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Homology
BLAST of mRNA_E-fasciculatus_F_contig10706.563.1 vs. uniprot
Match: D7FQ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ02_ECTSI) HSP 1 Score: 533 bits (1373), Expect = 1.060e-173 Identity = 334/421 (79.33%), Postives = 346/421 (82.19%), Query Frame = 1
Query: 880 QTRRGGTPGFRDNRQGNSGGXXXXXXXXXXRAXXXXXXXXXXXXXXXXXGPGLSAAVSVGSVGGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATPLGASAATSAAINGGTTAPDLGGGIGVGSVDGFSSALSSIPPLA--GXXXXXXXXSHGHVGGNNFDRSRSPRWGGRXXXXXXXXXRVATSISPRARPPLLRRDLDETAEEEEEDKVRARSSGSYHCVGTKTSRGRSGGRDRRDQXXXXXXXXTVDGTSYAFPMEASSSSPREGSGGVVGRGGERVFYSSSAGPAPRMRRSWKSLSPSPRTAAA-AKGGWPVAAGAVGSARRSYVQNAGVDELRDRLLAELEAKEELARELEDSRREXXXYXXXXXXXXXKVEELLEREADERRARGEAEAELEHLRASHR 2133
+T+ GGTPGFRDNR+GN XXXXXXXXXX XXXX GPGLSA VSVGSV GELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATPLGASAATSAAINGGTTAPDLGGGIGVGSVDGFSSALSSIPP A GXXXXXX SHG+VGGN FDRSRSPRWGGR RVATS+SPRARPPLLRRDLDETAEEEEE K ARSSGSYH GTK SRGR+GGRDRRD TVDG SYAFPMEA SSSPR+G G GRGG+R F SSSAGPAPRMRRSWKSLSPSPRTAAA AKGGWPVAAGA+GSARRSY+QNAGVDELRDRLLAELEAKEELARELEDSRRE + +VE LLEREADERRARGEAEAELE LR SHR
Sbjct: 8 RTQGGGTPGFRDNREGNXXXXXXXXXXXXXXXXXXXLSGGRGEEEGERDGPGLSARVSVGSVAGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSFGYATPLGASAATSAAINGGTTAPDLGGGIGVGSVDGFSSALSSIPPFASGGXXXXXXAGSHGYVGGNTFDRSRSPRWGGRRAGSGGGSGRVATSVSPRARPPLLRRDLDETAEEEEEYKAEARSSGSYHRGGTKISRGRTGGRDRRDGATAAAAAATVDGASYAFPMEALSSSPRQG-GRSAGRGGDRPFSSSSAGPAPRMRRSWKSLSPSPRTAAAPAKGGWPVAAGALGSARRSYIQNAGVDELRDRLLAELEAKEELARELEDSRREAEEHQERGEQREGEVEGLLEREADERRARGEAEAELEQLRVSHR 427
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2136 |
| Cds size | 1836 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10706.563.1 >prot_E-fasciculatus_F_contig10706.563.1 ID=prot_E-fasciculatus_F_contig10706.563.1|Name=mRNA_E-fasciculatus_F_contig10706.563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=612bp
MTGGDEGGSSALGALSRNWRSALVVNGLFDALEETERQRDELAHNLSRRD
QGPPLFDAATENITVDGGNGDAWLPPDRDRDSSGGEWEPRKRQPPLLRHS
LLGSSASPRSKSPPPRPPNPAIASATRTGRREEGNGGSGRRVLTSRESDK
RQHPTRRRPEARNGSDDDDDDDDDGLLYDTAAGAEQMPPPPPTQTRRGGT
PGFRDNRQGNSGGGGGGHAASSSRARGRARSGGRGEEERERDGPGLSAAV
SVGSVGGELRGGELERVRGRVADLGAAIETSQSKLLRELSQVQEDFFSSF
GYATPLGASAATSAAINGGTTAPDLGGGIGVGSVDGFSSALSSIPPLAGG
GGGGGGGSHGHVGGNNFDRSRSPRWGGRRAGSGGGSGRVATSISPRARPP
LLRRDLDETAEEEEEDKVRARSSGSYHCVGTKTSRGRSGGRDRRDQAAAA
AAAATVDGTSYAFPMEASSSSPREGSGGVVGRGGERVFYSSSAGPAPRMR
RSWKSLSPSPRTAAAAKGGWPVAAGAVGSARRSYVQNAGVDELRDRLLAE
LEAKEELARELEDSRREAEEYHERGEKREEKVEELLEREADERRARGEAE
AELEHLRASHR* back to topmRNA from alignment at E-fasciculatus_F_contig10706:836..4537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10706.563.1 ID=mRNA_E-fasciculatus_F_contig10706.563.1|Name=mRNA_E-fasciculatus_F_contig10706.563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10706:836..4537+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTACCGTTGGGCAAGGAGAAGGAGGTCCATCATCTAGCGGTGCCAAGACG
GCACCTCTATTAGCGTGCATGCATGCTAAGTGGGGTATGCGCAGGCTTCA
TCCGCGTTGAGCTCGTCACAAACCGATTCACACAACCGCGGGCGGGCTGC
GCGGTTGCATAAGTCCCGGGCTTGAAAAATTGAAAAATACAAACGACCGT
TTCATCGGGAATCAGGCAAAAGAGCAAAAGAGTACAAGAGACAAGGGCGG
GTCTCTCTCTCTCTCTCTCTTGTCCCTCTGCATGTGGAGGGTGCAAGGCC
ATGACTGGCGGGGACGAAGGGGGTTCTTCCGCCCTCGGAGCCTTGAGCCG
GAACTGGCGCTCGGCGCTAGTGGTGAATGGACTGTTCGACGCCCTGGAGG
AGACGGAGAGGCAACGCGACGAGCTGGCTCACAACTTGAGGTGTGTCATT
TTTCTTCTGTGTCCCTGCTGGTCTTCTTTCTCCCAGCCGAGAATCTCGTT
GCTCGTTGGAGAACGATGAAAGCTCTAGACCGCACCACCTCTCTCATGAG
GTAGCGGGCACCCGCACTATTGACAGTGTAGTTCCGTGTTGCGAGGGCCT
TACTAGACGGAAAGGTCATTCATTGGCCGTACCCGAGGAACCCAGCAGGC
CAGCGGACCAACACATGATAGATCTGACCTCATCCTGTGCCCGTATAATC
TCGCGCGAGGTGAATCCAGCATCGACCCGTTGTGCATTCGCCCTGTGTAT
GGGTTCTGACCCAGGTGGGATCCAGTTTTAGCCGGTGTATCCGCCCTGTT
CATCGCTTTGTTGCCCTCCTCTCCGCACACCGGCGCGCACTGCTAATGAG
TTGTACACATTTGCGTGTCGCACCTTTCCCCATCCTTCCCCTAGACGATG
ACTCTCTCCCTTCCCCGACCGTCCAACCAACCGTTGCGGGAGCAGTAGGC
GCGACCAAGGGCCACCGCTTTTCGATGCTGCCACCGAGAATATCACCGTC
GATGGCGGCAACGGCGACGCTTGGCTGCCACCCGACAGAGATAGAGATAG
CAGTGGTGGCGAATGGGAACCCAGAAAACGACAACCACCGCTGCTCCGGC
ACTCTCTCCTCGGGTCCTCTGCGTCGCCACGGTCGAAGTCACCGCCGCCG
CGGCCGCCGAACCCTGCCATTGCATCTGCGACGCGAACTGGCCGCCGAGA
GGAGGGCAATGGCGGCAGCGGCCGGCGTGTCCTCACAAGCAGGGAAAGCG
ATAAGCGGCAACACCCGACGAGGAGAAGACCGGAGGCGAGGAACGGCAGC
GACGACGACGACGACGACGACGACGACGGCCTCTTGTACGACACTGCGGC
GGGTGCCGAGCAGATGCCCCCGCCGCCGCCAACACAAACACGAAGAGGCG
GCACGCCTGGCTTTCGAGATAACCGACAAGGCAACAGCGGCGGCGGCGGC
GGTGGTCACGCCGCGAGTTCTTCGCGCGCGCGGGGGCGGGCGCGCTCGGG
AGGGCGGGGAGAGGAGGAAAGAGAGAGAGATGGCCCCGGTCTGTCGGCGG
CGGTGTCCGTGGGGTCGGTGGGTGGCGAGTTGAGGGGCGGGGAGCTGGAG
CGAGTGCGAGGGAGGGTGGCCGATCTCGGCGCGGCAATAGAGACGTCTCA
GGTGATGCTCCGTTTGATGAGATGAAAAACCCGGTACATACACAACAGCA
GTGCCTGCACTACATTCCGGTACAACACATCAGCGTAGCCCGCTCTCCCC
GCCCCCTACTCCACGTTGACTTCGTTAGTTGCAACGGTGATGGCGTACGT
TGGAGGGGCACCCCGGTGTACAGGCTCGACCTTGCCCTTAACGAGTGCAT
TTCCGACTGGCGGTTCATCTATCCGGACTTATTGTACCATGCTGCAACCC
GAAAACCCATGCCATCCTTTCATGGTCGGAATTGCAACCCTTCTCGCCCG
TGTATATCGTCGGAAATTCTGTAAGATTTTAGCCATTTTTTGTCTCCCGC
AATGAAAACTTCATTTTTTTTAACCAAAGCACCCCTTGAATCGCTTCAAA
TTCTTTTTGAAATCTGAAACAGTCCAAGCTCCTGCGAGAGCTTTCTCAAG
TGCAGGAAGACTTCTTCTCCAGCTTCGGCTACGCGACCCCACTCGGAGCC
AGCGCGGCGACGAGCGCAGCGATCAACGGCGGCACAACCGCACCCGACCT
CGGCGGCGGTATCGGTGTCGGCAGCGTTGACGGCTTCTCGTCCGCCCTTT
CGTCCATCCCTCCGCTCGCCGGCGGCGGCGGCGGCGGCGGCGGTGGCTCG
CACGGCCACGTCGGCGGCAACAACTTCGACCGGTCGCGCTCACCCCGCTG
GGGCGGGAGGAGGGCGGGAAGCGGCGGCGGGAGCGGAAGGGTAGCCACCT
CCATCTCCCCCCGCGCTCGGCCCCCGCTTCTGCGGCGTGATCTCGACGAG
ACAGCGGAAGAGGAAGAGGAGGACAAGGTTAGGGCCCGCAGCAGCGGCAG
TTACCACTGTGTGGGGACCAAGACTTCCAGGGGTAGAAGCGGAGGAAGGG
ATAGACGGGACCAGGCAGCGGCGGCAGCGGCAGCGGCGACGGTGGACGGT
ACTTCCTACGCGTTCCCGATGGAAGCGTCGTCGTCGTCGCCGCGGGAGGG
CAGCGGCGGGGTGGTGGGGCGAGGAGGAGAGAGGGTATTTTATTCGTCGT
CCGCTGGTCCTGCTCCAAGAATGAGGAGGAGCTGGAAGAGCTTGTCGCCT
TCTCCCCGCACCGCCGCCGCCGCGAAGGGTGGCTGGCCGGTGGCGGCCGG
AGCAGTCGGTAGTGCCAGGTGAGACACCGTGCCCGCAGGGGTTTGGGGGA
ACTGGCTTGGCTTGGCTTTGCCACGGCGTTCTACAAGCCTTGATTGCGCG
CTTGAGTTTCGGCAGCGAAATCTTGGTGTGGGCCGCATACAGATACGCTG
GATGTTGCGTCGTTTTATGTGTTATTTAGTCGTCAAAGAAAATGCTGTAG
TTTTCAGAATTCTGTGTTGAGTTGCTGCTGTTGCCTCAGCACGTGTGGCC
CTGGTACGAGTACACGCGGTTTTGACAAAATAATGGTATGGTAGACTAAT
TATTATTCTGTGCTGTTTGCCTACACGGAGTTTTCTCCTTCCTCCTGCCT
GTACTTCGCGTGCGTGAGACAGGCGCTCTTACGTTCAGAACGCCGGGGTA
GACGAGCTGAGGGATCGATTGCTAGCAGAGCTGGAGGCGAAGGAAGAGTT
GGCGAGGGTGAGAGCTGTGGGGCGTCGCTGCTTCGGATCAGAACCCCCCT
CCCCCCCCTCTTTCTTGTTGAGCTGGTTTGTTTTGCAACGAGTGCTGTGT
GCTGTGTGCGGTGTTTTGTCGTTTTTCTGCTGCTCGTCAGTTCTGTGATT
CACGGAGAAGACATCTGACAGCGGAGGAAGTAAGACCGACAGCTGCACAT
TTCTTCGATACGTTACACGAAGGCAGCGGTGAAGCAATGCCGTCACCATC
