mRNA_E-fasciculatus_F_contig10700.562.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10700.562.1
Unique NamemRNA_E-fasciculatus_F_contig10700.562.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10700.562.1 vs. uniprot
Match: A0A6H5KTQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.540e-23
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  919 RRLSIEASTTTKRPCPYYDEGRVANRNGSRNLSSGGSRCVDGSARGGSAVSSAVGRKRNDCSSVLGLPAISSEWDRERTKRAHQ 1170
            R LSI AS+T+K+ C Y+D+G+  +RNGS+NLSSGGSR +DGSARGGSAVSSAVG KRN CSS LGL A  S+WDRE TKR HQ
Sbjct:  341 RSLSILASSTSKKACLYHDQGQTLDRNGSKNLSSGGSRRIDGSARGGSAVSSAVGIKRNGCSSALGLSATWSDWDREGTKRTHQ 424
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10700.562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTQ3_9PHAE6.540e-2370.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10700contigE-fasciculatus_F_contig10700:1287..3138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1800
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10700.562.1prot_E-fasciculatus_F_contig10700.562.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10700 1812..2723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.1425796-UTR-E-fasciculatus_F_contig10700:1286..18111622927570.1425796-UTR-E-fasciculatus_F_contig10700:1286..1811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 1287..1811 -
1695995600.7605476-UTR-E-fasciculatus_F_contig10700:1286..18111695995600.7605476-UTR-E-fasciculatus_F_contig10700:1286..1811Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 1287..1811 -
1622927570.1638348-UTR-E-fasciculatus_F_contig10700:2723..27571622927570.1638348-UTR-E-fasciculatus_F_contig10700:2723..2757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 2724..2757 -
1695995600.788212-UTR-E-fasciculatus_F_contig10700:2723..27571695995600.788212-UTR-E-fasciculatus_F_contig10700:2723..2757Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 2724..2757 -
1622927570.1764834-UTR-E-fasciculatus_F_contig10700:2809..31381622927570.1764834-UTR-E-fasciculatus_F_contig10700:2809..3138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 2810..3138 -
1695995600.7982056-UTR-E-fasciculatus_F_contig10700:2809..31381695995600.7982056-UTR-E-fasciculatus_F_contig10700:2809..3138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10700 2810..3138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.153207-CDS-E-fasciculatus_F_contig10700:1811..27231622927570.153207-CDS-E-fasciculatus_F_contig10700:1811..2723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10700 1812..2723 -
1695995600.7767015-CDS-E-fasciculatus_F_contig10700:1811..27231695995600.7767015-CDS-E-fasciculatus_F_contig10700:1811..2723Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10700 1812..2723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10700.562.1

>prot_E-fasciculatus_F_contig10700.562.1 ID=prot_E-fasciculatus_F_contig10700.562.1|Name=mRNA_E-fasciculatus_F_contig10700.562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=304bp
MASGRPEFCSKHKEDGMLNIGQRKCAHSGCTKTPSYGVPGGRAEFCKAHA
KDGMMDVANKRCGHPGCTKQPCYGTIGSKKREFCKAHAKDGMVNLIHKAC
RHPGCTKVACFGVIGSKEVELCSEHKKDSMVDLSRKTCGHPGCTKRPSYG
PAGTNSRPEFCPGHKKTGMVDVLSKRCGQPACRKRRRLSIEASTTTKRPC
PYYDEGRVANRNGSRNLSSGGSRCVDGSARGGSAVSSAVGRKRNDCSSVL
GLPAISSEWDRERTKRAHQSTAGIPVAATQVKTEEEARTPWKRPRFRRQR
NFV*
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mRNA from alignment at E-fasciculatus_F_contig10700:1287..3138-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10700.562.1 ID=mRNA_E-fasciculatus_F_contig10700.562.1|Name=mRNA_E-fasciculatus_F_contig10700.562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10700:1287..3138- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATGGCATGGTGGATGTTGTACACAAGAGGTGCGGCTACCCAGGCTGCA
CAAAGGGTGCGATATATGGCGTGGTCGGTAGTAAGAAGAGAGAGTTCTGC
AAGGCACACGCGAAGGATGGAATGATGGACCTCATTAACAAGGCTTGTCG
CCACCCAGGCTGCACCAAGGCGGCGCGCTTTGGCGTGATCGATAGCAAGC
GGGTGGAGTTCTGCTCGGAGCACAAGAAGGACGGCATGGTCGACCTCCCC
CGCAAGACATGCGGCCACCCAGGCTGCACGAAACGGGCCGCGTATGGTCC
GGCCGGCACAAACAGTAGGCCAGAGTTCTGCTCCGGACACAAGAGGGATG
GCATGGTCGACGTCCTCAGCAAGCGGTGTAGCCACCCAGGCTGCACCACA
ACGCCGTCCTTTGGCATGGCCAGCGGCAGGCCAGAATTCTGCTCGAAACA
CAAAGAGGACGGAATGCTGAACATCGGCCAAAGGAAGTGCGCTCACTCAG
GCTGCACCAAGACGCCGAGTTATGGAGTCCCCGGTGGCCGCGCAGAGTTC
TGTAAGGCACACGCGAAGGACGGCATGATGGACGTGGCGAACAAGAGGTG
CGGCCACCCAGGCTGCACGAAGCAGCCCTGCTATGGTACGATCGGTAGCA
AGAAGAGAGAGTTCTGCAAGGCGCACGCGAAGGATGGAATGGTGAACCTC
ATTCACAAGGCATGCCGTCACCCAGGCTGCACCAAGGTGGCGTGCTTTGG
CGTGATCGGTAGCAAGGAGGTGGAACTCTGCTCGGAGCACAAGAAGGACA
GCATGGTCGACCTCTCCCGCAAGACATGCGGCCACCCAGGCTGCACAAAG
CGGCCCTCGTATGGTCCAGCCGGCACCAACAGTAGGCCAGAGTTCTGCCC
CGGACACAAAAAGACCGGGATGGTAGACGTCCTCAGCAAGCGGTGTGGTC
AACCAGCCTGCCGTAAACGGCGTCGCCTCAGCATTGAAGCCTCTACTACT
ACCAAGAGACCTTGCCCCTATTACGACGAGGGTCGCGTGGCTAACCGCAA
TGGAAGCAGGAATCTGTCCAGCGGTGGCAGCAGGTGTGTCGACGGGTCCG
CGCGAGGAGGTTCAGCTGTGTCATCGGCTGTCGGCAGAAAGCGGAATGAC
TGCTCTAGTGTACTCGGGCTCCCGGCGATATCGTCGGAGTGGGATAGGGA
GAGGACAAAGCGAGCCCACCAGTCTACCGCCGGCATACCTGTTGCTGCGA
CCCAAGTGAAAACAGAAGAAGAGGCCCGCACCCCCTGGAAGAGGCCACGT
TTTCGGCGCCAAAGGAACTTTGTGTGAAGGTCAAGAGTCGATTTTACACC
GCTCTCTCTTCCATATTGTTTGGATAACCAACTCGTGTGTCGTCAACATT
GCAATTGTTTCGAAGACGTTGGGAGCATTTGGTACGGTGTTTTTTTATTT
TTTATTTTTATTTCAAATGGGCACACCATATTGTGTGTTTGGCAAGTTTC
TTTGGAGACTAGCGGGGGGAAGCGACTGTGGGGTGCGGCACTTTCTAGAA
CGAACGTGGCCGAGCTTCTCGAGTTTTTTATGGGATTTGAGTTCAAGGAT
CTGAACGGTAGTTCTAGGCCAGATATTTAGATCTGGCGGGAAGTGCAACC
CCCTAGGATCGTTGTTAAACAGGGGATATTGCCGTAGCGGCCCATCCCTG
CGTGCTGCGGTGTCAAGAGATAATCAAGAGAACCAGAAACATGTATGTCT
ACAAGTGAGGCATCTTCAGGGCCTTAAGGGATTGCTACGCGTGTGAACCT
CACAACATTTGGCGTGTCGGCAGTAAGGAATTTGGCTTTCTTTGGCCTCG
TC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10700:1287..3138-

>mRNA_E-fasciculatus_F_contig10700.562.1 ID=mRNA_E-fasciculatus_F_contig10700.562.1|Name=mRNA_E-fasciculatus_F_contig10700.562.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10700:1287..3138- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCAGCGGCAGGCCAGAATTCTGCTCGAAACACAAAGAGGACGGAAT
GCTGAACATCGGCCAAAGGAAGTGCGCTCACTCAGGCTGCACCAAGACGC
CGAGTTATGGAGTCCCCGGTGGCCGCGCAGAGTTCTGTAAGGCACACGCG
AAGGACGGCATGATGGACGTGGCGAACAAGAGGTGCGGCCACCCAGGCTG
CACGAAGCAGCCCTGCTATGGTACGATCGGTAGCAAGAAGAGAGAGTTCT
GCAAGGCGCACGCGAAGGATGGAATGGTGAACCTCATTCACAAGGCATGC
CGTCACCCAGGCTGCACCAAGGTGGCGTGCTTTGGCGTGATCGGTAGCAA
GGAGGTGGAACTCTGCTCGGAGCACAAGAAGGACAGCATGGTCGACCTCT
CCCGCAAGACATGCGGCCACCCAGGCTGCACAAAGCGGCCCTCGTATGGT
CCAGCCGGCACCAACAGTAGGCCAGAGTTCTGCCCCGGACACAAAAAGAC
CGGGATGGTAGACGTCCTCAGCAAGCGGTGTGGTCAACCAGCCTGCCGTA
AACGGCGTCGCCTCAGCATTGAAGCCTCTACTACTACCAAGAGACCTTGC
CCCTATTACGACGAGGGTCGCGTGGCTAACCGCAATGGAAGCAGGAATCT
GTCCAGCGGTGGCAGCAGGTGTGTCGACGGGTCCGCGCGAGGAGGTTCAG
CTGTGTCATCGGCTGTCGGCAGAAAGCGGAATGACTGCTCTAGTGTACTC
GGGCTCCCGGCGATATCGTCGGAGTGGGATAGGGAGAGGACAAAGCGAGC
CCACCAGTCTACCGCCGGCATACCTGTTGCTGCGACCCAAGTGAAAACAG
AAGAAGAGGCCCGCACCCCCTGGAAGAGGCCACGTTTTCGGCGCCAAAGG
AACTTTGTGTGAATGGCCAGCGGCAGGCCAGAATTCTGCTCGAAACACAA
AGAGGACGGAATGCTGAACATCGGCCAAAGGAAGTGCGCTCACTCAGGCT
GCACCAAGACGCCGAGTTATGGAGTCCCCGGTGGCCGCGCAGAGTTCTGT
AAGGCACACGCGAAGGACGGCATGATGGACGTGGCGAACAAGAGGTGCGG
CCACCCAGGCTGCACGAAGCAGCCCTGCTATGGTACGATCGGTAGCAAGA
AGAGAGAGTTCTGCAAGGCGCACGCGAAGGATGGAATGGTGAACCTCATT
CACAAGGCATGCCGTCACCCAGGCTGCACCAAGGTGGCGTGCTTTGGCGT
GATCGGTAGCAAGGAGGTGGAACTCTGCTCGGAGCACAAGAAGGACAGCA
TGGTCGACCTCTCCCGCAAGACATGCGGCCACCCAGGCTGCACAAAGCGG
CCCTCGTATGGTCCAGCCGGCACCAACAGTAGGCCAGAGTTCTGCCCCGG
ACACAAAAAGACCGGGATGGTAGACGTCCTCAGCAAGCGGTGTGGTCAAC
CAGCCTGCCGTAAACGGCGTCGCCTCAGCATTGAAGCCTCTACTACTACC
AAGAGACCTTGCCCCTATTACGACGAGGGTCGCGTGGCTAACCGCAATGG
AAGCAGGAATCTGTCCAGCGGTGGCAGCAGGTGTGTCGACGGGTCCGCGC
GAGGAGGTTCAGCTGTGTCATCGGCTGTCGGCAGAAAGCGGAATGACTGC
TCTAGTGTACTCGGGCTCCCGGCGATATCGTCGGAGTGGGATAGGGAGAG
GACAAAGCGAGCCCACCAGTCTACCGCCGGCATACCTGTTGCTGCGACCC
AAGTGAAAACAGAAGAAGAGGCCCGCACCCCCTGGAAGAGGCCACGTTTT
CGGCGCCAAAGGAACTTTGTGTGA
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