mRNA_E-fasciculatus_F_contig1070.561.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1070.561.1
Unique NamemRNA_E-fasciculatus_F_contig1070.561.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.160e-126
Identity = 180/186 (96.77%), Postives = 181/186 (97.31%), Query Frame = 1
Query:  124 MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEPSAVVTPK 681
            MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYR    +ESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSV TEDAVNFYETFEPSAVVTPK
Sbjct:    1 MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYR-IEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAVVTPK 185          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.270e-42
Identity = 75/199 (37.69%), Postives = 114/199 (57.29%), Query Frame = 1
Query:  103 DIGRMTAMAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGV-------------QESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVS--VLHESTPSVRTEDAVNFYETF 654
            D  R+       +E YVKT   + V +KA +HG  N+ + G+SI+ P V IRG+ Q +RIGRYC +GEG+++RP   QA +             +E     +F PL VGSHT IGK CV+E+A +G +V I D CV+ +   ++D C++  GTV+ +  V+PPF+ + GCP  M+   ++ ES  +   +D V  +  F
Sbjct:   32 DPSRLVVEVAPEEEGYVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEF 230          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.800e-40
Identity = 73/176 (41.48%), Postives = 112/176 (63.64%), Query Frame = 1
Query:  139 QEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEPSA 666
            +EE+++T   ++V KK  +   + + + G++I+M GVIIRG+L ++ +GRYC VG  T+IRPA +   + E      F  + +G +T IG+ C++E+A IG NV+     VLG+ S VRD C L  GTVL  GAVVPPF+V+ GCP R+ S L E++P   +  A + Y+ F+ +A
Sbjct:    9 KEEFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALK---ISEEPT---FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFKETA 178          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A7S1ZJQ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJQ9_TRICV)

HSP 1 Score: 144 bits (364), Expect = 8.650e-40
Identity = 70/174 (40.23%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  136 AQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGEL-QEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETF 654
            A+E Y+KT   + V + A +HG  ++ + G+S++ PG ++RG+L   +R+GRYC VG+ +V+RP    A + +     R  P S+G+HT IG+ CVVE+A +G +V + DGCVLG+ S ++D C + PGTVL   AVVPPF+++ G P R+V  + ES  +   + ++  Y  F
Sbjct:   17 AEEGYIKTAANNYVSRSASIHGSRHVEIRGKSVVRPGAVVRGDLGAPVRVGRYCRVGDRSVLRPP--SASLPDGTE--RRLPQSIGNHTSIGRDCVVEAAAVGFSVLVGDGCVLGKRSVIKDCCRIEPGTVLAPDAVVPPFSIVSGSPGRVVGEMPESAAAEIPDRSLGEYAAF 186          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB)

HSP 1 Score: 140 bits (353), Expect = 2.440e-38
Identity = 68/174 (39.08%), Postives = 108/174 (62.07%), Query Frame = 1
Query:  142 EEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEPS 663
            EE+++T  G+ V + + + G  N+ L G+S+++PG IIRG+L  +RIGRYCV+ +  V+RPAY+            +  LS+G   Y+GK  VVE+A IG +V I +G ++ + + + D C +LPG V+PE AV+PPF++  G PA ++  L E+   V  E A   YE++ P+
Sbjct:    9 EEWIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKALPKG-----LNYFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVPA 177          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A0N4UAM7_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UAM7_DRAME)

HSP 1 Score: 139 bits (351), Expect = 5.640e-38
Identity = 65/172 (37.79%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  139 QEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETF 654
            ++E+V+T  G+ V KK+ + G  N+ L G+SI+M   I+RG++  IR G+YCVVGE TVIRP+Y++      +    F P+ +G H +I   C++ +A IG  V I  G ++GR+  ++D   +LP   +P  AV+PPF+++ G P  ++  L EST ++ T+   +FY+ F
Sbjct:   10 KQEFVETATGNKVNKKSRLFGSQNIVLNGKSILMKDCILRGDMNSIRAGKYCVVGERTVIRPSYKRF-----SKGLTFFPVHIGDHVFIENDCIIMAAQIGAFVHIGSGAIVGRSVIIKDCVQVLPNAFVPHDAVIPPFSIVSGNPGTIIGELPESTQNLMTQATRSFYDNF 176          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A3S1H5M8_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1H5M8_ELYCH)

HSP 1 Score: 135 bits (339), Expect = 3.190e-36
Identity = 63/172 (36.63%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  145 EYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEP 660
            +Y++T  G+ V +++ + G  N+ + G++I+M G +IRG+L  +RIGR+C++    VIRPA+++     +     F PL +G H  I ++ VV +A +G  V I   CV+GR + ++D C +   T+LP  AVVPPFT+  G P ++ S L + T  + T+  VN+Y  F P
Sbjct:   12 QYIETASGNKVSRQSVLCGSQNIVINGKTIVMTGCVIRGDLANVRIGRHCIISNNAVIRPAFKRFSKGVA-----FFPLHIGDHVLIEENSVVNAAQVGSFVHIGKNCVIGRRAVLKDCCAIADNTILPPEAVVPPFTLCSGSPGKLTSELPDCTQDLMTDITVNYYHHFRP 178          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A0K0JQM9_BRUMA (BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 RepID=A0A0K0JQM9_BRUMA)

HSP 1 Score: 133 bits (334), Expect = 1.790e-35
Identity = 65/176 (36.93%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  139 QEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEPSA 666
            + EYV+T  G+ V +K+ + G  N+ L G+S +M   I+RG++  IR GRYCVVGE T+IRP+Y++      +    F P+ +G H +IG  C+V +A IG  V          +  ++    +LP TV+P  AV+PPF+++ G P  ++  L EST  + T+   NFY+ F P +
Sbjct:    6 KSEYVETATGNKVNRKSRLFGSQNIVLNGKSTLMKDCILRGDMHNIRTGRYCVVGERTIIRPSYKRF-----SKGLTFFPVHIGDHVFIGNDCIVMAAEIGAFVHXXXXXXXXXSVIIKSCVQVLPNTVVPHDAVIPPFSIVGGNPGTVIGHLPESTQELMTQATRNFYDNFVPDS 176          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE)

HSP 1 Score: 129 bits (325), Expect = 4.120e-34
Identity = 65/172 (37.79%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  151 VKTRDGDIVFKKA-HVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEPS 663
            V+T  G+ V ++  H+ G  N+ L G+SIIM G I+RG+L  +RIG+YCV+GE ++IRP+++       +    + P+ +G + +I   CVV +A IG  V I    ++GR++ ++D   +LP  V+P+ AV+PPF+++ G PA +V  L  ST  +  +   +FYE F PS
Sbjct:   14 VETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFKAF-----SKGLTYFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVPS 180          
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Match: A0A0D6ELH2_SPOSA (SPOSA6832_02372-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ELH2_SPOSA)

