mRNA_E-fasciculatus_F_contig108.641.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig108.641.1
Unique NamemRNA_E-fasciculatus_F_contig108.641.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: D7FVB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB7_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.040e-64
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 1 
Query:    1 HSMRKIGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPASNKDKADEVTETPVPAVRPEDMPPKQKISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            HS+R +GVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPAS  DKADEVTETPVPAVRPEDMPPKQKIS+DMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY
Sbjct:   18 HSVRAVGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPAS--DKADEVTETPVPAVRPEDMPPKQKISNDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 142
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: A0A7S2V2G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-13
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   76 ETAKRLKEQAAALRESAAESEAEIRPASNKDKADEVTETPVPAVRPEDMPPKQKISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            E A RLK + A   +  AE  A    A+   + +EV    VP V+ ++  P + +S++M+ +LR+ELISQGADPNR++GNPIL+V  IIAVLVI GGQGIFY
Sbjct:   54 EEAARLKAEVAQFEKEKAEKMAAKAAAAPAKQEEEV----VPLVKNQEYKPTE-MSENMKNKLRRELISQGADPNRASGNPILIVGAIIAVLVIAGGQGIFY 150
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: A0A836CMY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMY3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.220e-11
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  238 ISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY*ANLVAP*ETGI 417
            +S+ M+ +LR+ELISQGADPNRS+GN IL+VA +I VLV++GGQGIFY   LV     GI
Sbjct:  107 LSEAMKAKLRKELISQGADPNRSSGNGILIVAAVIGVLVVLGGQGIFYGLPLVGVDVGGI 166
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: A0A7S4D594_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D594_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 1.350e-10
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   76 ETAKRLKEQAAALRESAAESEAEIRPASNKDKADEVTETPVPAVRPEDMPPKQKISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            E AK+L EQAAALR  A   EAE +  ++   A         A+  E+  P+ +IS  M+++LR+EL +QGA+PN++A NPIL+++G+IAVLVI+ G GIFY
Sbjct:   52 EKAKKLAEQAAALRAEADAMEAEKK--ASMPAAXXXXXXXXXAM--EEELPRVEISSAMKEKLRRELEAQGANPNKAAANPILIISGVIAVLVILAGGGIFY 149
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: A0A0G4H860_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H860_VITBC)

HSP 1 Score: 65.5 bits (158), Expect = 4.330e-9
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  229 KQKISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            K +IS DM+KRL +EL  QGA+PN+S GNP L++  IIA LVI+GG+GIFY
Sbjct:  102 KPEISPDMKKRLLRELEGQGANPNKSRGNPYLIIFVIIAALVILGGKGIFY 152
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: W7TC08_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC08_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.560e-8
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  217 DMPPKQKISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            +MPP   +SD+M+++L  E   QGAD N S GNPIL++A +I VLV++GG+G FY
Sbjct:   79 EMPPPTPLSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 133
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BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Match: A0A4D9CZL2_9STRA (Symplekin_C domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZL2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.830e-6
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  238 ISDDMQKRLRQELISQGADPNRSAGNPILVVAGIIAVLVIVGGQGIFY 381
