mRNA_E-fasciculatus_F_contig1005.62.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI) HSP 1 Score: 341 bits (874), Expect = 1.210e-110 Identity = 179/225 (79.56%), Postives = 198/225 (88.00%), Query Frame = 2
Query: 260 FVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTGPRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIGTSL 934
FVVTD DRETVID+ VYSSMR+GD+WRRNP A+RLFLVL+NI P+EG VE+E Y PHFN ITKTGDAHF K+ HAV+EL+DNSIQATTDN GPRTV+IEVELGG+GGSFLVVKDNGRGM+AAGLK+FATYFLTQENRGVSGPLGSSTPAFVESQPS QGGS SGS G+QTA+GKGKGPA R GG+ GK+KGSICSGFISKFGVGALQAGFYIG+ L
Sbjct: 5 FVVTDFDRETVIDEAVYSSMRAGDYWRRNPKANRLFLVLDNISAPLEGDVELEVSYQPHFNTITKTGDAHFSKIPHAVAELVDNSIQATTDNPGPRTVEIEVELGGRGGSFLVVKDNGRGMNAAGLKDFATYFLTQENRGVSGPLGSSTPAFVESQPSVSQGGSA---SGSAGGAQTANGKGKGPAAPRPHGGTPGKMKGSICSGFISKFGVGALQAGFYIGSCL 226
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE) HSP 1 Score: 275 bits (702), Expect = 5.310e-80 Identity = 137/178 (76.97%), Postives = 159/178 (89.33%), Query Frame = 2
Query: 134 MGEKITLQRRGSKAEIQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTGPRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQ 667
MGE+ITLQRRGSKAE QLSSFATF LF+KHV+S+ V+ EEFVVTD DRETVID+ VY SMR+GD+WRRNP A+RLFLVL++I DP+EG VE+E Y PHFN ITK+GDAHF K+ HAV+EL+DNSIQATTDN GPRTV+IEVELGG+GGSFLVVKDNGRGM+A+GLK+FATYFLTQ
Sbjct: 1 MGERITLQRRGSKAEFQLSSFATFSLFEKHVKSKLEVD-SEEFVVTDFDRETVIDEAVYLSMRAGDYWRRNPKANRLFLVLDSINDPLEGDVELEVSYQPHFNTITKSGDAHFSKIPHAVAELVDNSIQATTDNVGPRTVEIEVELGGRGGSFLVVKDNGRGMNASGLKDFATYFLTQ 177
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI) HSP 1 Score: 140 bits (352), Expect = 7.040e-35 Identity = 101/261 (38.70%), Postives = 135/261 (51.72%), Query Frame = 2
Query: 155 QRRGSKAEIQLSSFATFPLFKKHV-ESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTGPRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIGTSL 934
QR+ + L+S+ TF FK+H E F ++ FVV DR++VI D VY SM SG++ R FLVL++I +E ++ + PH + G +H ++ V+ELIDNSIQAT N R V++EV L GK SFLVV+DNG GM A GL++FATY L E RG+ GP + G G +T G R +I SG ISKFGVGAL+AGFYIG+ +
Sbjct: 10 QRKPGVVTVPLASYPTFSDFKEHCRELFFKNSIEASFVVATSDRKSVITDDVYRSMVSGEYLGGQKQLDRTFLVLDHIGARLEVPAKMAIGFSPHIGTLLGAGASHLNRIDDGVAELIDNSIQATRGNA-ERKVEVEVVLNGKSTSFLVVRDNGCGMHAKGLEDFATYALNMEARGMQGPTAT----------------------------------GGGSSTSSVRQGMR-----AIGSGEISKFGVGALEAGFYIGSRI 230
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: UPI000A2A7652 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7652) HSP 1 Score: 83.6 bits (205), Expect = 4.920e-14 Identity = 80/269 (29.74%), Postives = 112/269 (41.64%), Query Frame = 2
Query: 143 KITLQRRGSKAEIQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSG-DHW----RRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTG---PRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIG 925
K+ L + IQ+S ++ F+K V EF + +F ++D D V D+ +S + W N +A +L +L Y H N +T++G+ HF A E +DNSIQAT N PRT+D+ + L K V DNG GM+ GLK FATYFL+Q +RG+ PA+++ GFISKFGVGA QAGFY+G
Sbjct: 7 KVLLSCNDTDKSIQVSKQCSYHEFRKKVHLEFPF-LPNDFSISDSDFVEVTDESFEEIKQSRLETWCMVRSSNKEACKLDKPRYELLR-----------YDVHPNALTQSGNYHFSSGYQAFCEFVDNSIQATATNHEKNLPRTIDLHIFLKEK---LAAVFDNGEGMTYDGLKAFATYFLSQADRGLERSELDQIPAYLD--------------------------------------------------GFISKFGVGATQAGFYLG 210
