prot_E-fasciculatus_F_contig108.640.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig108.640.1
Unique Nameprot_E-fasciculatus_F_contig108.640.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length656
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig108.640.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 200..250
e-value: 450.0
score: 0.3
coord: 109..147
e-value: 320.0
score: 1.2
coord: 591..634
e-value: 5.9
score: 12.1
coord: 157..196
e-value: 0.0021
score: 27.3
coord: 490..529
e-value: 1.3
score: 16.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 163..196
e-value: 0.0099
score: 16.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 164..196
score: 11.578
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 471..652
e-value: 3.0E-10
score: 41.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 42..300
e-value: 2.4E-17
score: 65.0
NoneNo IPR availablePANTHERPTHR44019FAMILY NOT NAMEDcoord: 156..639
coord: 74..253
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 164..205
score: 10.364
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 116..638

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig108contigE-fasciculatus_F_contig108:4509..9466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig108.640.1mRNA_E-fasciculatus_F_contig108.640.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig108 4509..9677 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig108.640.1 ID=prot_E-fasciculatus_F_contig108.640.1|Name=mRNA_E-fasciculatus_F_contig108.640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=656bp
MATRLRFRDRPARRRGSTRYPWSLQPVSRIALGQHPLEFVRRKAWTSAPV
RFGNGLSAVTSLCLCDEASAGGPSLLISGDEDGGVSVQRVQAEREGGSEG
STPSPPGWLGTPERARLHSSCVNTIKILPDQRGYVCAGDDGALSAVATFE
TSSAEDLRRATFALTGHSSFVTDCDTAESGHAILSSSTDGRMLLWDPVAT
NTPVASVSVGRPVNSACFSAGDPYALLCAPELGTNCTRGNGNDDLVQIWD
LRSLRCFKDAIPAAVATAFGEDPPATTPHASMQPPPPQSPQFWATSTTRS
STARTPAHVPPWLTTVLGSSVPSPATPLLRRPAWTGDSNDAESVASSTRG
SRERCSYAYDTPSGKENEFPLRSSGGSTTSRISSASSSCSNSPWSGSRGG
IEGASTPGSNPSSSSSTDRGKGKQAPARPTRKVLLPARDEPHARLSVSSL
PAASGCLHEGNGKTWIPGGLKTWQASRRRVRTAGARVCAGEACVACSSSA
AASACSIQVSSDGKGILVGSRNRTVTLFDTQSHKVVYRFGHPRLSRARPV
LVESSPNGGVGGWGRGRGGTGSGDVFAGTMEGELRSWRVGSQFPNRVFKK
AGHHQGFEIYSVAVSNSGCMFASSDSSGAVYVQSATSGRDTQDSSRADAA
HAGGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat