mRNA_E-fasciculatus_F_contig1.6.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1.6.1
Unique NamemRNA_E-fasciculatus_F_contig1.6.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1.6.1 vs. uniprot
Match: A0A6H5L5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C1_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 2.960e-113
Identity = 276/356 (77.53%), Postives = 290/356 (81.46%), Query Frame = 1 
Query:   49 MASFGLAAGDAVAPLVAGASHEEEKAYWDMINEREQQXXXQRFGRPPSTDPSPAKKTDQWFMSKLSGIEIGTAYDNLSKNLGDKSXXXXXXXXXXXXXX-------KGYTLANTSTATAAISRFKKQIVSAVDGVPLRPDEDRLRESGTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---QGAALEEALRSSSVGVTQTAKRAGNKEKGQLNGGMVDESAPVLGLGALGAVFKKKATGVEVVAQAAKVGGVETRDAVSLGATIPH-SSP---AVGAAGDAAAXXXXXXXXX-DGGAAALKIIPRTASLVGGRQWAVLASVYDTTASVIDETVGDMFT 1071
            MASF LA GDAVAPLV GAS EEE+AYWDM NEREQ XX QRFGRPPSTD SP ++TDQ  MSKLSGIEIGT YDNLSK+LGD+ XXXXXXXXXXXXXX       KGYTLAN STATAAISRFKKQIV+AVDGVPLRPD DRLRESGTTT           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +GAA EEALRS SVG TQTAKR GNK +GQLNG MVDESAPVLGLG LGAVFKKK   VEV AQ A+  GVE+R+A+SL AT+P  SSP   AVGAAGDA  XXXX      DGGAAALKIIPR+ASLVGGRQWAVLASVYDTTASVIDETV DMFT
Sbjct:    1 MASFDLAEGDAVAPLVDGASLEEEEAYWDMNNEREQ-XXQQRFGRPPSTDASPTQRTDQGLMSKLSGIEIGTVYDNLSKSLGDRXXXXXXXXXXXXXXXXXXXXXXKGYTLANASTATAAISRFKKQIVAAVDGVPLRPDADRLRESGTTTSAETMTTEIDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGAAQEEALRSFSVGCTQTAKR-GNKGRGQLNGSMVDESAPVLGLGVLGAVFKKKVAEVEVAAQTAEAVGVESRNAISLDATVPPGSSPGDAAVGAAGDAXXXXXXESQSGRDGGAAALKIIPRSASLVGGRQWAVLASVYDTTASVIDETVSDMFT 354
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5C1_9PHAE2.960e-11377.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1contigE-fasciculatus_F_contig1:97772..101304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_006060.1
Exons2
Model size1750
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1.6.1prot_E-fasciculatus_F_contig1.6.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1 97820..100628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.915034-UTR-E-fasciculatus_F_contig1:97771..978191622927498.915034-UTR-E-fasciculatus_F_contig1:97771..97819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1 97772..97819 +
1695995563.2469444-UTR-E-fasciculatus_F_contig1:97771..978191695995563.2469444-UTR-E-fasciculatus_F_contig1:97771..97819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1 97772..97819 +
1622927498.9614139-UTR-E-fasciculatus_F_contig1:100628..1013041622927498.9614139-UTR-E-fasciculatus_F_contig1:100628..101304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1 100629..101304 +
1695995563.2776732-UTR-E-fasciculatus_F_contig1:100628..1013041695995563.2776732-UTR-E-fasciculatus_F_contig1:100628..101304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1 100629..101304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.929296-CDS-E-fasciculatus_F_contig1:97819..978861622927498.929296-CDS-E-fasciculatus_F_contig1:97819..97886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1 97820..97886 +
1695995563.2552059-CDS-E-fasciculatus_F_contig1:97819..978861695995563.2552059-CDS-E-fasciculatus_F_contig1:97819..97886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1 97820..97886 +
1622927498.9458308-CDS-E-fasciculatus_F_contig1:99669..1006281622927498.9458308-CDS-E-fasciculatus_F_contig1:99669..100628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1 99670..100628 +
1695995563.2633684-CDS-E-fasciculatus_F_contig1:99669..1006281695995563.2633684-CDS-E-fasciculatus_F_contig1:99669..100628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1 99670..100628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1.6.1

>prot_E-fasciculatus_F_contig1.6.1 ID=prot_E-fasciculatus_F_contig1.6.1|Name=mRNA_E-fasciculatus_F_contig1.6.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=342bp
MASFGLAAGDAVAPLVAGASHEEEKAYWDMINEREQQQQQQRFGRPPSTD
PSPAKKTDQWFMSKLSGIEIGTAYDNLSKNLGDKSKALGDQAKTLGDQAK
GYTLANTSTATAAISRFKKQIVSAVDGVPLRPDEDRLRESGTTTAAKATT
AENDKKENRVSLPPPEQLQEEEKSAEGEQERQEQQQEQPQGAALEEALRS
SSVGVTQTAKRAGNKEKGQLNGGMVDESAPVLGLGALGAVFKKKATGVEV
VAQAAKVGGVETRDAVSLGATIPHSSPAVGAAGDAAAGGGESQTGGDGGA
AALKIIPRTASLVGGRQWAVLASVYDTTASVIDETVGDMFT*
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mRNA from alignment at E-fasciculatus_F_contig1:97772..101304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1.6.1 ID=mRNA_E-fasciculatus_F_contig1.6.1|Name=mRNA_E-fasciculatus_F_contig1.6.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1:97772..101304+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCCATCGGCTTTGGTTTCGTGTACGGCAAGGTGACAAAGCAGAAAAT
GGCAAGCTTCGGTCTCGCAGCAGGCGATGCGGTGGCACCCCTCGTCGCCG
GTGCAAGCCACGAAGGTATGATCAACCCTCGACACTTTCATAGCTCGCTT
TCACACCATTGCTGACGTGAGTGACAGCAACAATTTCACAACAAGGAAGC
GGTGGCGAGGTTTCGGCATTGCGACCCAAGGGCAATGCAGCTCATGTGCG
CGTGCGTGCCTTTCTCTGTTTCACGACCGGTGAATACAACCATCCGTATA
GTGTATAGTGGCAGCTCGAACGTAAAGCCGCTCGGCCAAGTACTTCGTAC
ATAGGTCCAACTACTGTCGATGCTCTGTGCCTCGAAGATTGTTCAACAAG
CCAACACCGGCCAAATAAAACATCAAACACAAACAACGTCAATCGAACAC
ATGGAGCTCCCATCTCCGGCGGAAGCTCTCTTTCACATTTCCAAGTAGCT
ACAATAGGCTGCTAGTGTTCACAGGTAAATTCAATTCACAGGTAATTGGA
CGCGACCCATTCACACACGGATTGATTGGTTGTGTGCGAATCTTCATTGT
GCTCTCTTATAGGACCAGTACACGGTTGCCCGAGGCAAACTGCGTTGCCA
ATAATTGAACGCGACCCCTTCATTCCACTTACTTTCACGGGAACATTGAT
GAAATTCCGCCTCATACTCTAGCATCGTTGCCGATTATTAGCGATTGTTT
ATTAGACTAGGCCCGTACGACGGCTGGACCCTTCTCGCGATAAAAATATA
AATTGAGCCAATTCAGCACGCACCGTAGGAGGTGGGGCATGTTGTGTTAT
ATTAAGAGGAAGAAAAAAAGCCCTGGTGTTATTACCCCCTCCTGTAGACC
CTGGATGGTTGTAGTCGTACGAAAAAGTACACTGAAAAGTGAAGTACTCT
ACCCACACGAAGCGTGCCGTCTCACCACGGAAAATGTGGGGACTGTCGCC
ATTACAATGCACAAAACACACACCACGGAGACACATCCCGAAGACAAGCG
TACATTGGTGAGGCGTTCATGGAAGCTACAGTATAACGGTCACGGGACTG
GCTGATCCGTGCAGGCAAAAAACCGAGCTCGGATTGCGAACACGCCCAAG
CCATCAACGACTACGGAAGATTTGCCGCTTCTCGAAAACTGTGGGAGGTA
TTTCCGGTGGTCGTGGTTGTTGTTGTTCTCTTGAGCGAAACACCGACAGA
TAATAGGTTGCTCCTCTTCTAACACTCTTTACAAGACACAGATAGATACC
TACATTCCGAGGTCCCTACGCTGATGGAGTACATCCCGCGTGCTCCGGGA
CATGCCGACGCGGCCAAACTACAACGGATGTTGAAATGCAGCCTAGCTGA
TGCCCAAGCCCTACAGGATCCTATCCTACAGTTGATAGGATTTGTTCCCC
CGTCGCCCCCTCCCCGACATCCCACCGGGAGGCCTCACGGTGGGAGCACG
TTGAACTATCTACTACCAAACAACGAGGCCACCATACCTTGCAAGCATCT
CGCAGACGAACGAACGGGTGCTGAAGGACAAGTCTCTGGTACCCTAAACA
TCTCCTCCCCGGTTCTTCCTGCGAGGGGGGGCACGTTATACCGACCAACC
GCCACAGCATTGTCTACAATTCGAAAGAAAGCTACTTCAACGCCCTTGTC
GGGCCGAGAGGAAACGCAAGGAAAGGTTCCCAACGACTGTGCTTTCAGGC
CCGCCTTACTCGACCCCCTTCAATGTTCCGAGTGCGAAACATACCTGTAC
ATGCTGTATCATTCTGACCCTGAAACGCCGGCATTTTCATCTGGAAAATG
CGTCAACTTTTTCATGAGAAACGAAACAAATACTGTCCCCCAACGCAGAG
GAAAAGGCGTACTGGGACATGATCAACGAGCGAGAACAGCAGCAGCAGCA
ACAGCGTTTCGGACGGCCTCCATCGACAGATCCAAGCCCCGCCAAAAAAA
CGGACCAATGGTTTATGTCCAAGCTATCGGGCATCGAAATCGGCACTGCC
TACGACAACCTGTCGAAAAACCTGGGTGACAAATCGAAAGCTCTGGGCGA
CCAGGCCAAAACCCTGGGCGACCAGGCCAAAGGGTACACCCTCGCAAACA
CGAGCACGGCCACGGCGGCGATAAGCCGCTTCAAGAAGCAGATCGTCTCC
GCCGTTGACGGCGTGCCCCTGAGGCCCGACGAAGACCGGCTGCGAGAGAG
TGGTACCACCACTGCAGCCAAAGCAACGACGGCTGAGAATGATAAAAAGG
AGAACCGGGTCTCGCTGCCACCGCCGGAGCAATTGCAAGAGGAAGAAAAG
AGTGCAGAAGGTGAACAGGAGCGGCAGGAACAACAACAAGAGCAACCGCA
AGGAGCTGCGCTGGAGGAAGCTCTCCGCAGTTCTTCTGTCGGGGTTACTC
AAACGGCGAAAAGAGCTGGAAACAAGGAGAAGGGGCAGCTCAACGGAGGG
ATGGTAGACGAAAGCGCCCCGGTGCTAGGGCTAGGTGCCTTGGGTGCTGT
TTTCAAGAAGAAGGCCACCGGGGTAGAAGTTGTTGCACAGGCCGCCAAGG
TGGGGGGTGTAGAAACTCGTGACGCCGTTTCCTTAGGTGCTACCATCCCG
CATAGTTCTCCTGCTGTTGGTGCTGCTGGTGATGCCGCCGCTGGCGGAGG
AGAAAGTCAGACTGGAGGAGACGGCGGTGCCGCAGCGCTCAAGATTATCC
CTAGGACTGCTTCGCTGGTGGGGGGAAGACAGTGGGCGGTGCTGGCGTCG
GTATATGATACGACTGCATCTGTTATCGACGAAACCGTTGGCGACATGTT
CACGTAAATTCCGCATGATCCGGAAGATTTTGGTGTTTTCGAACGCCGCG
ATGCGTGATGGATATCGTGCTTTCGCAGTCCGTACCGAACGTCAAAACCA
GCAGTACCGGGGTATTCACGACTGGTGATTAAGTTTGAATTTGTAGTTCT
TCGGCCGTACCCCCCCCTCCAAGGCGGCCTACAACCCAGGAACCCTTGTT
CTTGCCTAAGTTATCTGAAGTTCACGAACGACAATACATCGTTCTTCTTA
ACCCATTGGAAAGATATTTCCGTCCTCGCCTTTAACCATAGAATAATAAA
CTGGATGACTAGGTGTTATGTCGCCCTTGTTGGCTATCATTTATCGGTAG
GGGGTTTCGGTGTGGCTTCGAGATGGTGGTGGCAGGGCGTCCTTGCAGAA
ACAATTCTTCCCGAGCAGGTCGAATGCCGATATTTCCAACTCTCCCACCA
AGCTGGCACCGTACGTTTGTGGTGGAAGGGTCCCGTTTTGCTCGGGCAGC
GTACGCACGTGTGTGTGTCACATGCGAACAATCCGTCTTTGAGCATCTCA
CTGCAGAAGCAAAGGCTTGCCGGGGGATCATCGGGGTCTCACAGTCAATA
TCAATGGGGGAGTGTGCTTGTGTCATTGCATCGGCGATCGCCTTTGGCAT
GCCTTATGTGTGGTACGTTGTTGTCCGTTTGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1:97772..101304+

>mRNA_E-fasciculatus_F_contig1.6.1 ID=mRNA_E-fasciculatus_F_contig1.6.1|Name=mRNA_E-fasciculatus_F_contig1.6.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1:97772..101304+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAAGCTTCGGTCTCGCAGCAGGCGATGCGGTGGCACCCCTCGTCGC
CGGTGCAAGCCACGAAGATGGCAAGCTTCGGTCTCGCAGCAGGCGATGCG
GTGGCACCCCTCGTCGCCGGTGCAAGCCACGAAGAGGAAAAGGCGTACTG
GGACATGATCAACGAGCGAGAACAGCAGCAGCAGCAACAGCGTTTCGGAC
GGCCTCCATCGACAGATCCAAGCCCCGCCAAAAAAACGGACCAATGGTTT
ATGTCCAAGCTATCGGGCATCGAAATCGGCACTGCCTACGACAACCTGTC
GAAAAACCTGGGTGACAAATCGAAAGCTCTGGGCGACCAGGCCAAAACCC
TGGGCGACCAGGCCAAAGGGTACACCCTCGCAAACACGAGCACGGCCACG
GCGGCGATAAGCCGCTTCAAGAAGCAGATCGTCTCCGCCGTTGACGGCGT
GCCCCTGAGGCCCGACGAAGACCGGCTGCGAGAGAGTGGTACCACCACTG
CAGCCAAAGCAACGACGGCTGAGAATGATAAAAAGGAGAACCGGGTCTCG
CTGCCACCGCCGGAGCAATTGCAAGAGGAAGAAAAGAGTGCAGAAGGTGA
ACAGGAGCGGCAGGAACAACAACAAGAGCAACCGCAAGGAGCTGCGCTGG
AGGAAGCTCTCCGCAGTTCTTCTGTCGGGGTTACTCAAACGGCGAAAAGA
GCTGGAAACAAGGAGAAGGGGCAGCTCAACGGAGGGATGGTAGACGAAAG
CGCCCCGGTGCTAGGGCTAGGTGCCTTGGGTGCTGTTTTCAAGAAGAAGG
CCACCGGGGTAGAAGTTGTTGCACAGGCCGCCAAGGTGGGGGGTGTAGAA
ACTCGTGACGCCGTTTCCTTAGGTGCTACCATCCCGCATAGTTCTCCTGC
TGTTGGTGCTGCTGGTGATGCCGCCGCTGGCGGAGGAGAAAGTCAGACTG
GAGGAGACGGCGGTGCCGCAGCGCTCAAGATTATCCCTAGGACTGCTTCG
CTGGTGGGGGGAAGACAGTGGGCGGTGCTGGCGTCGGTATATGATACGAC
TGCATCTGTTATCGACGAAACCGTTGGCGACATGTTCACGTAAAGGAAAA
GGCGTACTGGGACATGATCAACGAGCGAGAACAGCAGCAGCAGCAACAGC
GTTTCGGACGGCCTCCATCGACAGATCCAAGCCCCGCCAAAAAAACGGAC
CAATGGTTTATGTCCAAGCTATCGGGCATCGAAATCGGCACTGCCTACGA
CAACCTGTCGAAAAACCTGGGTGACAAATCGAAAGCTCTGGGCGACCAGG
CCAAAACCCTGGGCGACCAGGCCAAAGGGTACACCCTCGCAAACACGAGC
ACGGCCACGGCGGCGATAAGCCGCTTCAAGAAGCAGATCGTCTCCGCCGT
TGACGGCGTGCCCCTGAGGCCCGACGAAGACCGGCTGCGAGAGAGTGGTA
CCACCACTGCAGCCAAAGCAACGACGGCTGAGAATGATAAAAAGGAGAAC
CGGGTCTCGCTGCCACCGCCGGAGCAATTGCAAGAGGAAGAAAAGAGTGC
AGAAGGTGAACAGGAGCGGCAGGAACAACAACAAGAGCAACCGCAAGGAG
CTGCGCTGGAGGAAGCTCTCCGCAGTTCTTCTGTCGGGGTTACTCAAACG
GCGAAAAGAGCTGGAAACAAGGAGAAGGGGCAGCTCAACGGAGGGATGGT
AGACGAAAGCGCCCCGGTGCTAGGGCTAGGTGCCTTGGGTGCTGTTTTCA
AGAAGAAGGCCACCGGGGTAGAAGTTGTTGCACAGGCCGCCAAGGTGGGG
GGTGTAGAAACTCGTGACGCCGTTTCCTTAGGTGCTACCATCCCGCATAG
TTCTCCTGCTGTTGGTGCTGCTGGTGATGCCGCCGCTGGCGGAGGAGAAA
GTCAGACTGGAGGAGACGGCGGTGCCGCAGCGCTCAAGATTATCCCTAGG
ACTGCTTCGCTGGTGGGGGGAAGACAGTGGGCGGTGCTGGCGTCGGTATA
TGATACGACTGCATCTGTTATCGACGAAACCGTTGGCGACATGTTCACGT
AA
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