mRNA_E-fasciculatus_F_contig10058.69.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	6
Model size	1482
Cds size	1017
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig10058.69.1	prot_E-fasciculatus_F_contig10058.69.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig10058 406..4877 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927507.3955061-UTR-E-fasciculatus_F_contig10058:44..405	1622927507.3955061-UTR-E-fasciculatus_F_contig10058:44..405	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig10058 45..405 -
1695995569.2365925-UTR-E-fasciculatus_F_contig10058:44..405	1695995569.2365925-UTR-E-fasciculatus_F_contig10058:44..405	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig10058 45..405 -
1622927507.4978154-UTR-E-fasciculatus_F_contig10058:4877..4981	1622927507.4978154-UTR-E-fasciculatus_F_contig10058:4877..4981	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig10058 4878..4981 -
1695995569.3155065-UTR-E-fasciculatus_F_contig10058:4877..4981	1695995569.3155065-UTR-E-fasciculatus_F_contig10058:4877..4981	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig10058 4878..4981 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927507.4122732-CDS-E-fasciculatus_F_contig10058:405..573	1622927507.4122732-CDS-E-fasciculatus_F_contig10058:405..573	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 406..573 -
1695995569.2460208-CDS-E-fasciculatus_F_contig10058:405..573	1695995569.2460208-CDS-E-fasciculatus_F_contig10058:405..573	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 406..573 -
1622927507.4234302-CDS-E-fasciculatus_F_contig10058:1159..1260	1622927507.4234302-CDS-E-fasciculatus_F_contig10058:1159..1260	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 1160..1260 -
1695995569.2585425-CDS-E-fasciculatus_F_contig10058:1159..1260	1695995569.2585425-CDS-E-fasciculatus_F_contig10058:1159..1260	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 1160..1260 -
1622927507.4370506-CDS-E-fasciculatus_F_contig10058:2901..2984	1622927507.4370506-CDS-E-fasciculatus_F_contig10058:2901..2984	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 2902..2984 -
1695995569.27291-CDS-E-fasciculatus_F_contig10058:2901..2984	1695995569.27291-CDS-E-fasciculatus_F_contig10058:2901..2984	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 2902..2984 -
1622927507.4607515-CDS-E-fasciculatus_F_contig10058:3312..3359	1622927507.4607515-CDS-E-fasciculatus_F_contig10058:3312..3359	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 3313..3359 -
1695995569.2893367-CDS-E-fasciculatus_F_contig10058:3312..3359	1695995569.2893367-CDS-E-fasciculatus_F_contig10058:3312..3359	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 3313..3359 -
1622927507.474995-CDS-E-fasciculatus_F_contig10058:3698..3824	1622927507.474995-CDS-E-fasciculatus_F_contig10058:3698..3824	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 3699..3824 -
1695995569.2981396-CDS-E-fasciculatus_F_contig10058:3698..3824	1695995569.2981396-CDS-E-fasciculatus_F_contig10058:3698..3824	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 3699..3824 -
1622927507.4865346-CDS-E-fasciculatus_F_contig10058:4385..4877	1622927507.4865346-CDS-E-fasciculatus_F_contig10058:4385..4877	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 4386..4877 -
1695995569.3064167-CDS-E-fasciculatus_F_contig10058:4385..4877	1695995569.3064167-CDS-E-fasciculatus_F_contig10058:4385..4877	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig10058 4386..4877 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig10058:45..4981-
coding sequence from alignment at E-fasciculatus_F_contig10058:45..4981-

protein sequence of mRNA_E-fasciculatus_F_contig10058.69.1

>prot_E-fasciculatus_F_contig10058.69.1 ID=prot_E-fasciculatus_F_contig10058.69.1|Name=mRNA_E-fasciculatus_F_contig10058.69.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=339bp
MALYKSIQQQFESKRWWANSCGAMALLLLPGSVCQHVYFRVVVIAFYPGY
CTLLGSPLILGIAGMTLHHAYSYLETQDAVQHQENVADHSLKKMLIQNSP
FVQPCFYFDGLGQHYYMYGEYAEYSRLLGMDGRLLNPEGYADYVSGRGFC
IGQMGSKGREVSLQDLLGPGSIQSKLAALCSTFHGPGWLSYCILGARRWL
GQLLPLVGDLLLPPTGKHGSLNALPVWFIGAMAASVSADHVTPRDSATSG
VANGEATASYCHHKWGCFEFTLAVFTVGVVLFGVCCRSSLRACAQRVRQR
ARASSDIGAVLPTRAAPDARSMFFCGMSFWGIVVHGER*

mRNA from alignment at E-fasciculatus_F_contig10058:45..4981-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig10058.69.1 ID=mRNA_E-fasciculatus_F_contig10058.69.1|Name=mRNA_E-fasciculatus_F_contig10058.69.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4937bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10058:45..4981- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACCAATTGCGGTGCTCTTCGCGACCTGGTAAGCCAATTTGCCATTTT
TCGTCCTCTGCTTCAGCGCCGTTCGAGAACAGAGTTGGTGGCCTGAGGTT
TGGGATGGCTCTCTACAAAAGCATCCAGCAACAGTTTGAAAGCAAGCGGT
GGTGGGCAAACTCTTGTGGAGCTATGGCATTGTTGTTGTTACCAGGTTCG
GTTTGCCAGCATGTTTATTTTCGTGTAGTGGTGATCGCCTTCTACCCCGG
CTACTGCACACTTCTGGGGTCTCCTTTGATTCTTGGCATCGCGGGCATGA
CCCTTCATCATGCCTACTCCTATCTGGAGACGCAGGATGCCGTTCAGCAC
CAAGAGAATGTCGCGGACCACTCCCTCAAGAAGATGCTCATACAAAATAG
TCCTTTCGTTCAACCCTGCTTCTACTTTGACGGATTGGGGCAGCACTACT
ACATGTATGGCGAGTATGCCGAGTACTCGCGGCTGCTCGGCATGGACGGC
CGGCTTTTGAACCCAGAGGGATATGCCGACTACGTGAGTGGGCGGGGCTT
CTGCATTGGCCAAATGGGAAGCAAGGGGCGCGAAGTCAGCCTCCAGGTGC
ATTGTGGGATCGTGTAATAGTAGTGCCCATCGTGTGATGCAGACCTAGTT
TGGTTGGAGTGAGGTCTGTGGTCAACCGGGTTTCGGTGCCACCAACATTG
GCGCGCAATGGCATCACATGGTAGAAGCCGATGCTTGCCGCCCGGCGGCG
CTGAGGCAACTATTTCATCGCTCTACGTCTAGCGCGTATGGCTGATGGTT
GGCCGATTGTAACTGGTGTGATTGTTTTGACTGGCTCTGTTCGCGACTGC
AGGGTTCGTTGGTCGTGGTAGCTATTTTCGATGGACAGAGGCGGTCGTTG
TTGAGATGAGAGCAGGCAGAGAGCTACCACGAGAGCAACGGCAGCTAAAA
CGTGTCCACCCGTGTAAGCTCTGTCGCCGTCTGTGTGTTGTCGAAAGGAT
TGGGCGATATTGGCTATCCCGTGCCATTCGTTGCAACTAAATGTTAATGT
TTCCGGATATTGATGACCGCATGCCACTTCCCTCGTTGCTGCTTTGAATG
GGCGTGAGTGAGTACTTGTTTCCTCTGTATGCGTGTGCATGTGTTGTTCC
ATTCCAGGATTTACTGGGCCCCGGAAGCATCCAATCTAAGCTGGCTGCAC
TCTGCTCGACGTTCCACGGGCCGGGCTGGCTGTCCTACTGCATCCTCGGT
GCAAGGCGGTGGCTCGGACAGCTTTTGCCTCTGGTGTGTTAGCGATCGTT
ATGTACCGGCGGGTTTCCACGAGATCTGCACACCTGTTCTTTTTTCTTTT
TTTTTTCTTCTTTTTTTCCTTCTTCCCTCCCAAATCATGTTGAAGGAATG
