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Homology
BLAST of mRNA_E-fasciculatus_F_contig10052.65.1 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI) HSP 1 Score: 386 bits (991), Expect = 8.670e-119 Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 2 Query: 2 QAFTRHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAERWSDEHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIEENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMDKGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDVEG 622
QAFTRHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREA RWSD+HILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAI ENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERM+KGELPPLAEVEEILAF+EKIGVDQVALDGGFVAPD EG
Sbjct: 510 QAFTRHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAARWSDKHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFLEKIGVDQVALDGGFVAPDFEG 716
BLAST of mRNA_E-fasciculatus_F_contig10052.65.1 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE) HSP 1 Score: 350 bits (897), Expect = 2.090e-105 Identity = 184/189 (97.35%), Postives = 187/189 (98.94%), Query Frame = 2 Query: 56 SIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAERWSDEHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIEENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMDKGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDVEG 622
SIGGTLAVWG+SKEGNAMKTTGRLQTLLTREQLREAERWS EHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAI ENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERM+KGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDV+G
Sbjct: 498 SIGGTLAVWGDSKEGNAMKTTGRLQTLLTREQLREAERWSYEHILPAVADAWETRGTAKLFLEAVEKFFVGQQQEEPLLKAIAENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMNKGELPPLAEVEEILAFIEKIGVDQVALDGGFVAPDVKG 686
BLAST of mRNA_E-fasciculatus_F_contig10052.65.1 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.750e-14 Identity = 69/242 (28.51%), Postives = 110/242 (45.45%), Query Frame = 2 Query: 2 QAFT--RHTNALVLDPRDLGSIGGTLAVWGESKEGNAMKTTGRLQTLLTREQLREAERWSDEHILPAVADAW-------------------ETRGTAKLFLEAVEKFFVGQQQEEPLLKAIEENLSEISESERRAEEKYNKFRVLAKERGSTKYKDLLPKSIATGIICKFRLLPGNKVSAIQRGVVERMDKGE---------------------LPPLAEVEEILAFIEKIGVDQVALDGGF 601
Q FT + NA VL+P+ L +GGT+ + G + GRLQ L+ + ++EAE + D ILP +A +W G L + + LL+A++ + E + K +R A ER S K+ LPK T +I +F +LPGNKV A+++ +V RM + LP LA ++++LA +E+IG++ +A +GGF
Sbjct: 403 QGFTASKSGNAAVLEPKHLSEVGGTVTQY---VGGPRLLCKGRLQALMGEDDVKEAEAFRDAKILPRIASSWMEINAXXXXXXXXXXXXXXXXSGQDWLAWARENNSLRPGAETDALLEAVQSYVGASQERQDAEATKEAFYRTRAFERESALLKECLPKGFVTAVISRFNMLPGNKVMAVEKALVIRMRQDSCQVTXXXXXXXXXXXXXTDPALPRLATIDQLLAAVERIGLETIAAEGGF 641