HSP 1 Score: 129 bits (325), Expect = 5.460e-34
Identity = 72/196 (36.73%), Postives = 106/196 (54.08%), Query Frame = 1
Query:  118 TAMAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQE--------------IRIGRYCVVGEGTVIRPAYRQ-AGVQESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVRTEDAVNFYETFEP 660
            TA + S++  Y+ T  G+IV + + + G  N+ L G+SI+ PG IIRG+L+               + +G+YCVVGEGTV+RP Y+   GV        + P+ +G +  IG   VVE+A IG  V I  GC++G  + ++D   +  G V+  G +VP  T   G PAR  + L ESTP +    A  FY  F+P
Sbjct:    4 TAPSASSKSSYIHTDTGNIVSRASTITGSQNIVLGGKSILQPGCIIRGDLRRSGATSAGXXXXXVVVAMGKYCVVGEGTVLRPCYKTYKGVFS------YYPMKIGDYVSIGPGSVVEAASIGTGVEIGKGCIVGPLAILKDYSRIADGAVVGAGTIVPSLTEWSGSPARPTAQLPESTPELVEAKAKAFYSRFQP 193          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1070.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ0_ECTSI1.160e-12696.77Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S3QBQ9_9STRA1.270e-4237.69Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2V2Q0_9STRA6.800e-4041.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZJQ9_TRICV8.650e-4040.23Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0L0DIQ2_THETB2.440e-3839.08Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC... [more]
A0A0N4UAM7_DRAME5.640e-3837.79Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A3S1H5M8_ELYCH3.190e-3636.63Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A0K0JQM9_BRUMA1.790e-3536.93BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 Rep... [more]
A0A0N4UWP5_ENTVE4.120e-3437.79Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A0D6ELH2_SPOSA5.460e-3436.73SPOSA6832_02372-mRNA-1:cds n=1 Tax=Sporidiobolus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1070contigE-fasciculatus_F_contig1070:15349..18483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue2.5e-98
Seed eggNOG ortholog2880.D7FIJ0
Preferred nameDCTN5
KEGG koko:K10427
KEGG Pathwayko04962,map04962
GOsGO:0000003,GO:0001568,GO:0001944,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005886,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022414,GO:0030705,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035904,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060840,GO:0060976,GO:0070013,GO:0071944,GO:0072358,GO:0072359,GO:0098930,GO:0099111
EggNOG free text desc.aorta development
EggNOG OGsKOG3121@1,KOG3121@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-28_000450.1
Exons6
Model size684
Cds size570
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.022898-CDS-E-fasciculatus_F_contig1070:15348..154711622927570.022898-CDS-E-fasciculatus_F_contig1070:15348..15471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 15349..15471 -
1695995600.6912525-CDS-E-fasciculatus_F_contig1070:15348..154711695995600.6912525-CDS-E-fasciculatus_F_contig1070:15348..15471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 15349..15471 -
1622927570.03872-CDS-E-fasciculatus_F_contig1070:15707..157941622927570.03872-CDS-E-fasciculatus_F_contig1070:15707..15794Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 15708..15794 -
1695995600.7020135-CDS-E-fasciculatus_F_contig1070:15707..157941695995600.7020135-CDS-E-fasciculatus_F_contig1070:15707..15794Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 15708..15794 -
1622927570.0495958-CDS-E-fasciculatus_F_contig1070:16321..164491622927570.0495958-CDS-E-fasciculatus_F_contig1070:16321..16449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 16322..16449 -
1695995600.7111037-CDS-E-fasciculatus_F_contig1070:16321..164491695995600.7111037-CDS-E-fasciculatus_F_contig1070:16321..16449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 16322..16449 -
1622927570.0612323-CDS-E-fasciculatus_F_contig1070:16954..170721622927570.0612323-CDS-E-fasciculatus_F_contig1070:16954..17072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 16955..17072 -
1695995600.7227118-CDS-E-fasciculatus_F_contig1070:16954..170721695995600.7227118-CDS-E-fasciculatus_F_contig1070:16954..17072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 16955..17072 -
1622927570.0732577-CDS-E-fasciculatus_F_contig1070:17440..175541622927570.0732577-CDS-E-fasciculatus_F_contig1070:17440..17554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 17441..17554 -
1695995600.7318034-CDS-E-fasciculatus_F_contig1070:17440..175541695995600.7318034-CDS-E-fasciculatus_F_contig1070:17440..17554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1070 17441..17554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.0872834-UTR-E-fasciculatus_F_contig1070:17554..175801622927570.0872834-UTR-E-fasciculatus_F_contig1070:17554..17580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1070 17555..17580 -
1695995600.742515-UTR-E-fasciculatus_F_contig1070:17554..175801695995600.742515-UTR-E-fasciculatus_F_contig1070:17554..17580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1070 17555..17580 -
1622927570.1023605-UTR-E-fasciculatus_F_contig1070:18395..184831622927570.1023605-UTR-E-fasciculatus_F_contig1070:18395..18483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1070 18396..18483 -
1695995600.7512622-UTR-E-fasciculatus_F_contig1070:18395..184831695995600.7512622-UTR-E-fasciculatus_F_contig1070:18395..18483Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1070 18396..18483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1070.561.1prot_E-fasciculatus_F_contig1070.561.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1070 15349..17554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1070.561.1