TTCGACTTTGCCTCCTCCCGACGGCCCCCACGCGATACTTCTGCAGGGCC
GGTTGCTTTCTTCAAGTGTCCCAAGAACAAAAGCATGCCTTCACGTGTCG
ACCTTCCAAGATTTGACGAGTGCTGCTTCAGTAAAAACATTTTGTTGATT
CTTTTGGGCCGTTGGAACCAACACCCTTACGAACTACGCCCCTCACACGT
GAACGCCTCGATCCACACGCAGGTGGGCGACCTGCTGCTGCCACCCACCG
GCAAGCACGGCTCGCTCAAGTAAGTCCAGGTTGGAATTATTCTCGTTTGG
AATTTTTTATCGCGACGGGGGAGGCGGCTGTGATTTGTGAACCTACTGTA
GGTTATCCATGTGAATAATTCTATTCTTTCCAACGAGATACCGAAACACG
GCGCCCTCGGAGTTGGAGGTGTGGTATTGAGTTATGCTGGGCGATCCCAG
TTTCCTCTTGGGCCTCCGACCTCGGTGCTTTCGGTTGCAGCTTTGTGCTT
TACGGTGCACGCGTGCTGTGTTGCCATACTCCCGTATGACCCGCTCACTC
ATTTTCTCGTCTTTCAACTATTGGGGATGATGTATCTGTATCGTCAGCGC
GCTACCGGTGTGGTTCATTGGCGCCATGGCCGCCTCGGTGTCCGCCGATC
ATGTGACCCCCCGAGACTCCGCTACAAGCGGTAAGTGGAAATTGCGGAAG
AAGAGTGTACACTATCGGTGTTGAGTAAGCTGGTGGTTACACCTGGTCGT
GCAAATAGAGTGCTATGAATCTTAGCGTGCGATGTGGACACGATATACAA
CTCTAGACAACACCCCAGCAATGTATTCATGTGAGCCCTTCCTTTCTGCT
CAATGTTTTGGCCCAACGCCTGTTTGCAAGGAACAAGCTTTGAGTGAACA
CAAGAAACTGGCTACAATTCGTAGGGGGCAAGGTCCACGAGCACACGCAC
AAACCACGGATACAGGCCATGAGCTGCGCCCCACTGGAATGCAGGGGCCT
TTTCACAGTGACGCAACATAGTTATGACTAGTCGAGAGAAGGATCTTTCA
GGAATACCAGTGAAGGTTCCTTTGACGGTAAGCGACCCGCTGTGGGGTGG
AATCTTGAGCACTCTACGATAACATACTTGATATAGGGTCGTCGCACGAT
CTTCTTTTAGAGCCTTGAAATCAGTCTCACCATGTGCGCCGCATTACGTC
AAGTTCGGGTGACATTTGCTCTGTTTTCAAGAGCGTTTGGCCCAATGTAT
TATGTATCAAAGTTGGTTTGGGCCATGCTCGAGATCGAACGCTTTTCCCT
TACGGACGACGACTGCAGTAGTCTACGCCAATCTTCGATCGTGTCACACC
GGGGCCTCGTTTGTCGCTCTTGCGTTGGGCGGCCTGACAACCCCCCTAAC
AAAACAAAAGTCCCATTCTTTTGTCGAGTTTTCCCCCTCTGTGCGTTGAA
GTGACAGATAGCCGCCTTGCTTGACTATTCCCGTGTCCACCCCATGTTGG
TTGAATCCGTGGACTAGGAGGCAACCTTGCAACGTTCTGACGTTTGGGGC
GTGGGTGTGAAACTCGACGCACCCACACGTCGAGCGGGTAGTTGTCTCAA
GAGTAATATTTTTCCAAGAAAATGTGCCTGTTTCGTGTGTACGGAACCCC
TTTTTTCCGCTTTCACAGTCGACGAAGGAAAAGGGTGGCGGACTCCTTTT
CACCATCAATATTTGACCGTTCAGGGTGTGACCACCACATGAGGAAGGTT
GAATATAAACACAGCTCCCGTGAGGAGGTGCGGGAAAGGCAACGAAAGGT