            +SD+M+++L  E   QGAD N S GNPIL++A +I VLV++GG+G FY
Sbjct:  166 LSDNMRQKLLNEARGQGADYNTSNGNPILLIAVVIGVLVVLGGKGFFY 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig108.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVB7_ECTSI1.040e-6495.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V2G0_9STRA1.080e-1350.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CMY3_9STRA1.220e-1161.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D594_HETAK1.350e-1047.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4H860_VITBC4.330e-962.75Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TC08_9STRA4.560e-852.73Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZL2_9STRA7.830e-654.17Symplekin_C domain-containing protein n=2 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig108contigE-fasciculatus_F_contig108:16835..18936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.5e-51
Seed eggNOG ortholog2880.D7FVB7
EggNOG OGs2BW48@1,2T009@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000510.1
Exons3
Model size1362
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig108.641.1prot_E-fasciculatus_F_contig108.641.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig108 17813..18930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.8958087-UTR-E-fasciculatus_F_contig108:16834..178121622927580.8958087-UTR-E-fasciculatus_F_contig108:16834..17812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig108 16835..17812 -
1695995605.3901541-UTR-E-fasciculatus_F_contig108:16834..178121695995605.3901541-UTR-E-fasciculatus_F_contig108:16834..17812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig108 16835..17812 -
1622927580.9457912-UTR-E-fasciculatus_F_contig108:18930..189361622927580.9457912-UTR-E-fasciculatus_F_contig108:18930..18936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig108 18931..18936 -
1695995605.4333894-UTR-E-fasciculatus_F_contig108:18930..189361695995605.4333894-UTR-E-fasciculatus_F_contig108:18930..18936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig108 18931..18936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927580.907394-CDS-E-fasciculatus_F_contig108:17812..178541622927580.907394-CDS-E-fasciculatus_F_contig108:17812..17854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 17813..17854 -
1695995605.402049-CDS-E-fasciculatus_F_contig108:17812..178541695995605.402049-CDS-E-fasciculatus_F_contig108:17812..17854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 17813..17854 -
1622927580.917475-CDS-E-fasciculatus_F_contig108:18099..183201622927580.917475-CDS-E-fasciculatus_F_contig108:18099..18320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 18100..18320 -
1695995605.411749-CDS-E-fasciculatus_F_contig108:18099..183201695995605.411749-CDS-E-fasciculatus_F_contig108:18099..18320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 18100..18320 -
1622927580.930537-CDS-E-fasciculatus_F_contig108:18815..189301622927580.930537-CDS-E-fasciculatus_F_contig108:18815..18930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 18816..18930 -
1695995605.4216356-CDS-E-fasciculatus_F_contig108:18815..189301695995605.4216356-CDS-E-fasciculatus_F_contig108:18815..18930Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig108 18816..18930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig108.641.1

>prot_E-fasciculatus_F_contig108.641.1 ID=prot_E-fasciculatus_F_contig108.641.1|Name=mRNA_E-fasciculatus_F_contig108.641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=126bp
MRKIGVGALRMADGDGDAMSAAEETAKRLKEQAAALRESAAESEAEIRPA
SNKDKADEVTETPVPAVRPEDMPPKQKISDDMQKRLRQELISQGADPNRS
AGNPILVVAGIIAVLVIVGGQGIFY*