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 319.3 |
| Seed ortholog evalue | 1.3e-84 |
| Seed eggNOG ortholog | 2880.D8LDS4 |
| Preferred name | PUS1 |
| KEGG ko | ko:K06173,ko:K14016,ko:K20674 |
| KEGG Pathway | ko04141,ko04624,map04141,map04624 |
| KEGG Module | M00400,M00403 |
| GOs | GO:0000049,GO:0000959,GO:0000963,GO:0001522,GO:0002153,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0019219,GO:0019222,GO:0030374,GO:0031119,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070525,GO:0070900,GO:0070902,GO:0071704,GO:0080090,GO:0090304,GO:0090646,GO:0097159,GO:0106029,GO:0140053,GO:0140098,GO:0140101,GO:0140110,GO:1900864,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990481,GO:2000112,GO:2001141 |
| EggNOG free text desc. | pseudouridine synthase activity |
| EggNOG OGs | COG0101@1,KOG2553@2759 |
| EC | 5.4.99.12 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03016 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2513 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10052.65.1 >prot_E-fasciculatus_F_contig10052.65.1 ID=prot_E-fasciculatus_F_contig10052.65.1|Name=mRNA_E-fasciculatus_F_contig10052.65.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=204bp
MKTTGRLQTLLTREQLREAERWSDEHILPAVADAWETRGTAKLFLEAVEK
FFVGQQQEEPLLKAIEENLSEISESERRAEEKYNKFRVLAKERGSTKYKD
LLPKSIATGIICKFRLLPGNKVSAIQRGVVERMDKGELPPLAEVEEILAF
IEKIGVDQVALDGGFVAPDVEGGDESSGGGGGAATAKSTAAPAAAAEVAT
SAA* back to topmRNA from alignment at E-fasciculatus_F_contig10052:398..4557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10052.65.1 ID=mRNA_E-fasciculatus_F_contig10052.65.1|Name=mRNA_E-fasciculatus_F_contig10052.65.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4160bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10052:398..4557+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCAGGCCTTCACGCGACATACGAACGCCCTCGTGCTGGACCCGCGGGACC
TGGGCAGCATCGGCGGCACGCTTGCCGTGTGGGGCGAGAGCAAGGAGGGC
AACGCGATGAAGACGACCGGGCGGCTTCAGACCCTGCTCACCCGGGAGCA
GCTGAGGGAGGCCGAGCGGTGGAGCGACGAGCACATCCTCCCGGCCGTGG
CGGACGCGTGGGAGACAAGGGGCACGGGTAAGGATGGTTGGGGCCGAGTA
GCAGCCTTAGCGAGCGAGCGATGATGAGCTTTTTTTTTGTAGGGGGTATG
CGGGGATGGGGGCTAAGGTTATGCATAGGGCTACCATACCCCCCTCTCAA
AATCATTGTGTAATGGTAATATCCTCGCGGGTCCGGTGGAAATATCCTCG
CGGGTCCGCAGCGGTAGGGAGGGGGGGGACGAGGGGTAGCACTGTTTTTT
GTTGCGGGGGAGGAGGAGGGGGGGGGGGGGGGGGGTGTGTTTTTGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGCGTTGGCGGCGGTCTGCCCCGCTCTT
TGTTCAACAACCTTCGCACTTATCTCATCGCAAGAAGCTTCTTTTTCTCC
TATTATATTTACACCGCCGTGCCATCACGTGTCGGGGGGACAACAATGAA
ACTGCTGTCTACATATTTCGCAGCGAAACTGTTCCTCGAGGCCGTGGAGA
AGTTCTTCGTGGGGCAGCAGCAGGAGGAGCCGCTGCTGAAGGCCATCGAG
GAGAACCTGTCGGAGATCTCGGAGAGCGAGCGGAGGGCGGAGGAGAAGTA
CAACAAGTTCCGGGTGCTGGCTAAGGAGAGGGGTTCCACCAAGTGAGAGA
CGACGATAGGCGATATGTAGATGATGCGATCGTCGCTTGTATGCGCGAAG
GACGAAAAAGAGTGCGAGTAGTACGTGTTCGTCTAGAAGTAAACAGTAAA
TTGGTTGATGGCTGTTTGAAGAAGGCAGGCAGCACTTGCAGTCTTCTCTC
GTTTTGGTGGCAATCTCCTCTCTCTCCCCTCTCTTCTTAGTAGTGGTTTA
TTTATTCCTCTCTCTCTACCTCAGCGCCTAACCCTGACCTATCCTGTGGA
TTGCGAAAACGACACAGGTACAAGGATTTGCTGCCGAAGAGCATCGCCAC
GGGGATCATCTGCAAGTTCCGCCTGCTCCCCGGGAACAAGGTCTCCGCCA
TACAGCGAGGAGTGGTTGAGCGCATGGACAAGGTGCGGTGCAATAGACTC
TTTTGTTGTTGTTGTGACACAACAAATTCACCTCCTCCACAGCTGTTAAC
AGCCTCTTGCAACCTATCGTCGGCGATGCTCCAAAAGCAGATCATGCCGA
AGGAGTCTTTGCCTCCCCCCATTTAACCAAATTTTATATAGTTTGACATT
TGTACAAGTTGATATATTGGGGCACACGTCATGGGGAACTCTAACCTTGT
TCTTGTAGAAACAAACGTGAAAAAGAAGGCGAGACTATTGTTCCTATTTT
TTTCTCGGTGGACGGGTCGACATGGAATAGATGACGTGGGTTTCTTGCTC
TCACTACTGTTAATGTGTGTCCCCACCACTGAGCGGTCGGCTTGTGCGCG
AAGGACAACAGGCAGACGGGCGGTGGTCGGATGCGACAACTTTGGTTGGG
TTGATGCCTTGCGGATACAACAGAAGGAATCATGTTTGTTTCTTCAGGGT
TTCTATCCGTGCGTAAGACGCGTGTTCTTGGGGTAAAGGCTCATCACAAC
AACGACCTCCTCATATACCGTGGACGTGTCGGAGTTACTCCGTTTTTTGT
TTGGAAAGCCACATCTAGCTGACGATCTCAAGTGTCAAAGTTCTCTTTTC
TTTAGCCGGAAATTGTGAACGCCCAGGTTGTTAAGGTGGCGCGTTCTGCA
CGCCTCTGTGTTTAACGACGCTCGACCTGCCTGAGCCGATAACTTTCGAG
AACCGGCGGAATTCGTCATGGTGGACTTTCTTTTCTTCGTTTTGAAAACG
CCGAGAAAAAAAAACACGATGACAGAAAAAAAGGAGTTGACGCCTTGGTA
TGTGGTTTTGACGCGCCTTCCAACCCGCTCTATCGCCGCCGCCGCTGCTC
GCGCGTTCGCGCGTCGTATGTACGTTGTGCCTCATGTTTGTTTGTGTGTT
TTGTTAAGGGCGAGCTGCCGCCGCTGGCCGAGGTCGAGGAGATCCTGGCG
TTCATAGAGAAGATAGGCGTCGACCAGGTGGCCCTAGACGGGGGGTTCGT
TGCTCCTGACGTCGAAGGCGGGGACGAAAGCAGCGGCGGCGGCGGCGGTG
CTGCCACGGCAAAGAGCACTGCCGCCCCCGCGGCCGCGGCAGAGGTGGCT
ACTAGTGCTGCGTGATGATGCGCCCGCGCGCGACGAGTAGCAGACAAGAC
ACCTTTGCTGCGGCACGAAGACGAGGAAGGCACTTTTTTTTTGCGCCGGC
ACCGCTCCTGTGAGGGGTGGGTACGGTGCGAAGAGAAGACACTTTTGCGC
CGCTCCCCCCACCCCTGTCAGGCGTGAGAGTGCGGTTGGTAGCGGTTTTT
GGCGCGGGTGTGCAACGCAAGTCGTTATAGCTGTGGGCTGTGCGTCTTCG
GGAGGACGGGCGGGGACTGTTCTCTTTGCTCTTTCTCTTCAAGGATGGTC
TCGAGGTGCCTCCTTTTTTTTGTCTTGTGTAGATACCTCCTCCCTTTTTG
GTGTCGCATCCGTGTGTGACCGGCATTTTCCAGAGGACGTTCGTGACGTT
GAGGGTGCGGAGAGATGCAAACGCTTTGTTGCTGTTGCTGTGTAGACGTT
CATGGACAACAATTGTCAAAGGCCGACGATAGAGTTGAGGCAGGAGTGAG
AGCGGGGGCTGGGTTGGTTGCAGTCGGGGACGCCGCGACATGTAGTAAGT
AGTGCACCTTTCTTCCCACCCACGTTCCACCACCCTTTACGCATCCTAAC
GTGTGCCGTAAGAAACCGTTTAAACCGTTTCGGGTTGCTTGGAATTGAGT
GGTATGTCCTGGATTGCTCCCATGTCGAGACCACCGACAGCGGTATCCTG
TTTGCGGAAAAGCTTGTGCGAGCTCCGGGTGGTAGTATCTGCGGCGGCTT
GGGACGTCAGGCATCCGGCGGGCAGATGCATGCACGTTGACGTTTGTTTT
CTCTGTGAGGATAAGGGACAGGCCGTGATGCGAATCTCGAAAGAGAGCGG
