mRNA_E-fasciculatus_F_contig1081.653.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1081.653.1
Unique NamemRNA_E-fasciculatus_F_contig1081.653.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1081.653.1 vs. uniprot
Match: D8LDZ7_ECTSI (Serine/threonine-protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDZ7_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.540e-80
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 MEKEEPTLSRRDTHGPFARMGLGSKTSSKASMGAAGAGAEENERLHCVITEKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGGHMGRTASMATATALSSLQPGRKHDEMAQRVIRMFK 405
            MEKEEPTLSRRDTHGPFARMGLGSKTSSKASMG  GAGAEENERLHCVITEKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGGHMGRTASMATATALSSLQPGRKHDEMAQRVIRMFK
Sbjct:    1 MEKEEPTLSRRDTHGPFARMGLGSKTSSKASMG--GAGAEENERLHCVITEKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGGHMGRTASMATATALSSLQPGRKHDEMAQRVIRMFK 133
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BLAST of mRNA_E-fasciculatus_F_contig1081.653.1 vs. uniprot
Match: D8LDZ8_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.580e-26
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:  124 NERLHCVI---TEKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGGHMGRTASMATATALSSLQPGRKHDEMAQRVIRMF 402
            NER+  +I   +E+DAAI+AL++EV+RL+ EL   T+V KREHPLEP+IHLVD++G G  G HMGRTAS+ATATAL  L P RK DE AQ+++ MF
Sbjct:   22 NERVEVLIGLISERDAAISALEYEVRRLTIELQKQTKVVKREHPLEPLIHLVDDKGVGGRGSHMGRTASVATATALRGLGPSRKGDETAQKMLAMF 117
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BLAST of mRNA_E-fasciculatus_F_contig1081.653.1 vs. uniprot
Match: A0A6V1NP81_HETAK (Serine/threonine-protein phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NP81_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 8.100e-20
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  130 RLHCVITEKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGGHMGRTASMATATALSSLQPGRKHDEMAQRVIRMFKA 408
            RLH ++ EKDAAI ALQ E+ R+SNE+ S T +A+R+HP+ PVIH+V+E GS      MGR AS+AT+  L ++ P +K+DE+  R+I MFKA
Sbjct:    9 RLHAMLAEKDAAIAALQQEIHRISNEVQSKTGIARRDHPMTPVIHVVEEGGSTVQN-RMGRHASVATSNVLQNI-PSKKNDELTPRMISMFKA 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1081.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDZ7_ECTSI1.540e-8098.52Serine/threonine-protein phosphatase n=2 Tax=Ectoc... [more]
D8LDZ8_ECTSI1.580e-2660.42Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6V1NP81_HETAK8.100e-2052.69Serine/threonine-protein phosphatase n=1 Tax=Heter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1081contigE-fasciculatus_F_contig1081:16026..18029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue2.4e-66
Seed eggNOG ortholog2880.D8LDZ7
KEGG koko:K01090
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size409
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1081.653.1prot_E-fasciculatus_F_contig1081.653.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1081 16026..18029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927582.6545844-CDS-E-fasciculatus_F_contig1081:16025..160811622927582.6545844-CDS-E-fasciculatus_F_contig1081:16025..16081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 16026..16081 +
1695995606.343054-CDS-E-fasciculatus_F_contig1081:16025..160811695995606.343054-CDS-E-fasciculatus_F_contig1081:16025..16081Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 16026..16081 +
1622927582.670485-CDS-E-fasciculatus_F_contig1081:17212..173361622927582.670485-CDS-E-fasciculatus_F_contig1081:17212..17336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 17213..17336 +
1695995606.3600092-CDS-E-fasciculatus_F_contig1081:17212..173361695995606.3600092-CDS-E-fasciculatus_F_contig1081:17212..17336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 17213..17336 +
1622927582.683093-CDS-E-fasciculatus_F_contig1081:17801..180291622927582.683093-CDS-E-fasciculatus_F_contig1081:17801..18029Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 17802..18029 +
1695995606.3701115-CDS-E-fasciculatus_F_contig1081:17801..180291695995606.3701115-CDS-E-fasciculatus_F_contig1081:17801..18029Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1081 17802..18029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1081.653.1

>prot_E-fasciculatus_F_contig1081.653.1 ID=prot_E-fasciculatus_F_contig1081.653.1|Name=mRNA_E-fasciculatus_F_contig1081.653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
MEKEEPTLSRRDTHGPFARMGLGSKTSSKASMGAAGAGAEENERLHCVIT
EKDAAITALQFEVQRLSNELASHTRVAKREHPLEPVIHLVDEQGSGRPGG
HMGRTASMATATALSSLQPGRKHDEMAQRVIRMFKA
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mRNA from alignment at E-fasciculatus_F_contig1081:16026..18029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1081.653.1 ID=mRNA_E-fasciculatus_F_contig1081.653.1|Name=mRNA_E-fasciculatus_F_contig1081.653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2004bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1081:16026..18029+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGAAGGAGGAGCCAACGCTGAGTCGCCGAGACACGCATGGGCCGTT
CGCGAGGTGAGGGTTTGCGCCTGCCGCACTCGTTCTGGGGAGCAGCAGTG
GCGGAGCTGGCTGAACCCCATGGAACCGACGATAGCAGTCGGCCGTTAGG
ACTGACTGATCTACGGACGGCACACGCCTTTTGAGAGGGCTCTCGCTGGT
AGCGCCTCTGTGATTGCTAGCGGCGAGGATTCGGGATAATCTGGCAGCGC
GGTGCTAGTCAACAGGGGTTTTGTGTGCCGCCCGTATGCAATTGGTTGGT
AGAAGTTGGCTGTTCCTTTCACACGACGTTGAGATCGTTCAAAAGCGCTG
CACAGAAGCAGTCACTTCCACTGCTGTTCCACGAGGTTCCCCCCGTCCCA
CCTGGCGCCAAAGCTTCTCTCCTTTTGCTGATCCGCAGCGAGGAAACCAA
CCGAAGGGAGAATGTAGAGGTTTGACATTAGGTCCCGTTGGTGTGATTCG
