mRNA_E-fasciculatus_F_contig10699.552.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10699.552.1
Unique NamemRNA_E-fasciculatus_F_contig10699.552.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.950e-26
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MEEPIYLVDGTALHVTG--AAGSIDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSCTGGG 288
            +E   Y+VDGT L +TG  ++ +IDG  +TRLFTVVNATLHLTG++VTSGAS  GG IAAAG+ LTLN+TNF+ N A+G+GGA+Y S+GS + C+GGG
Sbjct:  184 VESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTVVNATLHLTGVDVTSGASTTGGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMVCSGGG 281          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.330e-25
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 MEEPIYLVDGTALHVTGAAGS--IDGGWSTRLFTVVNATLHLTGLNVTSGAS-AAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSCTG 282
            +E PIY+ DGT + VTG   +  IDG  +TRLFTVV+A+LHL  +N++ GAS A GGGIAAAGS +TLN T+ VGNRA+GHGGAVYASNGS VSC G
Sbjct:   79 VESPIYVRDGTIVTVTGVGSTAVIDGHAATRLFTVVDASLHLRNVNISYGASRAVGGGIAAAGSRVTLNHTSIVGNRATGHGGAVYASNGSTVSCLG 175          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.970e-25
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    1 MEEPIYLVDGTALHVTGAAGS---IDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSC 276
            + E I++ DGT L +TGAAGS   +DG   TRLFTVVNA LH++G+N++ GAS +GG IAA GS LT N+TNF+GN ASG+GGAV+ S+GS VSC
Sbjct:  257 VNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTVVNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVSDGSLVSC 351          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.200e-22
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    7 EPIYLVDGTALHVTG--AAGSIDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSCTGGGGGTFADN 309
            +PIY+  GT L +TG  A+  IDG   TRLFTV NA LHL+ LN+++GAS  GG IAAA S LT N TNFVGN+A+ +GG VY  +GS VSC GGG  T ADN
Sbjct:  321 DPIYIGGGTVLTITGDGASSVIDGNTLTRLFTVNNAVLHLSNLNISNGASIVGGAIAAANSSLTFNGTNFVGNQATRYGGGVYVIDGSDVSCVGGG--TLADN 421          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.870e-21
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    7 EPIYLVDGTALHVTGAAGS--IDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSC 276
            +P Y+VDGT L ++GA  S  ++G  STR+FTVVNA L+L+ +NV+ G+S  GG IAAA S LTLN TNFVGN AS +GGA+Y S+GS V C
Sbjct:  175 QPFYVVDGTVLTISGADSSAVVEGNASTRIFTVVNADLYLSHVNVSYGSSTTGGAIAAARSSLTLNGTNFVGNTASAYGGAIYVSDGSSVYC 266          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.090e-21
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    7 EPIYLVDGTALHVTGAAGS--IDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSC 276
            EP  +VDGT L V+GA  S  ++G  STR+FTVVNA L+L+G+NV+ G+S  GG IAAA S LTLN T+FVGN AS +GGA+Y S+GS V C
Sbjct:  234 EPFNVVDGTVLTVSGADSSAVVEGNASTRIFTVVNANLYLSGVNVSYGSSTVGGAIAAARSSLTLNGTSFVGNAASSYGGAIYLSDGSSVYC 325          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: A0A6H5L3Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.530e-20
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    1 MEEPIYLVDGTALHVTGAAGS--IDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSCTGGGGGTFADN 309
            + + +++VDGT L V GA  +  I+G   TRLFTVVNA LH++G+N++ GAS AG  IAAAGS  T +R NFV + A+  GG V+ S+GS  SC G G  TFADN
Sbjct:    3 VNDSVFVVDGTVLTVAGADSNAVINGNAGTRLFTVVNAALHVSGVNISLGASVAGEAIAAAGSTQTFDRANFVRHGATALGGVVFVSDGSNASCVGAG--TFADN 105          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.460e-18
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   43 VTGAAGSIDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAG-SVLTLNRTNFVGNRASGHGGAVYASNGSRVSC 276
            V G+  ++DG  +TRLFTVV+A+LH+ G+N++ GAS +GG IAA G S LT N+TNF+GN ASG+GGAVY S+GS VSC
Sbjct:   22 VRGSNAALDGNSATRLFTVVDASLHVRGVNISHGASISGGAIAAGGGSTLTFNKTNFIGNVASGNGGAVYVSDGSFVSC 100          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: A0A6H5KRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-15
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   19 LVDGTALHVTGAAGS--IDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGN----------------RASGHGGAVYASNGSRVSCTGGGGGTFADNGAGSDGG 330
            +VDGTA+ ++G   +  IDG  STRLF VVN +LH   +N++SGAS  GG +AAAGS L  N TNFVGN                RA+ HG A++A+  S VSC    GG++ +N AG+ GG