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mRNA from alignment at E-fasciculatus_F_contig108:16835..18936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig108.641.1 ID=mRNA_E-fasciculatus_F_contig108.641.1|Name=mRNA_E-fasciculatus_F_contig108.641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig108:16835..18936- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACTCGATGAGGAAGATCGGTGTTGGTGCCCTCCGCATGGCTGATGGTGA
CGGAGACGCCATGAGCGCCGCCGAGGAAACGGCGAAGCGATTGAAAGAAC
AGGCTGCCGCTCTCCGTGAATGTCAGTTATTGTTCTGCGTCATTCATGCC
TGTGGTCCTGTCACGCTTCTGCGGTGGAGCGCTTCGTGTCGTATGGTGCC
TCCTGCACGCCTATTATACTGTGGAGCCTGAGTAGCATCGTGGCTGAGCA
TGCAAGAATGTTGTTTGTCCGGCTGTTTCGTCCCCAGGGTATAGATTGCG
CTGCAGAACTACTGTGCAGTAGGCATTCATGTATCATCACAACTATACTC
CGGCGTTGGTGACAATCCTGCGGAATGTGGCCCTAGTTTTTTTACCCCCC
AGCTCGCTGCACCTCACTGTGCTCTGGCCCGTTGTTGCCCCCCGCCTGCA
CGCGTCTCTTTCAGCCTTCCGCCCCTCCCCCTTTTCCTCCCCCATCTATC
TTCAATCTCTTCAATGGTCCAACGACGAGACGAGACGAGGGCATGCACAA
CATGAGTACGGTCTCTCTCTTACTGATCCTCTCCTCTCCTCTGCTGCAAT
TTCTTGTGTTGTTCAGCGGCAGCCGAAAGCGAGGCGGAGATCCGGCCAGC
ATCGAATAAGGACAAGGCAGACGAGGTCACGGAAACACCTGTGCCCGCAG
TGCGGCCGGAGGACATGCCTCCCAAGCAGAAGATTTCTGACGACATGCAG
AAGCGCCTGAGGCAGGAGCTTATTTCTCAAGGCGCAGACCCCAACAGGAG
CGCGGGAAATCCAATCCTGGTCGTTGCGGGCATCATTGTGAGTTTACAAG
AGTCTGAAAGAGTTTGAAAGAGGCTGGCCGGCTCCGTCGACGTGACCCTC
CTACAATTCCTGTTGTCCTTCTCTTCTCTCGTATTACTTGACTCTACTGT
GTGCTGCCACTGCTATTAATAGCTGTGCGGTGAAGGTGAGTAAAACCCAA
CGGTCCTTTTTCTTTCTGCTGCTGTTTTTCTCCGCGCCTTCCGGACGTTT
TGTTTACACTACACGTTTTGCACATTGCACAGGCTGTGCTGGTCATCGTC
GGTGGGCAGGGCATCTTCTACTGAGCCAACCTCGTTGCACCATGAGAAAC
AGGAATCAAGGAGAAATTGAGGGAATAATAAGCATGGCAGGCAGCAACCA
CGACCGACTCCAGGAACGAACGCAGCTGTTGCTGTTGCTGGCGAATCCAG
ACTCCTTACAGCAGCGATGGTTGGTTTCGCTGTGTGCTCGGAAGTAAGGC
TGGGTTAGTGGCAGCAGGTGTTCAGACCTTTGTTGTCTTTCCTCCACGTT
TTGTTCGAATAATTTGCCAGTAAATACGAGGGAGCCTTGGCGTTGATCGT
TCTGATATTGACGGTCTAGTCTAGAGCTCGACCCTCTTTGCTGGTTCTTT
GAAGGTGACTTCGAAGGTGTCTTTGAAGGTTTCAAGTGGACGTTACCAGA
TCGCTGTAACCCTGTAGCGAATGGAATACACACCTTCCTATTGGTGTCGC
CACCGGAGTTCCTCGGAAAAAAATTGTGATCAACTAGACATTTACTTAGA
AGTCAGTTTTTTTTTTGGTGTAAATGTCAGTTTGCGAATTGACCCTGTAT
GTGCTGCACGTAGGTACTATTGCAACCTTGAGGGTGTATCACGCTAAGAG
GGAGACTTAGATATGCACCGTGTTTGGACAGGCTCGGCAGTAGAAGCATG
ACAGAGAAGGTCTAGTCGTGCTTGATCTTATCCCCTGCATGCTGTTGGAA
AAGAGGGCGATCGGTTATTGTTTAGAGAAACAGGTGCGGCAAACTCGGCG
CCGCATCGTTCAGGGGGAGTTGGTAGCGATCGATGATGCTCTCAGCCCGC
CCAGGATACGATATCGATATTGTGATATCGATATTGTGATCTTGTTGTAT
TGTTGTCCTTGCTATACTACCGTACGGGCGTAGGACCGCGTAAGTTCCAG
CCGATGCACAGATTCGTCTATCTACTGCTAGTATACGGTGTGGGATTTGT
TGCTTGCGCGCTAGCACGATCGTGCCGGAAACTAAACCCTTGAGAATGCC
CG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig108:16835..18936-

>mRNA_E-fasciculatus_F_contig108.641.1 ID=mRNA_E-fasciculatus_F_contig108.641.1|Name=mRNA_E-fasciculatus_F_contig108.641.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-fasciculatus_F_contig108:16835..18936- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGAAGATCGGTGTTGGTGCCCTCCGCATGGCTGATGGTGACGGAGA
CGCCATGAGCGCCGCCGAGGAAACGGCGAAGCGATTGAAAGAACAGGCTG
CCGCTCTCCGTGAATATGAGGAAGATCGGTGTTGGTGCCCTCCGCATGGC
TGATGGTGACGGAGACGCCATGAGCGCCGCCGAGGAAACGGCGAAGCGAT
TGAAAGAACAGGCTGCCGCTCTCCGTGAATCGGCAGCCGAAAGCGAGGCG
GAGATCCGGCCAGCATCGAATAAGGACAAGGCAGACGAGGTCACGGAAAC
ACCTGTGCCCGCAGTGCGGCCGGAGGACATGCCTCCCAAGCAGAAGATTT
CTGACGACATGCAGAAGCGCCTGAGGCAGGAGCTTATTTCTCAAGGCGCA
GACCCCAACAGGAGCGCGGGAAATCCAATCCTGGTCGTTGCGGGCATCAT
TCGGCAGCCGAAAGCGAGGCGGAGATCCGGCCAGCATCGAATAAGGACAA
GGCAGACGAGGTCACGGAAACACCTGTGCCCGCAGTGCGGCCGGAGGACA
TGCCTCCCAAGCAGAAGATTTCTGACGACATGCAGAAGCGCCTGAGGCAG
GAGCTTATTTCTCAAGGCGCAGACCCCAACAGGAGCGCGGGAAATCCAAT
CCTGGTCGTTGCGGGCATCATTGCTGTGCTGGTCATCGTCGGTGGGCAGG
GCATCTTCTACTGAGCTGTGCTGGTCATCGTCGGTGGGCAGGGCATCTTC
TACTGA
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