GGAACGACCGACCCCCAGTAAACCTGGGCCACCCGATCTTATCGCTGACA
GCTCGCGCAAAGAAAATTTATTTGCGCTCTGTGTGTGTTTGCCGCACGCG
CTAAACCAACACACACTCACGATATTTCGACAGACACCGCACACGTCCGC
GAAATTTCACCCCCGTGCGACCGTACGACTGCCTTCACTGGAAACATAAA
TACCTCTGCCGTACAGAGGTCCAAAGGTGCTGCTGCCGATCTCAAAACCA
CCAGCAAGATGATACGTAGTTCAGAGTCAGATCCACAAGTCTACCCTGCT
CGGGATCCCTGCTAACTGGTAACAGGGTGTTTTGTGCGAGAGTCAGCACG
AATACTGGCAAAGTCGATGAAGGGACGGACTACATTGATTTCAACGCGGC
GTTTACTCAGATACGGAAGTTCGGGTGAATGGGGGAATGGCGCTTTTGTG
TTCTGAACATGGCCATAGGGGCGAAATAATGTAAGGCCTGACGTTACTGC
TGTTTGCCGTCCGCCACGCAGGTGTCGCCAATGGCGAAGCCACCGCGTCC
TACTGCCACCACAAGTGGGGCTGCTTCGAATTCACCCTTGCGGTGTTCAC
CGTGGGCGTCGTATTGTTTGGGGTGAGTCAAAGAGTCATGTCATACAACA
TCGGTCACAGCCACGTGTGCAAACTTCGCAGTATTGTGCCGCGGTCGAGT
GAATTCGTCCTGTTCTGCAGAGTTCTGGCTGAGATGACCGTATTGAAGCA
TTGTCTACGCCAATATTGTCTACACCAACCTTGCCCCGAATATTGGGCGT
GTCTTGAGTTTCTTTCCTGAGCGCCGCGTTGTGGCGTTCGCAGGTCCAAT
GTGTAAGTTGGACTGAGGGTTTTCCGAGTTCCACAGCCTGCAAGCTGGAA
TCGGAGACACTCTCACCATGAGACCTTGAGCACCAGTCTCGAACCCTGGA
AAGCCGCAACATGCTTTGGCGGCGACACGATTTCGCATTTTTGAGTAAGC
GTCTGATACACGTCAGTCAGGTCTGTCAGTCGCAACATGGACGGAAAACA
CCGACCGAAGTTTCATTGAGAGCTCGACCTTGTTACACTTGTTTTTATTA
GTCGAAAACGTGTGTAGAAGAAAGTCCCTACAACAGCAGCGTCCTCATGT
GGGCTTTATTATTGTATTCTACAACCTGATCATTATTTCTGACCAACACG
AAACACAGGTGTGCTGCCGCAGCTCCCTCCGCGCGTGCGCCCAGCGAGTC
CGTCAGCGGGCTCGTGCCAGCAGCGACATCGGAGCCGTCTTGCCCACCAG
GGCTGCTCCTGACGCTAGGTCCATGTTCTTCTGCGGCATGTCCTTCTGGG
GCATTGTTGTTCATGGGGAGCGGTGATGTCCCCGAAAACATCGGGACCCT
ACACTTCTGATAGGGTCTCGCTAGGATGGAAGCGGGACACGCTCTGGCTC
ATTTTTGGCCGGTCACAATGTGGCGCAAACATCATCCTTCCGGGCATCGT
ACCTACATAGGGGGTACACATCTGCGAAGAATACCGGTGCCCGATAGTGA
AATACAATAGTAAATGCCGGACCGACGGTAGTAAGGGATGGTTGAGAGCA
CATGACACGGCGTAGCTCTTCATCGTGTGTAGCCAATCATTCGTGCGTTT
TGTGCTCATATCCCACAGTGCGGCCCGAAAGAAAGAGTTGTCCATGAGGT
CGAGGCCCAATCTCCCTAGCTCACGTTTGGACGATGG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10058:45..4981-

>mRNA_E-fasciculatus_F_contig10058.69.1 ID=mRNA_E-fasciculatus_F_contig10058.69.1|Name=mRNA_E-fasciculatus_F_contig10058.69.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10058:45..4981- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTCTCTACAAAAGCATCCAGCAACAGTTTGAAAGCAAGCGGTGGTG
GGCAAACTCTTGTGGAGCTATGGCATTGTTGTTGTTACCAGGTTCGGTTT
GCCAGCATGTTTATTTTCGTGTAGTGGTGATCGCCTTCTACCCCGGCTAC
TGCACACTTCTGGGGTCTCCTTTGATTCTTGGCATCGCGGGCATGACCCT
TCATCATGCCTACTCCTATCTGGAGACGCAGGATGCCGTTCAGCACCAAG
AGAATGTCGCGGACCACTCCCTCAAGAAGATGCTCATACAAAATAGTCCT
TTCGTTCAACCCTGCTTCTACTTTGACGGATTGGGGCAGCACTACTACAT
GTATGGCGAGTATGCCGAGTACTCGCGGCTGCTCGGCATGGACGGCCGGC
TTTTGAACCCAGAGGGATATGCCGACTACGTGAGTGGGCGGGGCTTCTGC
ATTGGCCAAATGGGAAGCAAGGGGCGCGAAGTCAGCCTCCAGATGGCTCT
CTACAAAAGCATCCAGCAACAGTTTGAAAGCAAGCGGTGGTGGGCAAACT
CTTGTGGAGCTATGGCATTGTTGTTGTTACCAGGTTCGGTTTGCCAGCAT
GTTTATTTTCGTGTAGTGGTGATCGCCTTCTACCCCGGCTACTGCACACT
TCTGGGGTCTCCTTTGATTCTTGGCATCGCGGGCATGACCCTTCATCATG
CCTACTCCTATCTGGAGACGCAGGATGCCGTTCAGCACCAAGAGAATGTC
GCGGACCACTCCCTCAAGAAGATGCTCATACAAAATAGTCCTTTCGTTCA
ACCCTGCTTCTACTTTGACGGATTGGGGCAGCACTACTACATGTATGGCG
AGTATGCCGAGTACTCGCGGCTGCTCGGCATGGACGGCCGGCTTTTGAAC
CCAGAGGGATATGCCGACTACGTGAGTGGGCGGGGCTTCTGCATTGGCCA
AATGGGAAGCAAGGGGCGCGAAGTCAGCCTCCAGGATTTACTGGGCCCCG
GAAGCATCCAATCTAAGCTGGCTGCACTCTGCTCGACGTTCCACGGGCCG
GGCTGGCTGTCCTACTGCATCCTCGGTGCAAGGCGGTGGCTCGGACAGCT
TTTGCCTCTGGATTTACTGGGCCCCGGAAGCATCCAATCTAAGCTGGCTG
CACTCTGCTCGACGTTCCACGGGCCGGGCTGGCTGTCCTACTGCATCCTC
GGTGCAAGGCGGTGGCTCGGACAGCTTTTGCCTCTGGTGGGCGACCTGCT
GCTGCCACCCACCGGCAAGCACGGCTCGCTCAAGTGGGCGACCTGCTGCT
GCCACCCACCGGCAAGCACGGCTCGCTCAACGCGCTACCGGTGTGGTTCA
TTGGCGCCATGGCCGCCTCGGTGTCCGCCGATCATGTGACCCCCCGAGAC
TCCGCTACAAGCGCGCGCTACCGGTGTGGTTCATTGGCGCCATGGCCGCC
TCGGTGTCCGCCGATCATGTGACCCCCCGAGACTCCGCTACAAGCGGTGT
CGCCAATGGCGAAGCCACCGCGTCCTACTGCCACCACAAGTGGGGCTGCT
TCGAATTCACCCTTGCGGTGTTCACCGTGGGCGTCGTATTGTTTGGGGTG
TCGCCAATGGCGAAGCCACCGCGTCCTACTGCCACCACAAGTGGGGCTGC
TTCGAATTCACCCTTGCGGTGTTCACCGTGGGCGTCGTATTGTTTGGGGT
GTGCTGCCGCAGCTCCCTCCGCGCGTGCGCCCAGCGAGTCCGTCAGCGGG
CTCGTGCCAGCAGCGACATCGGAGCCGTCTTGCCCACCAGGGCTGCTCCT
GACGCTAGGTCCATGTTCTTCTGCGGCATGTCCTTCTGGGGCATTGTTGT
TCATGGGGAGCGGTGAGTGTGCTGCCGCAGCTCCCTCCGCGCGTGCGCCC
AGCGAGTCCGTCAGCGGGCTCGTGCCAGCAGCGACATCGGAGCCGTCTTG
CCCACCAGGGCTGCTCCTGACGCTAGGTCCATGTTCTTCTGCGGCATGTC
CTTCTGGGGCATTGTTGTTCATGGGGAGCGGTGA

mRNA_E-fasciculatus_F_contig10058.69.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

ZOOM

x 1

POSITION

0