mRNA_E-fasciculatus_F_contig10053.67.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10053.67.1
Unique NamemRNA_E-fasciculatus_F_contig10053.67.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10053.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10053contigE-fasciculatus_F_contig10053:4051..4303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size244
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10053.67.1prot_E-fasciculatus_F_contig10053.67.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10053 4051..4219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.2440066-CDS-E-fasciculatus_F_contig10053:4050..41531622927507.2440066-CDS-E-fasciculatus_F_contig10053:4050..4153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 4051..4153 +
1695995569.1607249-CDS-E-fasciculatus_F_contig10053:4050..41531695995569.1607249-CDS-E-fasciculatus_F_contig10053:4050..4153Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 4051..4153 +
1622927507.2603736-CDS-E-fasciculatus_F_contig10053:4163..42191622927507.2603736-CDS-E-fasciculatus_F_contig10053:4163..4219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 4164..4219 +
1695995569.1685884-CDS-E-fasciculatus_F_contig10053:4163..42191695995569.1685884-CDS-E-fasciculatus_F_contig10053:4163..4219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10053 4164..4219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.2779438-UTR-E-fasciculatus_F_contig10053:4219..43031622927507.2779438-UTR-E-fasciculatus_F_contig10053:4219..4303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 4220..4303 +
1695995569.1769283-UTR-E-fasciculatus_F_contig10053:4219..43031695995569.1769283-UTR-E-fasciculatus_F_contig10053:4219..4303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10053 4220..4303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10053.67.1

>prot_E-fasciculatus_F_contig10053.67.1 ID=prot_E-fasciculatus_F_contig10053.67.1|Name=mRNA_E-fasciculatus_F_contig10053.67.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=53bp
SFQTVAGHGWAKEVVTGAQPPHNLPRVRLCADVCIVSPRITDCSIGPINR
AD*
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mRNA from alignment at E-fasciculatus_F_contig10053:4051..4303+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10053.67.1 ID=mRNA_E-fasciculatus_F_contig10053.67.1|Name=mRNA_E-fasciculatus_F_contig10053.67.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=253bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:4051..4303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTTTCAAACTGTAGCAGGGCACGGGTGGGCAAAGGAGGTTGTGACTGG
TGCCCAACCTCCCCATAACCTCCCGAGAGTCAGGTTGTGCGCCGACGTAT
GCAGCTACAGCAGTAGTCTCGCCCCGCATCACGGACTGCAGTATTGGTCC
AATCAATAGGGCGGACTGAAGCAAGCGTAGACTAAATGTTGTCCAAGTTC
GATCCCCAACGTCCCAACCTCACGCCCGGGGAGATTGGGCACCAGTTACA
ACC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10053:4051..4303+

>mRNA_E-fasciculatus_F_contig10053.67.1 ID=mRNA_E-fasciculatus_F_contig10053.67.1|Name=mRNA_E-fasciculatus_F_contig10053.67.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:4051..4303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCTTTCAAACTGTAGCAGGGCACGGGTGGGCAAAGGAGGTTGTGACTGG
TGCCCAACCTCCCCATAACCTCCCGAGAGTCAGGTTGTGCGCCGACGTAT
GCAAGCTTTCAAACTGTAGCAGGGCACGGGTGGGCAAAGGAGGTTGTGAC
TGGTGCCCAACCTCCCCATAACCTCCCGAGAGTCAGGTTGTGCGCCGACG
TATGCATAGTCTCGCCCCGCATCACGGACTGCAGTATTGGTCCAATCAAT
AGGGCGGACTGATAGTCTCGCCCCGCATCACGGACTGCAGTATTGGTCCA
ATCAATAGGGCGGACTGA
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