TCGCGTCGTGTCCACCCCCCTCCCCCAAAAAAAACAAAAAAAGGAGCTGG
AGGATTCCCGACGGGAGGCAGAGGAGTACCACGAGAGGGGGGAGAAACGT
GAGGAGAAGGTTGAGGAGTTGCTGGAGAGGGAGGCCGACGAACGACGCGC
CAGGGGCGAGGCCGAAGCGGAGCTCGAGCACCTCCGCGCATCGCACAGGT
AG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10706:836..4537+ >mRNA_E-fasciculatus_F_contig10706.563.1 ID=mRNA_E-fasciculatus_F_contig10706.563.1|Name=mRNA_E-fasciculatus_F_contig10706.563.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10706:836..4537+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGGCGGGGACGAAGGGGGTTCTTCCGCCCTCGGAGCCTTGAGCCG
GAACTGGCGCTCGGCGCTAGTGGTGAATGGACTGTTCGACGCCCTGGAGG
AGACGGAGAGGCAACGCGACGAGCTGGCTCACAACTTGAGATGACTGGCG
GGGACGAAGGGGGTTCTTCCGCCCTCGGAGCCTTGAGCCGGAACTGGCGC
TCGGCGCTAGTGGTGAATGGACTGTTCGACGCCCTGGAGGAGACGGAGAG
GCAACGCGACGAGCTGGCTCACAACTTGAGTAGGCGCGACCAAGGGCCAC
CGCTTTTCGATGCTGCCACCGAGAATATCACCGTCGATGGCGGCAACGGC
GACGCTTGGCTGCCACCCGACAGAGATAGAGATAGCAGTGGTGGCGAATG
GGAACCCAGAAAACGACAACCACCGCTGCTCCGGCACTCTCTCCTCGGGT
CCTCTGCGTCGCCACGGTCGAAGTCACCGCCGCCGCGGCCGCCGAACCCT
GCCATTGCATCTGCGACGCGAACTGGCCGCCGAGAGGAGGGCAATGGCGG
CAGCGGCCGGCGTGTCCTCACAAGCAGGGAAAGCGATAAGCGGCAACACC
CGACGAGGAGAAGACCGGAGGCGAGGAACGGCAGCGACGACGACGACGAC
GACGACGACGACGGCCTCTTGTACGACACTGCGGCGGGTGCCGAGCAGAT
GCCCCCGCCGCCGCCAACACAAACACGAAGAGGCGGCACGCCTGGCTTTC
GAGATAACCGACAAGGCAACAGCGGCGGCGGCGGCGGTGGTCACGCCGCG
AGTTCTTCGCGCGCGCGGGGGCGGGCGCGCTCGGGAGGGCGGGGAGAGGA
GGAAAGAGAGAGAGATGGCCCCGGTCTGTCGGCGGCGGTGTCCGTGGGGT
CGGTGGGTGGCGAGTTGAGGGGCGGGGAGCTGGAGCGAGTGCGAGGGAGG
GTGGCCGATCTCGGCGCGGCAATAGAGACGTCTCAGTAGGCGCGACCAAG
GGCCACCGCTTTTCGATGCTGCCACCGAGAATATCACCGTCGATGGCGGC
AACGGCGACGCTTGGCTGCCACCCGACAGAGATAGAGATAGCAGTGGTGG
CGAATGGGAACCCAGAAAACGACAACCACCGCTGCTCCGGCACTCTCTCC
TCGGGTCCTCTGCGTCGCCACGGTCGAAGTCACCGCCGCCGCGGCCGCCG
AACCCTGCCATTGCATCTGCGACGCGAACTGGCCGCCGAGAGGAGGGCAA
TGGCGGCAGCGGCCGGCGTGTCCTCACAAGCAGGGAAAGCGATAAGCGGC
AACACCCGACGAGGAGAAGACCGGAGGCGAGGAACGGCAGCGACGACGAC
GACGACGACGACGACGACGGCCTCTTGTACGACACTGCGGCGGGTGCCGA
GCAGATGCCCCCGCCGCCGCCAACACAAACACGAAGAGGCGGCACGCCTG
GCTTTCGAGATAACCGACAAGGCAACAGCGGCGGCGGCGGCGGTGGTCAC
GCCGCGAGTTCTTCGCGCGCGCGGGGGCGGGCGCGCTCGGGAGGGCGGGG
AGAGGAGGAAAGAGAGAGAGATGGCCCCGGTCTGTCGGCGGCGGTGTCCG
TGGGGTCGGTGGGTGGCGAGTTGAGGGGCGGGGAGCTGGAGCGAGTGCGA
GGGAGGGTGGCCGATCTCGGCGCGGCAATAGAGACGTCTCAGTCCAAGCT
CCTGCGAGAGCTTTCTCAAGTGCAGGAAGACTTCTTCTCCAGCTTCGGCT
ACGCGACCCCACTCGGAGCCAGCGCGGCGACGAGCGCAGCGATCAACGGC
GGCACAACCGCACCCGACCTCGGCGGCGGTATCGGTGTCGGCAGCGTTGA
CGGCTTCTCGTCCGCCCTTTCGTCCATCCCTCCGCTCGCCGGCGGCGGCG
GCGGCGGCGGCGGTGGCTCGCACGGCCACGTCGGCGGCAACAACTTCGAC
CGGTCGCGCTCACCCCGCTGGGGCGGGAGGAGGGCGGGAAGCGGCGGCGG
GAGCGGAAGGGTAGCCACCTCCATCTCCCCCCGCGCTCGGCCCCCGCTTC
TGCGGCGTGATCTCGACGAGACAGCGGAAGAGGAAGAGGAGGACAAGGTT
AGGGCCCGCAGCAGCGGCAGTTACCACTGTGTGGGGACCAAGACTTCCAG
GGGTAGAAGCGGAGGAAGGGATAGACGGGACCAGGCAGCGGCGGCAGCGG
CAGCGGCGACGGTGGACGGTACTTCCTACGCGTTCCCGATGGAAGCGTCG
TCGTCGTCGCCGCGGGAGGGCAGCGGCGGGGTGGTGGGGCGAGGAGGAGA
GAGGGTATTTTATTCGTCGTCCGCTGGTCCTGCTCCAAGAATGAGGAGGA
GCTGGAAGAGCTTGTCGCCTTCTCCCCGCACCGCCGCCGCCGCGAAGGGT
GGCTGGCCGGTGGCGGCCGGAGCAGTCGGTAGTGCCAGTCCAAGCTCCTG
CGAGAGCTTTCTCAAGTGCAGGAAGACTTCTTCTCCAGCTTCGGCTACGC
GACCCCACTCGGAGCCAGCGCGGCGACGAGCGCAGCGATCAACGGCGGCA
CAACCGCACCCGACCTCGGCGGCGGTATCGGTGTCGGCAGCGTTGACGGC
TTCTCGTCCGCCCTTTCGTCCATCCCTCCGCTCGCCGGCGGCGGCGGCGG
CGGCGGCGGTGGCTCGCACGGCCACGTCGGCGGCAACAACTTCGACCGGT
CGCGCTCACCCCGCTGGGGCGGGAGGAGGGCGGGAAGCGGCGGCGGGAGC
GGAAGGGTAGCCACCTCCATCTCCCCCCGCGCTCGGCCCCCGCTTCTGCG
GCGTGATCTCGACGAGACAGCGGAAGAGGAAGAGGAGGACAAGGTTAGGG
CCCGCAGCAGCGGCAGTTACCACTGTGTGGGGACCAAGACTTCCAGGGGT
AGAAGCGGAGGAAGGGATAGACGGGACCAGGCAGCGGCGGCAGCGGCAGC
GGCGACGGTGGACGGTACTTCCTACGCGTTCCCGATGGAAGCGTCGTCGT
CGTCGCCGCGGGAGGGCAGCGGCGGGGTGGTGGGGCGAGGAGGAGAGAGG
GTATTTTATTCGTCGTCCGCTGGTCCTGCTCCAAGAATGAGGAGGAGCTG
GAAGAGCTTGTCGCCTTCTCCCCGCACCGCCGCCGCCGCGAAGGGTGGCT
GGCCGGTGGCGGCCGGAGCAGTCGGTAGTGCCAGGCGCTCTTACGTTCAG
AACGCCGGGGTAGACGAGCTGAGGGATCGATTGCTAGCAGAGCTGGAGGC
GAAGGAAGAGTTGGCGAGGGCGCTCTTACGTTCAGAACGCCGGGGTAGAC
GAGCTGAGGGATCGATTGCTAGCAGAGCTGGAGGCGAAGGAAGAGTTGGC
GAGGGAGCTGGAGGATTCCCGACGGGAGGCAGAGGAGTACCACGAGAGGG
GGGAGAAACGTGAGGAGAAGGTTGAGGAGTTGCTGGAGAGGGAGGCCGAC
GAACGACGCGCCAGGGGCGAGGCCGAAGCGGAGCTCGAGCACCTCCGCGC
ATCGCACAGGTAGGAGCTGGAGGATTCCCGACGGGAGGCAGAGGAGTACC
ACGAGAGGGGGGAGAAACGTGAGGAGAAGGTTGAGGAGTTGCTGGAGAGG
GAGGCCGACGAACGACGCGCCAGGGGCGAGGCCGAAGCGGAGCTCGAGCA
CCTCCGCGCATCGCACAGGTAG back to top
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