Sbjct:   46 IVDGTAITMSGEGSTAVIDGNGSTRLFIVVNTSLHFNHVNISSGASGVGGAVAAAGSSLAFNGTNFVGNKSSYVSCVGGGVFADNRAAMHGEALFATGTSEVSC----GGSWLNNTAGNSGG 163          
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.720e-15
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 MEEPIYLVDGTALHVTG---AAGSIDGGWSTRLFTVVNATLHLTGLNVTSGASAAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVY 249
            ++ PI++V GT L+VTG   A+  IDG  +TRLF+V NATL L+G+ + SG+SA GG IAA+G+ L  N T+FV N A  +GGA++
Sbjct:  164 LDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALW 249          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10699.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE1.950e-2662.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTL7_ECTSI4.330e-2564.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI5.970e-2561.05Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G5Y7_ECTSI2.200e-2259.22Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2X5_ECTSI4.870e-2158.70Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE9.090e-2159.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y9_9PHAE7.530e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIY0_ECTSI8.460e-1860.76Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KRU8_9PHAE1.430e-1545.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI5.720e-1551.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10699contigE-fasciculatus_F_contig10699:316..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue4.2e-21
Seed eggNOG ortholog2880.D8LHQ8
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.7887502-CDS-E-fasciculatus_F_contig10699:315..6451622927568.7887502-CDS-E-fasciculatus_F_contig10699:315..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10699 316..645 +
1695995599.8432035-CDS-E-fasciculatus_F_contig10699:315..6451695995599.8432035-CDS-E-fasciculatus_F_contig10699:315..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10699 316..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10699.552.1prot_E-fasciculatus_F_contig10699.552.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10699 316..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10699.552.1

>prot_E-fasciculatus_F_contig10699.552.1 ID=prot_E-fasciculatus_F_contig10699.552.1|Name=mRNA_E-fasciculatus_F_contig10699.552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MEEPIYLVDGTALHVTGAAGSIDGGWSTRLFTVVNATLHLTGLNVTSGAS
AAGGGIAAAGSVLTLNRTNFVGNRASGHGGAVYASNGSRVSCTGGGGGTF
ADNGAGSDGG
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mRNA from alignment at E-fasciculatus_F_contig10699:316..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10699.552.1 ID=mRNA_E-fasciculatus_F_contig10699.552.1|Name=mRNA_E-fasciculatus_F_contig10699.552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10699:316..645+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGCCTATCTACCTGGTAGACGGGACCGCTCTTCATGTGACCGG GGCAGCGGGTTCGATTGACGGGGGCTGGTCGACGCGGCTCTTCACCGTCG TCAACGCCACGCTGCACCTGACCGGCCTGAACGTCACCTCCGGGGCTAGC GCCGCTGGCGGGGGCATTGCTGCGGCGGGGTCCGTCTTGACACTCAACCG GACAAACTTCGTGGGGAACAGAGCTAGCGGCCACGGGGGCGCCGTGTATG CGTCGAACGGGTCCAGGGTATCATGCACCGGCGGCGGCGGGGGAACGTTT GCCGACAACGGTGCCGGCAGTGACGGCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10699:316..645+

>mRNA_E-fasciculatus_F_contig10699.552.1 ID=mRNA_E-fasciculatus_F_contig10699.552.1|Name=mRNA_E-fasciculatus_F_contig10699.552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10699:316..645+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAGCCTATCTACCTGGTAGACGGGACCGCTCTTCATGTGACCGG
GGCAGCGGGTTCGATTGACGGGGGCTGGTCGACGCGGCTCTTCACCGTCG
TCAACGCCACGCTGCACCTGACCGGCCTGAACGTCACCTCCGGGGCTAGC
GCCGCTGGCGGGGGCATTGCTGCGGCGGGGTCCGTCTTGACACTCAACCG
GACAAACTTCGTGGGGAACAGAGCTAGCGGCCACGGGGGCGCCGTGTATG
CGTCGAACGGGTCCAGGGTATCATGCACCGGCGGCGGCGGGGGAACGTTT
GCCGACAACGGTGCCGGCAGTGACGGCGGCATGGAGGAGCCTATCTACCT
GGTAGACGGGACCGCTCTTCATGTGACCGGGGCAGCGGGTTCGATTGACG
GGGGCTGGTCGACGCGGCTCTTCACCGTCGTCAACGCCACGCTGCACCTG
ACCGGCCTGAACGTCACCTCCGGGGCTAGCGCCGCTGGCGGGGGCATTGC
TGCGGCGGGGTCCGTCTTGACACTCAACCGGACAAACTTCGTGGGGAACA
GAGCTAGCGGCCACGGGGGCGCCGTGTATGCGTCGAACGGGTCCAGGGTA
TCATGCACCGGCGGCGGCGGGGGAACGTTTGCCGACAACGGTGCCGGCAG
TGACGGCGGC
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