TATCAATCAACCCTCAACTTTCCCAACTGCCATTTCCCGTAAGTGTTCTT
TCGGAAGTTACGCAACCCTGGTCGTAAGCGCTGTACCAGCATGCAGCTGT
GGGTGCGCGGCAAGCCGAGTTTCTTGCCCGCTACCCCTGCCGTGCCCCTG
TGAAGTGCGGTCTTTCCCCGCAAACCTCCAAATGGTGGGCTGGTGTGTAT
GAATTTCGAATTTACTTCAAACGTTGTGCTCGCTGTCACCTGTCTTCCTA
GCGCCATATATCGGCGGCAATTTGGACCTGCCTTGCAAGTCACAACAGGC
CGCCCGACGACGCTATTGGCGGCTGCGGTGTATTCTGACCGCCGGTCGCA
CATCCTAGGAAGGACGAAGACGGTTCAATGGGGGAACTGCTCTTGTATAC
CGGCACATGAAAAGCATTTGAGAAGCCAGTTCCATATTCTCTCTTGTCTG
GAATGTAAGCCTCGCTCCTTCGTTTGAATTTCTACGCTTGGTGGACTCGC
TGCGGGGGTTGATAACGAGCTCTACTTGTAGACAAGTGTAGCCATGACGG
GGCTGTGTCTGTGTCCTGCGCGTATGTATCGCTTCCCACGATCAATATCC
TCATGAGCAACTGAAGAGCTTCCAATGTTGTGTTGTTGTTACCCTCCTGT
GGAGTATTTTCTAATCAACCACGCTATCGACGCGCAGGATGGGGTTGGGT
AGCAAGACATCGAGCAAGGCGTCAATGGGGGCGGCGGGGGCGGGGGCGGA
GGAGAACGAGCGGCTGCACTGCGTCATCACCGAGAAGGACGCCGCGATCA
CGGCATTGCAGGTGTGTCTCTCAACCCTTGCCCGCTGGCTGGAGCACCTT
GAGCTATCCTGAAACGAAAGGGAAGGGCGGATACGCATGGATGAGGATTG
GGGTACAGGGGTATTCAAAAGCGTTCAAAAGCGTCTTCGCCGTGTGTGGT
ACTCAGGAGTTTTAGTTCAGCGTGCTCCTCTGTCAACACCCAAGTGGCTG
GTGAAGTATGCGATGAATCACCTGTCCCCGCGTGCGCCGTCTTTGTTGTT
AGTATCATCCCGTGCAACACCCGCCGCTCACTGTTTCTTTCCCCCCGGAC
CGTTCCCCCCCTACCCATAAAATTTACTCGCACGTTCAACTCAAGAGCTC
TGGCACCAAGCCAAGCGGAAGCATCCAGTAGTACCTGGTATGGCTCAACG
CCCTTCTATCACGTTACTTCAACATAATCACCACAACGACCCCCCCCCCC
CCCCCCCCCCCCCCCCAACGCAACAGTTCGAAGTCCAGCGGCTGAGCAAC
GAGCTGGCGTCGCACACCCGAGTCGCGAAGCGCGAGCACCCGCTGGAGCC
GGTGATCCACCTGGTCGACGAGCAAGGGTCCGGCAGGCCCGGCGGGCACA
TGGGGAGGACGGCTAGCATGGCCACGGCCACGGCGCTGAGCAGCCTCCAG
CCGGGCAGGAAGCACGACGAGATGGCGCAGCGGGTCATCCGCATGTTCAA
GGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1081:16026..18029+

>mRNA_E-fasciculatus_F_contig1081.653.1 ID=mRNA_E-fasciculatus_F_contig1081.653.1|Name=mRNA_E-fasciculatus_F_contig1081.653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1081:16026..18029+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGAAGGAGGAGCCAACGCTGAGTCGCCGAGACACGCATGGGCCGTT
CGCGAGATGGAGAAGGAGGAGCCAACGCTGAGTCGCCGAGACACGCATGG
GCCGTTCGCGAGGATGGGGTTGGGTAGCAAGACATCGAGCAAGGCGTCAA
TGGGGGCGGCGGGGGCGGGGGCGGAGGAGAACGAGCGGCTGCACTGCGTC
ATCACCGAGAAGGACGCCGCGATCACGGCATTGCAGGATGGGGTTGGGTA
GCAAGACATCGAGCAAGGCGTCAATGGGGGCGGCGGGGGCGGGGGCGGAG
GAGAACGAGCGGCTGCACTGCGTCATCACCGAGAAGGACGCCGCGATCAC
GGCATTGCAGTTCGAAGTCCAGCGGCTGAGCAACGAGCTGGCGTCGCACA
CCCGAGTCGCGAAGCGCGAGCACCCGCTGGAGCCGGTGATCCACCTGGTC
GACGAGCAAGGGTCCGGCAGGCCCGGCGGGCACATGGGGAGGACGGCTAG
CATGGCCACGGCCACGGCGCTGAGCAGCCTCCAGCCGGGCAGGAAGCACG
ACGAGATGGCGCAGCGGGTCATCCGCATGTTCAAGGCATTCGAAGTCCAG
CGGCTGAGCAACGAGCTGGCGTCGCACACCCGAGTCGCGAAGCGCGAGCA
CCCGCTGGAGCCGGTGATCCACCTGGTCGACGAGCAAGGGTCCGGCAGGC
CCGGCGGGCACATGGGGAGGACGGCTAGCATGGCCACGGCCACGGCGCTG
AGCAGCCTCCAGCCGGGCAGGAAGCACGACGAGATGGCGCAGCGGGTCAT
CCGCATGTTCAAGGCA
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