>prot_E-fasciculatus_F_contig1070.561.1 ID=prot_E-fasciculatus_F_contig1070.561.1|Name=mRNA_E-fasciculatus_F_contig1070.561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
MTAMAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGE
LQEIRIGRYCVVGEGTVIRPAYRQAGVQESNLKCRFTPLSVGSHTYIGKS
CVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVL
QGCPARMVSVLHESTPSVRTEDAVNFYETFEPSAVVTPK*
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mRNA from alignment at E-fasciculatus_F_contig1070:15349..18483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1070.561.1 ID=mRNA_E-fasciculatus_F_contig1070.561.1|Name=mRNA_E-fasciculatus_F_contig1070.561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3135bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1070:15349..18483- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTCTTGGGCACTCGCAAGCCCGTCCGCGCGGCTTTCCAGGGACGCGAGA CGGTCCTCGAGCTCAGCCATAGTCGACATGGTGATGAGGTCGGGTGGGGA AGAGAGTCCACACGCTAAAAAATCGAACGAAGTTGGGCCCCGCGCGGAGG TAGTAGATGGTTGGTGTGGCGGGGGGCGCGTTATCGGCCCGCCCGCCCGA CCTCGGTCCTTACGGAGAGGCTGAGAGGGCTTGGGGGGCTTTCCCCCTCT CGCACCCTTGTTGTAGAGAAAGAGCGGGAAAGGGTTGGTGCGTGGGTCAA AGTCAACTACCGGGTTGCTGGTGTGTCTGTCTGTCGTCAGCAGATCTGCA GATATTTGACAGAACAGAGAACAGGCTTCCTTGTCCTTTCTACCATGCAT GGAGAACGGAATGCCCGACACGTGCAATTTCGTTGGTCTCTTGGGGGGGG GTACATAATTCATTTTTTTTGTTGCTTGTTTGACAGAGATACAATCAACA ATTGAATTGATTGTACAGTAGTTAGCGTTTGGCGGACGAACTACCTGTGT TTCTAAGCGTTCGCGGACAACACGACTTGTGTTTTCTACGATTCCTCAAG CTGCATACAGCGAAGGTCTCCTCTGTTCCATTGTCTGTGGCTTGGGGGGG GGGCGCGAGGCTCGGCGGGCTTTGAATTTTGAATCGCGAATGATTTGCCC CGGATTGTGCCGTCGACCGAGCTGGCAAGAAAAGGTTTAGAAAAGTTCTT GAGGCGTACTCCTGTTGGTTCTCTCGCCACTCGCCCCGCTCGCCGCCTCC TCCGCTCCGCTTGTCTTGTCTTGCTGTTCCCTTCTCTCTCTCGCTCACCT GCTGTATTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTTACGCACATATAT CAGAGCCGTGCGTTGCTGATATAGGAAGGATGACGGCTATGGCGGGATCT GCGCAAGAAGAGTACGTGAAGACCCGCGATGGCGACATTGTCTTCAAGAA AGCTCACGTTCACGGCCTGCACAATCTTTTTCTCATGGGAAGGGTAAGAG ATCAACTTGATTCGATGCGACGTTCGCATACACACCTCGTCCCCACACAG GCGTTCGCTATGCATGTACCATGAACGGTAGCTGGTAGTCTACTTGTAGA TTGGTGTCCCCCCCTCCACATCAACAGCAGTTTAGGCCCGCAATGTTGCC CCCCAACCGGCTGGATCTCGGTCTGCACTTGTATAAGCTACGCGTACCCA TCAAGGTTGAGTGCATTGGTCGCTCAAACACCCACGAAAGTGTGGCTGCC GCGCATAGCCCCCCTGTTGAGTGTAGTCTAGGTGTTTAATCGCGGGCGGT CTTGTTCCCAATTCGATTTTGTCTGCGTGGACGAAATATCATCTGCTCGT CTCGTCATCAGAGCATTATCATGCCAGGGGTAATCATCCGCGGAGAACTA CAGGAGATCCGAATAGGTCGGTACTGCGTCGTTGGCGAAGGCACCGTCAT CCGACCAGCTTACAGGCAAGCAGGAGTGCGTGTACCCTGACTCGCTACTG CTGTAATAAGTAGCGCTTTTCGATGGAGGACCTGTTCCAAAAAGGGTGGC GACTTGATCACGTTTCGTTCGGTTTGCACAGCACAATGCGCCGCCAGCAA GTCAGCTGCTCCCCGTGAGGGTAGCTTGATCTACCGCTGTCTAGCGTGGG CCCGTCATGGTCCTGTGATCAGTACGATGCGCTTGCCAGTTCAGTACCCT GAACCATTTACAATGGGTTGCTAGATTCCTTTCCAACAGCACGGGCTGGG TTGGAAGGCCGGCATGCCTCTGTGATCGTGTTGGGTGTTGGCGCTTGCTT GCTTTCACCAACCGTGCATTCGAGCTACGTGATCCCGTGCACATTTGCGT CGTTTTGTTGACTGTTGGCGCTCGGTGTGTGTTCCTCCGTCCGGTCGAGA ACTTCAACCCGCTCGTACCTTTATTCTCCGATGACTGCCAACCAAAAAAC GTGTTGGTTCTTCTTGCCGACAGGATTGAACAAGAGGAGTCTAACCTCAA GTGTCGCTTCACCCCGCTATCCGTGGGTAGCCACACGTATATCGGCAAGT CCTGCGTCGTAGAATCGGCTGGCATTGGGTGCAACGTGCGAATCGAGGAT GGATGCGTTTTGGTGAGGGTAGAGCGTCGGCGTTGCCCCTTTCCTTTAGG AAGTGCAACCTTACTGTTTAGTCCAAAGCTTGAAACGTGCTGCTTGCTGC AATGCCAGTTTTGATGGATCGAAGCCACGGGACTGCTGCTGACAAGAGTC AGAACCGGCACGAATTTGGCCGGGTTTTGCGCAGCACGTGCTTGCAGACA AGATCTTGTGGGTATATGGGGTGTTGGTCCCGTGTGTTTATGCAGGCGGT GCTGTTTTTATGGCAGGTCGAGGTGGTATCATGCACGATTAACTTGCTTG ACGCACACGGTTCTGTCATGTTCCCGACGCTCGGGCGCTTCCCGGAAAAC TCGGTCCGAGAGATATTTGTGGTCCCTGTTCGCCCCTTGTCCGACTAGTC TAGGCAACAGCAGACAGGTGGAATTTATTTTCTTGGCTACAGCACACAGC AGTGCTGCAGTACGGGTGCATGGCCGAGGCGGTGCTCTCCTAACATCATG TTTCGCGCCGCTCTGCCTTTGCCCGTGCCGTTTCGGCAGGGACGGAATAG TTTTGTTCGGGACAACTGCCATCTGTTGCCGGGGACGGTTCTTCCTGAAG GGGCCGTGGTCCCCCCCTTTACTGTGGTGAGAGAAGTTACAGCATTCCCC GGCTATTCTTCATTTTGTGGACGTGATCCTCTGTCCCACACCTCAACCAC GGCCCCACACATCCCTCGCTTTCCTCCACGCCGGTCCTTTCATGGCACGC CCCCACACGCCTATGCATGCACGCTCTTGCTGTTCAGGCCCAAATGTTCC TCTCCTCGTTGCGCACCTCTCGCCCTCGTCCTTTGTGCGTCGGTCTACCC CATTTTCCCCAGCTCCAGGGCTGCCCGGCGAGGATGGTGTCAGTGCTACA TGAGAGCACGCCGTCGGTGCGGACGGAGGACGCCGTGAACTTCTACGAAA CTTTCGAGCCGAGCGCTGTTGTAACACCCAAATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1070:15349..18483-

>mRNA_E-fasciculatus_F_contig1070.561.1 ID=mRNA_E-fasciculatus_F_contig1070.561.1|Name=mRNA_E-fasciculatus_F_contig1070.561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1070:15349..18483- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGGCTATGGCGGGATCTGCGCAAGAAGAGTACGTGAAGACCCGCGA
TGGCGACATTGTCTTCAAGAAAGCTCACGTTCACGGCCTGCACAATCTTT
TTCTCATGGGAAGGATGACGGCTATGGCGGGATCTGCGCAAGAAGAGTAC
GTGAAGACCCGCGATGGCGACATTGTCTTCAAGAAAGCTCACGTTCACGG
CCTGCACAATCTTTTTCTCATGGGAAGGAGCATTATCATGCCAGGGGTAA
TCATCCGCGGAGAACTACAGGAGATCCGAATAGGTCGGTACTGCGTCGTT
GGCGAAGGCACCGTCATCCGACCAGCTTACAGGCAAGCAGGAGTGCAGCA
TTATCATGCCAGGGGTAATCATCCGCGGAGAACTACAGGAGATCCGAATA
GGTCGGTACTGCGTCGTTGGCGAAGGCACCGTCATCCGACCAGCTTACAG
GCAAGCAGGAGTGCAGGAGTCTAACCTCAAGTGTCGCTTCACCCCGCTAT
CCGTGGGTAGCCACACGTATATCGGCAAGTCCTGCGTCGTAGAATCGGCT
GGCATTGGGTGCAACGTGCGAATCGAGGATGGATGCGTTTTGAGGAGTCT
AACCTCAAGTGTCGCTTCACCCCGCTATCCGTGGGTAGCCACACGTATAT
CGGCAAGTCCTGCGTCGTAGAATCGGCTGGCATTGGGTGCAACGTGCGAA
TCGAGGATGGATGCGTTTTGGGACGGAATAGTTTTGTTCGGGACAACTGC
CATCTGTTGCCGGGGACGGTTCTTCCTGAAGGGGCCGTGGTCCCCCCCTT
TACTGTGGGACGGAATAGTTTTGTTCGGGACAACTGCCATCTGTTGCCGG
GGACGGTTCTTCCTGAAGGGGCCGTGGTCCCCCCCTTTACTGTGCTCCAG
GGCTGCCCGGCGAGGATGGTGTCAGTGCTACATGAGAGCACGCCGTCGGT
GCGGACGGAGGACGCCGTGAACTTCTACGAAACTTTCGAGCCGAGCGCTG
TTGTAACACCCAAATGACTCCAGGGCTGCCCGGCGAGGATGGTGTCAGTG
CTACATGAGAGCACGCCGTCGGTGCGGACGGAGGACGCCGTGAACTTCTA
CGAAACTTTCGAGCCGAGCGCTGTTGTAACACCCAAATGA
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