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: A0A6P8HKA8_ACTTE (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HKA8_ACTTE) HSP 1 Score: 80.9 bits (198), Expect = 3.910e-13 Identity = 58/170 (34.12%), Postives = 75/170 (44.12%), Query Frame = 2
Query: 425 YPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTG---PRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIG 925
Y H N +T++G+ HF A E +DNSIQAT N PR +++ + L K + DNG GM+ GLK FATYFL+Q +RG+ P PAF++S FISKFGVGA QAGFY+G
Sbjct: 92 YDVHPNALTQSGNYHFSSSYQAFCEFVDNSIQATAKNLEKDIPRKIELHIFLKEK---VAAIFDNGEGMTYEGLKAFATYFLSQADRGLEKPELDQIPAFLDS--------------------------------------------------FISKFGVGATQAGFYLG 208
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: UPI0009E56605 (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E56605) HSP 1 Score: 80.9 bits (198), Expect = 3.910e-13 Identity = 77/256 (30.08%), Postives = 111/256 (43.36%), Query Frame = 2
Query: 179 IQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGD-HWRRNPDAHRLFLVLNNILDPVE---GHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTG---PRTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIG 925
+++ TF F+ V+S F + E F ++D D ++ + +G+ H +N LV + D V+ H E+ Y H N +T++G+ HF A E IDNSIQAT+ N RT+DI + L K + + DNG GM+ GLK FATYFL+Q +RG+ PA+++ G ISKFGVGA QAGFY+G
Sbjct: 17 LKIQRDCTFDEFRTQVKSLFP-HLPEHFTISDGD---------FNELDTGNFHQVKNSRLETWCLVRGSKQDAVKLDKPHSELMR-YDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTNNCRDMERTIDIHIFLRDK---LVAIFDNGEGMTYEGLKAFATYFLSQADRGLEKEEVDLIPAYLD--------------------------------------------------GAISKFGVGATQAGFYLG 208
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: UPI001CF32C8A (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF32C8A) HSP 1 Score: 80.1 bits (196), Expect = 7.070e-13 Identity = 75/255 (29.41%), Postives = 112/255 (43.92%), Query Frame = 2
Query: 179 IQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVE---GHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTGP---RTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIG 925
+++ TF F+K+V+S F + ++F ++D D +++D H +N LV + + + H E+ Y H N +T++G+ HF A +E IDNSIQAT+ N R +++ V L K +VV DNG GM+ GLK FATYFL+Q +RG+ TP +++ G ISKFGVGA QAGFY+G
Sbjct: 17 LKIKKDCTFEEFRKNVKSIFP-HLPKDFTISDGDFSELLEDNF--------HVLKNSRLETWCLVRGSTDESFKLDKPHSELMR-YDVHPNALTQSGNYHFSASYQAFAEFIDNSIQATSINNTKDMDRVIEVHVFLKDK---LVVVFDNGEGMTYEGLKAFATYFLSQADRGLEREEVDLTPGYLD--------------------------------------------------GAISKFGVGATQAGFYLG 208
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: UPI0018D84B72 (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D84B72) HSP 1 Score: 79.7 bits (195), Expect = 9.530e-13 Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 2
Query: 155 QRRGSKAE--IQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIK------MSHAVSELIDNSIQATTDNTGPRTVDIEVELGGKGG-SFLVVKDNGRGMSAAGLKEFATYFLTQ 667
+R+GS+ E I L + F+ + EF + + FV+T +R+ V DD + SGD +LN+I + + + PH++ + K+G + + A++ELIDNS+ AT+DN GPR++++ + L G S + V DNG+GM++ L +A Y L++
Sbjct: 32 RRKGSEPERRIDLGGVFNYQTFRDRIRQEFNISSNTHFVITTTNRKEVNDDEYEDLVDSGD----------TLYILNHISQNLPAPAKERVEFLPHYDTLVKSGIYEYYASAGQNPLPFALAELIDNSLTATSDNLGPRSIELRLFLDESGDKSMICVIDNGKGMTSRQLNNWAIYRLSK 201
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: A0A2B4STX2_STYPI (Structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4STX2_STYPI) HSP 1 Score: 79.0 bits (193), Expect = 1.710e-12 Identity = 75/256 (29.30%), Postives = 109/256 (42.58%), Query Frame = 2
Query: 179 IQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPV----EGHVEVETCYPPHFNVITKTGDAHFIKMSHAVSELIDNSIQATTDNTGP---RTVDIEVELGGKGGSFLVVKDNGRGMSAAGLKEFATYFLTQENRGVSGPLGSSTPAFVESQPSGCQGGSGGGDSGSTEGSQTAHGKGKGPATRRAPGGSRGKVKGSICSGFISKFGVGALQAGFYIG 925
++L +TF F+ V+S F + E F ++D D ++ + SG+ + ++ + D + H E+ Y H N +T++G+ HF A E IDNSIQAT+ N RTVDI + L K + + DNG GM+ GLK FATYFL+Q +RG+ PA+++ G ISKFGVGA QAGFY+G
Sbjct: 56 LKLDRESTFDEFRAQVKSLFP-HLPEHFTISDGD---------FNELDSGNFHNVKNSRLETWCLVRSSKDEAFKLDKPHSELMR-YDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTNNCKDMERTVDIHIFLKDK---LVAIFDNGEGMTYEGLKAFATYFLSQVDRGLEKEEVDLIPAYLD--------------------------------------------------GCISKFGVGATQAGFYLG 247
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Match: A0A8B7Y8R7_ACAPL (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y8R7_ACAPL) HSP 1 Score: 78.6 bits (192), Expect = 2.310e-12 Identity = 51/180 (28.33%), Postives = 91/180 (50.56%), Query Frame = 2
Query: 155 QRRGSKAE--IQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRETVIDDVVYSSMRSGDHWRRNPDAHRLFLVLNNILDPVEGHVEVETCYPPHFNVITKTGDAHFIK------MSHAVSELIDNSIQATTDNTGPRTVDIEVELGGKGG-SFLVVKDNGRGMSAAGLKEFATYFLTQ 667
+R+G++ E I + FP FK+ + EF + + FV+ +RE + D+ Y + D+ +LN+I + + + PH++ + K+G + + A +ELIDNS+ AT DN GPRT+++ + L G S + + DNG+GM++ L +A Y L++
Sbjct: 31 RRKGNEPERKIDIGGVFNFPTFKERIRQEFNISNNIHFVIATTNREEIKDNGGYEELI---------DSGDTLYILNHINQNLPAPAKERVEFLPHYDTLVKSGMYEYYASAGQNPLPFAFAELIDNSLTATCDNLGPRTIELRLFLDESGDKSMICIIDNGKGMTSRQLNNWAIYRLSK 201 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1005.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1005.62.1 >prot_E-fasciculatus_F_contig1005.62.1 ID=prot_E-fasciculatus_F_contig1005.62.1|Name=mRNA_E-fasciculatus_F_contig1005.62.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=268bp MGEKITLQRRGSKAEIQLSSFATFPLFKKHVESEFGVEVDEEFVVTDVDRback to top mRNA from alignment at E-fasciculatus_F_contig1005:1644..15076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1005.62.1 ID=mRNA_E-fasciculatus_F_contig1005.62.1|Name=mRNA_E-fasciculatus_F_contig1005.62.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=13433bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1005:1644..15076+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1005:1644..15076+ >mRNA_E-fasciculatus_F_contig1005.62.1 ID=mRNA_E-fasciculatus_F_contig1005.62.1|Name=mRNA_E-fasciculatus_F_contig1005.62.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1005:1644..15076+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |