mRNA_E-fasciculatus_F_contig10048.60.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10048.60.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI) HSP 1 Score: 498 bits (1282), Expect = 1.100e-158 Identity = 476/526 (90.49%), Postives = 480/526 (91.25%), Query Frame = 1 Query: 19 RGREERDSAAMSMAKKCIEEEMETFRQFQQVMIAGGETKSVQQKEREAFSQLYSSPPALAGGQDGGLAMSKAGAAVPTRKAAMEIEIEAGGGVDVREGQASAITEIWSKVEIKEGEAPPHPPAHLGGAPMMRQGVGTRSHAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIGGSRNSWSQQLDQLRTDDVIPTPLEINSPGGAGDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQGTFPAAAAGEK-CRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQPIKGASTPSGEWSRRSRPPATAPTPXXXXXXXXXXXXXXXXXXXXDLKRHAPDSSQRLGRMNIVTGDGXXXXXXXXXXXXXXXXXXXX-ALFDAHAAALQHNMQALSIDDEPSPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVPPAFK 1590
RGREERDSAAMSMAKKCIEEEMETFRQFQQVMIAGG+TKSVQQKEREAFSQLYSS PALA QDGG AMSKAGAAVPTRKAAMEIE AGGGVDVREGQASAITEIWSKVEIKEGEAPP PA LGGAPMMRQGVGTRS AAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SIGGSRNSWSQQLDQLRTDDVIPTPLEI+SPGG GDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQGTF A AA EK GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P KG T SGEW RR XXXXXXXXXXXXXXXXXXD+KRHAPDSSQRLGRMNIVTGDGXXXXXXXXXXXXXXXXXXXX ALFDAHAAALQH+MQALSIDDEPSPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVPPAFK
Sbjct: 615 RGREERDSAAMSMAKKCIEEEMETFRQFQQVMIAGGDTKSVQQKEREAFSQLYSSLPALAASQDGGPAMSKAGAAVPTRKAAMEIE--AGGGVDVREGQASAITEIWSKVEIKEGEAPPQSPALLGGAPMMRQGVGTRSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SIGGSRNSWSQQLDQLRTDDVIPTPLEIHSPGGGGDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQGTFSATAAREKRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQMSDPSKGTFTSSGEWRRRXXXXXXX-----XXXXXXXXXXXXXXXXXXDVKRHAPDSSQRLGRMNIVTGDGXXXXXXXXXXXXXXXXXXXXXALFDAHAAALQHDMQALSIDDEPSPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVPPAFK 1128
BLAST of mRNA_E-fasciculatus_F_contig10048.60.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE) HSP 1 Score: 440 bits (1132), Expect = 4.480e-138 Identity = 411/529 (77.69%), Postives = 419/529 (79.21%), Query Frame = 1 Query: 7 GGGERGREERDSAAMSMAKKCIEEEMETFRQFQQVMIAGGETKSVQQKEREAFSQLYSSPPALAGGQDGGLAMSKAGAAVPTRKAAMEIEIEAGGGVDVREGQASAITEIWSKVEIKEGEAPPHPPAHLGGAPMMRQGVGTRSHAAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIGGSRNSWSQQLDQLRTDDVIPTPLEINSPGGAGDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQGTFPAAAAGEKCRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQPIKGASTPSGEWSRRSRPPATAPTPXXXXXXXXXXXXXXXXXXXXDLKRHAPDSSQRLGRMNIVTGDGXXXXXXXXXXXXXXXXXXXXA-LFDAHAAALQHNMQALSIDDEPSPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVPPAFK 1590
GGG RGR +RDSAA+SMAKKCIEE EREAFSQLYSS PALA GQDGGLAMSKAGAAVPTRKAAMEI AGGGVDVREGQASAITEIWSKVEIKEGEAP PA G APMMRQGVGTRS AAAVXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SIGGSRNSWSQQLDQLRTDDVIPTPLEI+SP G GDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQ TF A AAGEK G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P KG ST SGEWSRR+RPP TAPTP XXXXXXXXXX D+KRHAPDS+QRLGR+NIVTG XXXXXXXXXXXXXXXXXXXX L DAHAAALQH+MQALSIDDE SPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVP AFK
Sbjct: 487 GGGGRGRGDRDSAAISMAKKCIEE------------------------EREAFSQLYSSLPALAAGQDGGLAMSKAGAAVPTRKAAMEIG--AGGGVDVREGQASAITEIWSKVEIKEGEAPSQSPALPGVAPMMRQGVGTRSLAAAVXXXXXXXXXXVSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------SIGGSRNSWSQQLDQLRTDDVIPTPLEIHSPDGGGDILSLSCLGSYLADVKLPSNLDGAGGDGTGQQDTFSATAAGEKRSGGGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQP-DPSKGTSTSSGEWSRRNRPPNTAPTPAXXXXXXXXXXDNGG-----DVKRHAPDSNQRLGRLNIVTGXXXXXXXXXXXXXXXXXXXXXXXXLLDAHAAALQHDMQALSIDDETSPGWSQLRTDVAGVPGPAFDGDALPMSLTSASDNVLGGAQGFPVPAAFK 952 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10048.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10048.60.1 >prot_E-fasciculatus_F_contig10048.60.1 ID=prot_E-fasciculatus_F_contig10048.60.1|Name=mRNA_E-fasciculatus_F_contig10048.60.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=531bp GGGGGERGREERDSAAMSMAKKCIEEEMETFRQFQQVMIAGGETKSVQQKback to top mRNA from alignment at E-fasciculatus_F_contig10048:21..4580+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10048.60.1 ID=mRNA_E-fasciculatus_F_contig10048.60.1|Name=mRNA_E-fasciculatus_F_contig10048.60.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10048:21..4580+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10048:21..4580+ >mRNA_E-fasciculatus_F_contig10048.60.1 ID=mRNA_E-fasciculatus_F_contig10048.60.1|Name=mRNA_E-fasciculatus_F_contig10048.60.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3186bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10048:21..4580+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |