mRNA_E-fasciculatus_F_contig10692.548.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10692.548.1
Unique NamemRNA_E-fasciculatus_F_contig10692.548.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10692.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10692contigE-fasciculatus_F_contig10692:3299..3888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10692.548.1prot_E-fasciculatus_F_contig10692.548.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10692 3300..3888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.3280773-UTR-E-fasciculatus_F_contig10692:3298..32991622927568.3280773-UTR-E-fasciculatus_F_contig10692:3298..3299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10692 3299..3299 +
1695995599.628003-UTR-E-fasciculatus_F_contig10692:3298..32991695995599.628003-UTR-E-fasciculatus_F_contig10692:3298..3299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10692 3299..3299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.3656323-CDS-E-fasciculatus_F_contig10692:3299..33861622927568.3656323-CDS-E-fasciculatus_F_contig10692:3299..3386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10692 3300..3386 +
1695995599.636999-CDS-E-fasciculatus_F_contig10692:3299..33861695995599.636999-CDS-E-fasciculatus_F_contig10692:3299..3386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10692 3300..3386 +
1622927568.3831613-CDS-E-fasciculatus_F_contig10692:3804..38881622927568.3831613-CDS-E-fasciculatus_F_contig10692:3804..3888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10692 3805..3888 +
1695995599.646848-CDS-E-fasciculatus_F_contig10692:3804..38881695995599.646848-CDS-E-fasciculatus_F_contig10692:3804..3888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10692 3805..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10692.548.1

>prot_E-fasciculatus_F_contig10692.548.1 ID=prot_E-fasciculatus_F_contig10692.548.1|Name=mRNA_E-fasciculatus_F_contig10692.548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=57bp
MSSDDNNCDNEEGEDCNELSMTGLVILIWMFVGFGVNWFLRVVYVPYSHV
FVEVFHY
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mRNA from alignment at E-fasciculatus_F_contig10692:3299..3888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10692.548.1 ID=mRNA_E-fasciculatus_F_contig10692.548.1|Name=mRNA_E-fasciculatus_F_contig10692.548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=590bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10692:3299..3888+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGTCTTCTGACGATAACAACTGCGACAACGAGGAGGGTGAGGATTGCA
ACGAGTTATCCATGACGGGCCTCGTCATATTGATCTGGGTATGTACCGTG
TGCGAGTTGTTCTTGAGACAAGCACACGCTCTTTGAAGGAGAGCGGGCCG
GAGCAGAACCCTTGTAAGCGTTTGTTCACTTCCGGGACAGGGCGAAAGAA
AACTACAACAAACGTTTTTGACACAGATTTTGTGCCGTCGGTCGAATGTT
CATGCGGCGAAAATGTGCAAGGAAATGCCACGATATGAGCTACATACCCA
ATGATGTGCATTGAAAAATTGTGTCATTTCAAATTGCTGTGTGTTTTCGC
GAGGACGACAAACCACTTGGGAGCTACAATATTTATCGCCCATCGATAAA
TGGACGTCCCCTGTGTCAACTCGAGATTGAGCCAAATTTCCCCAACGTTA
TCCGGCCCATTGTCAACTATTGTAACGCCGACTTTGTGTTGCAATCGTGC
CGTCAGATGTTCGTGGGGTTTGGAGTGAACTGGTTTCTTCGGGTAGTGTA
TGTTCCGTACTCCCACGTCTTCGTGGAGGTCTTTCATTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10692:3299..3888+

>mRNA_E-fasciculatus_F_contig10692.548.1 ID=mRNA_E-fasciculatus_F_contig10692.548.1|Name=mRNA_E-fasciculatus_F_contig10692.548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10692:3299..3888+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTCTGACGATAACAACTGCGACAACGAGGAGGGTGAGGATTGCAA
CGAGTTATCCATGACGGGCCTCGTCATATTGATCTGGATGTCTTCTGACG
ATAACAACTGCGACAACGAGGAGGGTGAGGATTGCAACGAGTTATCCATG
ACGGGCCTCGTCATATTGATCTGGATGTTCGTGGGGTTTGGAGTGAACTG
GTTTCTTCGGGTAGTGTATGTTCCGTACTCCCACGTCTTCGTGGAGGTCT
TTCATTACATGTTCGTGGGGTTTGGAGTGAACTGGTTTCTTCGGGTAGTG
TATGTTCCGTACTCCCACGTCTTCGTGGAGGTCTTTCATTAC
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