|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig10698.551.1 vs. uniprot
Match: D7G5I1_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I1_ECTSI) HSP 1 Score: 367 bits (943), Expect = 5.760e-113 Identity = 342/474 (72.15%), Postives = 353/474 (74.47%), Query Frame = 1
Query: 151 GRAEADLSALESDDGEDVVEPEPVEDGDEMAEGYYAVGEGLVEESGGVDGAGGVGDDRDGXXXPEEREGDXXXXXXXXXXXXXXXXX----------------EAGYDSEEKNLIASAAAGEPSMVVSLSAETEQGGAAGQSG------SRGQEEEVVVPTAEELTEKYLEVARLWGPLLLNSGLPTGTGGA-NTPLPNGELLPETEAFKEKARVLAAWFHRDAVPTGRRDSKSSAASSVVRSKSGRG---SAXXXXXXXXXXXXXXXXIAADVSGAGVGASTTTQGCRSAAAGTLAKARSRRGSTAXXXXXXXXXXXXXGGSNGRLGKTRGS-GQRLSVSPPRTKVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLRKRNPLIRASSSSPRPPRASVSRPTAGEGVAKRHVATSRGGGTVTGAAAAAGRSKGAPSGEAAVTKTPARSERLRSRKASIVGGNSASKV 1491
GRAEA LSALESDDGEDVVEPEPVED DEM EGY AVGEGLVEESGGVDG R E EG XXXXXXXXXXXXXXXXX EAG+DSEE++LI+SAAAGEP VS AETEQGGAAGQSG G+EEE VVPTAEELTEKYLEV RLW P+LLN GL G GG NT LP GELL ETEAFKEKARVLAAWFH DA P RR SKSSAASSV RSKSGRG SA XXXXXXXXXXXXXXX V ASTTTQG RSAA GT A ARSRRGSTA XXXXX GQRLSVSPPR +VSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SSLRKRNPLIRAS SSPRPPRASVSRPT EGVAKRHVAT R GG+V G+AA GR KGAPSG+ AVTKTPARSE LRSRKAS+VGGNSA KV
Sbjct: 449 GRAEARLSALESDDGEDVVEPEPVEDDDEMTEGY-AVGEGLVEESGGVDGXXXXXXVR-----YREVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGEEEEEAGFDSEEESLISSAAAGEPVTAVSCPAETEQGGAAGQSGVEEGAGDSGEEEEEVVPTAEELTEKYLEVERLWRPILLNPGLAGGGGGGTNTLLPKGELLLETEAFKEKARVLAAWFHPDADPADRRCSKSSAASSVDRSKSGRGVGGSAGXXXXXXXXXXXXXXXXXXXXXXXXVKASTTTQGYRSAATGTPAMARSRRGSTASTSGASSRXXXXXXXXXXXXXXXXXXXGQRLSVSPPRARVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SSLRKRNPLIRASLSSPRPPRASVSRPTPEEGVAKRHVATRRSGGSVAGSAA--GRLKGAPSGDTAVTKTPARSEMLRSRKASVVGGNSAGKV 913
BLAST of mRNA_E-fasciculatus_F_contig10698.551.1 vs. uniprot
Match: A0A6H5KU42_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU42_9PHAE) HSP 1 Score: 287 bits (735), Expect = 2.570e-84 Identity = 271/446 (60.76%), Postives = 283/446 (63.45%), Query Frame = 1
Query: 151 GRAEADLSALESDDGEDVVEPEPVEDGDEMAEGYYAVGEGLVEESGGVDGAGG--------------VGDDRDGXXXPEEREGDXXXXXXXXXXXXXXXXXEAGYDSEEKNLIASAAAGEPSMVVSLSAETEQGGAAGQSG-SRGQEEE---------VVVPTAEELTEKYLEVARLWGPLLLNSGLPTGTGGA-NTPLPNGELLPETEAFKEKARVLAAWFHRDAVPTGRRDSKSSAASSVVRSKSGRGSAXXXXXXXXXXXXXXXXIA---ADVSGAGVGASTTTQGCRSAAAGTLAKARSRRGSTAXXXXXXXXXXXXXGGSNGRLGKTRG-SGQRLSVSPPRTKVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLRKRNPLIRASSSSPRPPRASVSRPTAGEGVAKRHVATSRGGGTVTGAAAAAGRSKGAPSG 1401
GRAEA LSALESDDGEDVV+PEPVE+ DEM EGY AVGE LV ESGGVDGAG VG D D ER D XXXXXXXXXX XX E G DSEE++LI SAAAGEP MV+S E GGAAGQSG G + PTAEELTEKYLEV RLW P+LLNSGL G GG NTPLP GELL ETEAFKEKARVLAAWFH+DA P RR SKSSAASSV SKSGRG+ XXXXXXXXXXX A A V GAGV ASTTTQ RSAA G XXXXXXXXXXXXX S QRLSVSPPR KVSAA PSSLRKRNPLIRASSSSPRPPRASVSRPT GEGVAKR+V T R G +V G+AA GR KGAP G
Sbjct: 405 GRAEAGLSALESDDGEDVVDPEPVENDDEMTEGY-AVGEVLVRESGGVDGAGEESGVRYREVVGSREVGGDWD---RQGERREDGGSXXXXXXXXXXEXXEEVGCDSEEESLIFSAAAGEPVMVISRPTVAEHGGAAGQSGIEEGAGDSGXXXXXXXXXXXPTAEELTEKYLEVERLWRPILLNSGLADGGGGGTNTPLPIGELLLETEAFKEKARVLAAWFHQDAGPADRRCSKSSAASSVDWSKSGRGAGGSXXXXXXXXXXXTAAAARKTAGVVGAGVEASTTTQ--RSAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRQRLSVSPPRAKVSAAAAARVGAGRRPSGGKGMPAAAKTSSATAA-PSSLRKRNPLIRASSSSPRPPRASVSRPTGGEGVAKRNVGTRRSGRSVAGSAA--GRLKGAPLG 841
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | SAP domain |
| Ec32 ortholog | Ec-22_000690.4 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1503 |
| Cds size | 1503 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10698.551.1 >prot_E-fasciculatus_F_contig10698.551.1 ID=prot_E-fasciculatus_F_contig10698.551.1|Name=mRNA_E-fasciculatus_F_contig10698.551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=501bp
SDAEEEGGDENAAAAAAAAVAAAVVASGSTAPGDGGVISADSSGGVVAGG
GRAEADLSALESDDGEDVVEPEPVEDGDEMAEGYYAVGEGLVEESGGVDG
AGGVGDDRDGQEGPEEREGDGGSGGDREDGQRGEEEEEAGYDSEEKNLIA
SAAAGEPSMVVSLSAETEQGGAAGQSGSRGQEEEVVVPTAEELTEKYLEV
ARLWGPLLLNSGLPTGTGGANTPLPNGELLPETEAFKEKARVLAAWFHRD
AVPTGRRDSKSSAASSVVRSKSGRGSAGGAGRGAGGAAAAAARIAADVSG
AGVGASTTTQGCRSAAAGTLAKARSRRGSTASTSGASRASESSGGGSNGR
LGKTRGSGQRLSVSPPRTKVSAAAAARAGASRRPSAGGKGMLLAARTSAT
SAAPSSLRKRNPLIRASSSSPRPPRASVSRPTAGEGVAKRHVATSRGGGT
VTGAAAAAGRSKGAPSGEAAVTKTPARSERLRSRKASIVGGNSASKVRQA
* back to topmRNA from alignment at E-fasciculatus_F_contig10698:1467..4755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10698.551.1 ID=mRNA_E-fasciculatus_F_contig10698.551.1|Name=mRNA_E-fasciculatus_F_contig10698.551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3289bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10698:1467..4755- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGACGCAGAGGAAGAGGGCGGCGATGAAAATGCGGCGGCGGCGGCGGC
GGCGGCGGTGGCGGCGGCGGTGGTGGCATCAGGGTCGACGGCGCCAGGCG
ATGGCGGCGTTATTTCGGCGGACAGCAGCGGGGGTGTTGTTGCGGGGGGG
GGGCGTGCCGAGGCGGACTTGTCGGCGTTGGAGAGCGATGACGGCGAGGA
TGTTGTAGAACCCGAGCCGGTGGAAGACGGCGATGAGATGGCCGAGGGAT
ACTACGCTGTGGGTGAAGGGCTAGTCGAGGAAAGCGGCGGTGTTGACGGT
GCGGGGGGGGTAGGAGATGACCGGGACGGACAAGAGGGTCCAGAAGAAAG
AGAGGGGGATGGGGGCAGCGGTGGGGACAGAGAGGACGGGCAGCGGGGAG
AGGAGGAGGAAGAGGCGGGGTACGATTCTGAGGAGAAAAACCTCATCGCT
TCGGCGGCGGCAGGCGAGCCTTCGATGGTTGTTTCTCTTTCGGCAGAGAC
GGAGCAAGGTGGCGCGGCGGGGCAGAGCGGGAGCAGGGGGCAGGAGGAAG
AGGTTGTTGTGCCGACAGCAGAGGAACTCACCGAGAAGTACCTGGAAGTG
GCGGTGAGATAGAGAGGGAGGGGAGGGGCGGTGGTGAGATAGGGACGGGG
GGGGCGGGGACCGAATTCTTCCGATGCACATTAGGTGGTAACGTAGTGTG
TATCTTTGGCTCGTCGAACGCGTGAGTGACTTGGAAAGCACGACAGCCCT
TGGTGTATCTAAACACTACGAATGGGCCCGGTGTACAGTATGGGATCACC
TTACGGCCTCCCGCAATCTCTAGTCCCGACCAAAATACCGAAAGAAGAAT
GCTTTCGGCTTAAGTTCCATGGTCTGGCGCTCACGTGTGCTCGGCTCTTC
TCCCGCAGCAAAAAAAAATCCCCTATGCATATTCGCCTGCAGTCATGAAC
ATCTCTACTTGCAGCGGCTATGGCGGCAATTCTGTCAAACTCTGGCCTAG
CCTCAAGCGCAAAATATCGCTTCCCCGATGCATGCTCGCCTGCAATCATG
AACGTCTCTACTTGCAGCGGCTATGGCGGCAATTCTGTCAAACTCTGGCC
TAGCCTCAAGCGCAAAATAACGCTTCCCCTACGCATGCTCGCCTGCAATC
ATGAACGTCTCTACTTCGCAGCGTCTCTGGGGGCCACTTCTACTAAACTC
CGGCCTGCCCACCGGTACCGGCGGCGCGAACACCCCGCTCCCGAACGGGG
AGTTGCTACCAGAGACGGAGGCGTTCAAGGAGAAGGCGAGAGTGCTGGCG
GCGTGGTTCCACCGCGATGCCGTCCCGACCGGCAGGCGGGACTCTAAGAG
CAGCGCGGCTTCGTCTGTCGTTCGGTCCAAGTCGGGGCGTGGGAGCGCAG
GGGGCGCCGGGCGGGGGGCGGGAGGGGCAGCCGCCGCTGCTGCTCGGATT
GCTGCCGATGTTAGTGGGGCGGGCGTGGGGGCGTCGACGACGACGCAAGG
GTGCAGGTGCGTTGTTGCCTCCGGGCTTTGTGCCAAGGTGGCGTGCTCCC
GGGTATTTGTTTGTTGTGGGAAGGGGGCAGATTAAGATTCCTGCCCCCGA
GTCGCCGCTCTTGGGAAGCACCACCACCTGTTGGCAAGCGGAAATTGTGT
GTACGATCACTGACTGTTCGATGTACCCGTTCGAGAAAACACCCCGGCCG
AAGAGCTGGGTGTTGGTGGTGGTATTGAATGTCGCATATTAGTCGACCAG
CGACGCCGGTCCTTCCCGCCACATACATACGATGCCCTTGTCCGACAACG
GCCGTGTGGTGATCCAACACCCTCCCCCCCCTTCCCCGGCAAGGACAGGT
CCGCCGCCGCCGGCACGCTTGCCAAGGCGCGCTCTCGCCGCGGTTCGACA
GCGTCAACCTCTGGAGCTTCCCGTGCAAGCGAGAGTAGCGGAGGCGGCTC
GAACGGCCGCCTGGGGAAAACTCGCGGGAGCGGCCAGCGCTTGTCCGTTA
GCCCCCCCCGCACGAAGGTGTCCGCGGCGGCGGCGGCTAGAGCCGGCGCA
AGCCGGCGTCCTTCGGCGGGGGGGAAGGGGATGCTGCTAGCGGCGAGGAC
GTCTGCCACAAGCGCCGCCCCTTCCTCGTTGCGCAAGCGCAACCCGTTGA
TCCGGGCGTCGTCGTCGTCGCCCCGGCCTCCCAGAGCTTCGGTTTCGAGG
CCCACGGCTGGGGAAGGGGTTGCGAAACGGCACGTGGCGACGAGTAGGGG
CGGCGGGACCGTTACCGGGGCGGCGGCGGCGGCCGGGCGCTCCAAAGGCG
CGCCGTCAGGTGAATTTCGCAGCAGTGTTGTGTAAGAGGGTTGAGGGTTG
AGAAGCAGGTTTTCATTTGGTGTGGTTTGCTCTTTTTTTTTTTGGTAGTG
TGAGGACGGGGAGGCTCGCCGTCCCCGTGGTGCAATCGCAACAACCAATG
TGTCGGTTGTGTATATATCGAGATTATGGGGGTTTTCTTCCCGACATTAA
TTGCGCTGTAAAGAGTAAGCAGCCCCTTTCGGCTGGTAGGAGCTAGCCAT
CATCTGTTGTGTCGCACTACCAAAGAAAATGGTTCCATAAGTATCCAACT
CGAGATAATTCCAGGGATGGTGGAAGGAGGTCGAGGAGTTGCATCGCATG
TGGATGTTGGATTGACTTTGTGCTACACGTTGGATCTTTATCTTCCTTCA
CACCCTGTGACGTCATGAAACATTTGGACTGCACTGAGAAATGAATGCAA
CGGTCGAGTCATTTATTTCTTTTTTCATCACTTGATATGATATGAACGCT
GACAGCATTCTACCGGGATTCAATATTTGTTTGCCTGTTTTGGCCAACGG
ACATACGACGGGCAGTTTTTTGTTGTGCACTTTTCTGGTGCAGGTCGATC
CGCTGTGTTCTTTCCACAGATGATATAGACCGCCTGCTTGTACGTTGAGC
TGTTGTGCTCGTTGCCGCAGCGGTTGTTGCTTTCGTTGATGTTGCTGTCG
TCATTGTGGTTGTGGTTGTTGTCGTAAGTGTTTCGGCTGCCCCTGTCCTC
AAAGCATCCAACCCTCCCCCCCTCTACCATGCCTCAGCACTTGTTTTTTT
TCCTGACGCACATGCACAATATCTTAAACAACTTGCTTTGTGGCTGGCGC
AATACCACTCCCCCGCCCCACACGGTGATCACCAGGCGAGGCGGCGGTTA
CAAAAACGCCTGCCAGGAGCGAAAGACTCCGTTCCCGCAAGGCATCTATC
GTGGGTGGTAACAGCGCAAGCAAGGTGCGTCAGGCATGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10698:1467..4755- >mRNA_E-fasciculatus_F_contig10698.551.1 ID=mRNA_E-fasciculatus_F_contig10698.551.1|Name=mRNA_E-fasciculatus_F_contig10698.551.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3006bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10698:1467..4755- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGACGCAGAGGAAGAGGGCGGCGATGAAAATGCGGCGGCGGCGGCGGC
GGCGGCGGTGGCGGCGGCGGTGGTGGCATCAGGGTCGACGGCGCCAGGCG
ATGGCGGCGTTATTTCGGCGGACAGCAGCGGGGGTGTTGTTGCGGGGGGG
GGGCGTGCCGAGGCGGACTTGTCGGCGTTGGAGAGCGATGACGGCGAGGA
TGTTGTAGAACCCGAGCCGGTGGAAGACGGCGATGAGATGGCCGAGGGAT
ACTACGCTGTGGGTGAAGGGCTAGTCGAGGAAAGCGGCGGTGTTGACGGT
GCGGGGGGGGTAGGAGATGACCGGGACGGACAAGAGGGTCCAGAAGAAAG
AGAGGGGGATGGGGGCAGCGGTGGGGACAGAGAGGACGGGCAGCGGGGAG
AGGAGGAGGAAGAGGCGGGGTACGATTCTGAGGAGAAAAACCTCATCGCT
TCGGCGGCGGCAGGCGAGCCTTCGATGGTTGTTTCTCTTTCGGCAGAGAC
GGAGCAAGGTGGCGCGGCGGGGCAGAGCGGGAGCAGGGGGCAGGAGGAAG
AGGTTGTTGTGCCGACAGCAGAGGAACTCACCGAGAAGTACCTGGAAGTG
GCGTCGGACGCAGAGGAAGAGGGCGGCGATGAAAATGCGGCGGCGGCGGC
GGCGGCGGCGGTGGCGGCGGCGGTGGTGGCATCAGGGTCGACGGCGCCAG
GCGATGGCGGCGTTATTTCGGCGGACAGCAGCGGGGGTGTTGTTGCGGGG
GGGGGGCGTGCCGAGGCGGACTTGTCGGCGTTGGAGAGCGATGACGGCGA
GGATGTTGTAGAACCCGAGCCGGTGGAAGACGGCGATGAGATGGCCGAGG
GATACTACGCTGTGGGTGAAGGGCTAGTCGAGGAAAGCGGCGGTGTTGAC
GGTGCGGGGGGGGTAGGAGATGACCGGGACGGACAAGAGGGTCCAGAAGA
AAGAGAGGGGGATGGGGGCAGCGGTGGGGACAGAGAGGACGGGCAGCGGG
GAGAGGAGGAGGAAGAGGCGGGGTACGATTCTGAGGAGAAAAACCTCATC
GCTTCGGCGGCGGCAGGCGAGCCTTCGATGGTTGTTTCTCTTTCGGCAGA
GACGGAGCAAGGTGGCGCGGCGGGGCAGAGCGGGAGCAGGGGGCAGGAGG
AAGAGGTTGTTGTGCCGACAGCAGAGGAACTCACCGAGAAGTACCTGGAA
GTGGCGCGTCTCTGGGGGCCACTTCTACTAAACTCCGGCCTGCCCACCGG
TACCGGCGGCGCGAACACCCCGCTCCCGAACGGGGAGTTGCTACCAGAGA
CGGAGGCGTTCAAGGAGAAGGCGAGAGTGCTGGCGGCGTGGTTCCACCGC
GATGCCGTCCCGACCGGCAGGCGGGACTCTAAGAGCAGCGCGGCTTCGTC
TGTCGTTCGGTCCAAGTCGGGGCGTGGGAGCGCAGGGGGCGCCGGGCGGG
GGGCGGGAGGGGCAGCCGCCGCTGCTGCTCGGATTGCTGCCGATGTTAGT
GGGGCGGGCGTGGGGGCGTCGACGACGACGCAAGGGTGCAGCGTCTCTGG
GGGCCACTTCTACTAAACTCCGGCCTGCCCACCGGTACCGGCGGCGCGAA
CACCCCGCTCCCGAACGGGGAGTTGCTACCAGAGACGGAGGCGTTCAAGG
AGAAGGCGAGAGTGCTGGCGGCGTGGTTCCACCGCGATGCCGTCCCGACC
GGCAGGCGGGACTCTAAGAGCAGCGCGGCTTCGTCTGTCGTTCGGTCCAA
GTCGGGGCGTGGGAGCGCAGGGGGCGCCGGGCGGGGGGCGGGAGGGGCAG
CCGCCGCTGCTGCTCGGATTGCTGCCGATGTTAGTGGGGCGGGCGTGGGG
GCGTCGACGACGACGCAAGGGTGCAGGTCCGCCGCCGCCGGCACGCTTGC
CAAGGCGCGCTCTCGCCGCGGTTCGACAGCGTCAACCTCTGGAGCTTCCC
GTGCAAGCGAGAGTAGCGGAGGCGGCTCGAACGGCCGCCTGGGGAAAACT
CGCGGGAGCGGCCAGCGCTTGTCCGTTAGCCCCCCCCGCACGAAGGTGTC
CGCGGCGGCGGCGGCTAGAGCCGGCGCAAGCCGGCGTCCTTCGGCGGGGG
GGAAGGGGATGCTGCTAGCGGCGAGGACGTCTGCCACAAGCGCCGCCCCT
TCCTCGTTGCGCAAGCGCAACCCGTTGATCCGGGCGTCGTCGTCGTCGCC
CCGGCCTCCCAGAGCTTCGGTTTCGAGGCCCACGGCTGGGGAAGGGGTTG
CGAAACGGCACGTGGCGACGAGTAGGGGCGGCGGGACCGTTACCGGGGCG
GCGGCGGCGGCCGGGCGCTCCAAAGGCGCGCCGTCAGGTCCGCCGCCGCC
GGCACGCTTGCCAAGGCGCGCTCTCGCCGCGGTTCGACAGCGTCAACCTC
TGGAGCTTCCCGTGCAAGCGAGAGTAGCGGAGGCGGCTCGAACGGCCGCC
TGGGGAAAACTCGCGGGAGCGGCCAGCGCTTGTCCGTTAGCCCCCCCCGC
ACGAAGGTGTCCGCGGCGGCGGCGGCTAGAGCCGGCGCAAGCCGGCGTCC
TTCGGCGGGGGGGAAGGGGATGCTGCTAGCGGCGAGGACGTCTGCCACAA
GCGCCGCCCCTTCCTCGTTGCGCAAGCGCAACCCGTTGATCCGGGCGTCG
TCGTCGTCGCCCCGGCCTCCCAGAGCTTCGGTTTCGAGGCCCACGGCTGG
GGAAGGGGTTGCGAAACGGCACGTGGCGACGAGTAGGGGCGGCGGGACCG
TTACCGGGGCGGCGGCGGCGGCCGGGCGCTCCAAAGGCGCGCCGTCAGGC
GAGGCGGCGGTTACAAAAACGCCTGCCAGGAGCGAAAGACTCCGTTCCCG
CAAGGCATCTATCGTGGGTGGTAACAGCGCAAGCAAGGTGCGTCAGGCAT
GAGCGAGGCGGCGGTTACAAAAACGCCTGCCAGGAGCGAAAGACTCCGTT
CCCGCAAGGCATCTATCGTGGGTGGTAACAGCGCAAGCAAGGTGCGTCAG
GCATGA back to top
|