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090702,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098630,GO:0098743,GO:0098772,GO:0098791,GO:0098805,GO:0099120,GO:0110053,GO:1900034,GO:1900076,GO:1900078,GO:1902531,GO:1902533,GO:1902680,GO:1902903,GO:1902905,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.TOR signaling
EggNOG OGsKOG0315@1,KOG0315@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.0788567-CDS-E-fasciculatus_F_contig10852:3388..34961622927586.0788567-CDS-E-fasciculatus_F_contig10852:3388..3496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10852 3389..3496 +
1695995608.0534306-CDS-E-fasciculatus_F_contig10852:3388..34961695995608.0534306-CDS-E-fasciculatus_F_contig10852:3388..3496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10852 3389..3496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10852.691.1prot_E-fasciculatus_F_contig10852.691.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10852 3389..3496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10852.691.1

>prot_E-fasciculatus_F_contig10852.691.1 ID=prot_E-fasciculatus_F_contig10852.691.1|Name=mRNA_E-fasciculatus_F_contig10852.691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=36bp
MNEVILATAGYDHKIHFWEPPSGECRSTLRFSDSQV
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mRNA from alignment at E-fasciculatus_F_contig10852:3389..3496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10852.691.1 ID=mRNA_E-fasciculatus_F_contig10852.691.1|Name=mRNA_E-fasciculatus_F_contig10852.691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10852:3389..3496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGAGGTGATACTAGCGACAGCTGGATACGACCACAAGATTCACTT
CTGGGAGCCTCCTTCGGGAGAGTGCCGTAGCACTCTGCGGTTCAGCGACA
GCCAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10852:3389..3496+

>mRNA_E-fasciculatus_F_contig10852.691.1 ID=mRNA_E-fasciculatus_F_contig10852.691.1|Name=mRNA_E-fasciculatus_F_contig10852.691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10852:3389..3496+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGAGGTGATACTAGCGACAGCTGGATACGACCACAAGATTCACTT
CTGGGAGCCTCCTTCGGGAGAGTGCCGTAGCACTCTGCGGTTCAGCGACA
GCCAGGTAATGAACGAGGTGATACTAGCGACAGCTGGATACGACCACAAG
ATTCACTTCTGGGAGCCTCCTTCGGGAGAGTGCCGTAGCACTCTGCGGTT
CAGCGACAGCCAGGTA
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