GCCACTGCGGCCACATGACGAAAAGCAAACAACAAACGGGTGAGAGCCCC
ATCCCTCCGACAGAGGCTGGTGAAGGTTTTTCTTTCGACTTGCGTGCGTG
TTGGGGCATCCTCCATCAAAAGAGAGGCACGAAAAGGCGCTTGGTTTGCT
GTTCTGGCGTTGCGCTCGACCGCGGAGAGAAGAACTCGACGAAAAGCAAG
AGGACGCATGCCTCTTAATACGTGCGTGCGTGAAAAAATTATTCAACAAA
ACAAGATAAATGTACCAAAACTCGAAAGAAACAAGACACCACCAACGGAA
TTTTCAACCTACAGTACCCGCTTCCTTCCCGTGTCCACGAAAACACGCCA
CCGATGGTCCACGACGCGGTCATCAAACTGTCGAGTCCCGGAGAAAAAAA
GGACAAAATGAAAGGTAGAAACACGGAAGGAAAATTCTACCAAAAACTCC
GTCGCTACAAAACAGCTGTCCTATCCTCCGCTCATCAGCCCCAGGACGTG
CGCCGCGGCTCCCACTACCATCGGCCGCAACTGCAACACCCATAACCCAA
AAGAGAGATAAAGAGAGCTGAGCAGCCTTCATCCGCCGTCAACACGGAGA
CAACGGGAAGCTCTCTCCGCACAAGGCACGAGCCACGGATGTAACGCAAG
AGTGTTTAGCCCTTGCCCCACGATTGACTGTCAAGAATGGTGGGGGGGAG
AACGCTTCGAACATCCAGGCCGTGAAATGCCCGACGAGGTCCCGCCGAAG
AATGCCCAAGGCTCTTCTCGCTGTTTCAGAACAATTTTAATGTTCCTCCC
GCCGACACGGCGGTGGCCCTAGACAAGCAACAATAGAGATGACATGCACG
GCTGCTTTCCAACAAATTTAAATAAGTAGGTATATCAATCGAGAAAATAT
GACACTACAGCAGTAATACGAAACCGTTTACCAATCGTACATATGCAAAC
AACACACGAT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10052:398..4557+ >mRNA_E-fasciculatus_F_contig10052.65.1 ID=mRNA_E-fasciculatus_F_contig10052.65.1|Name=mRNA_E-fasciculatus_F_contig10052.65.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10052:398..4557+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACGACCGGGCGGCTTCAGACCCTGCTCACCCGGGAGCAGCTGAG
GGAGGCCGAGCGGTGGAGCGACGAGCACATCCTCCCGGCCGTGGCGGACG
CGTGGGAGACAAGGGGCACGGATGAAGACGACCGGGCGGCTTCAGACCCT
GCTCACCCGGGAGCAGCTGAGGGAGGCCGAGCGGTGGAGCGACGAGCACA
TCCTCCCGGCCGTGGCGGACGCGTGGGAGACAAGGGGCACGGCGAAACTG
TTCCTCGAGGCCGTGGAGAAGTTCTTCGTGGGGCAGCAGCAGGAGGAGCC
GCTGCTGAAGGCCATCGAGGAGAACCTGTCGGAGATCTCGGAGAGCGAGC
GGAGGGCGGAGGAGAAGTACAACAAGTTCCGGGTGCTGGCTAAGGAGAGG
GGTTCCACCAACGAAACTGTTCCTCGAGGCCGTGGAGAAGTTCTTCGTGG
GGCAGCAGCAGGAGGAGCCGCTGCTGAAGGCCATCGAGGAGAACCTGTCG
GAGATCTCGGAGAGCGAGCGGAGGGCGGAGGAGAAGTACAACAAGTTCCG
GGTGCTGGCTAAGGAGAGGGGTTCCACCAAGTACAAGGATTTGCTGCCGA
AGAGCATCGCCACGGGGATCATCTGCAAGTTCCGCCTGCTCCCCGGGAAC
AAGGTCTCCGCCATACAGCGAGGAGTGGTTGAGCGCATGGACAAGGTACA
AGGATTTGCTGCCGAAGAGCATCGCCACGGGGATCATCTGCAAGTTCCGC
CTGCTCCCCGGGAACAAGGTCTCCGCCATACAGCGAGGAGTGGTTGAGCG
CATGGACAAGGGCGAGCTGCCGCCGCTGGCCGAGGTCGAGGAGATCCTGG
CGTTCATAGAGAAGATAGGCGTCGACCAGGTGGCCCTAGACGGGGGGTTC
GTTGCTCCTGACGTCGAAGGCGGGGACGAAAGCAGCGGCGGCGGCGGCGG
TGCTGCCACGGCAAAGAGCACTGCCGCCCCCGCGGCCGCGGCAGAGGTGG
CTACTAGTGCTGCGTGAGGCGAGCTGCCGCCGCTGGCCGAGGTCGAGGAG
ATCCTGGCGTTCATAGAGAAGATAGGCGTCGACCAGGTGGCCCTAGACGG
GGGGTTCGTTGCTCCTGACGTCGAAGGCGGGGACGAAAGCAGCGGCGGCG
GCGGCGGTGCTGCCACGGCAAAGAGCACTGCCGCCCCCGCGGCCGCGGCA
GAGGTGGCTACTAGTGCTGCGTGA back to top
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