mRNA_E-fasciculatus_F_contig10679.537.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10679.537.1
Unique NamemRNA_E-fasciculatus_F_contig10679.537.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10679.537.1 vs. uniprot
Match: D7FS03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS03_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 8.720e-58
Identity = 114/125 (91.20%), Postives = 118/125 (94.40%), Query Frame = 3 
Query:  711 MVVGEKATASGRAEGAGLNQASEEIDDPVVDEEASKQAMKKQQLTELAELVQAEIERAAKAQVFEHLKERTAHAFQEASDLREELERTEAAVVGGKKKRDIDVAERETQLKLYEEEIRRLEAEGA 1085
            MVVGEKATAS RAEGAG NQASEE +DP+VDEEASKQA KKQQLTELAELVQAEI+RAAKAQV EHLKERTAHAFQEASDLREELERTEAAVVGGKKKRDIDVAERE QLK+YEEEIRRLEAE A
Sbjct:    1 MVVGEKATASARAEGAGPNQASEESEDPIVDEEASKQAAKKQQLTELAELVQAEIDRAAKAQVLEHLKERTAHAFQEASDLREELERTEAAVVGGKKKRDIDVAEREAQLKIYEEEIRRLEAESA 125
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BLAST of mRNA_E-fasciculatus_F_contig10679.537.1 vs. uniprot
Match: D7FS02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS02_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-14
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 3 
Query: 1308 MAGQKTQLRLARDAEKIRLDLEKGLNEEFRSLRRETEVLRREKTHKDAEVRAV---CSSVEKKRLTAFVPVS 1514
            MAGQK QLRLARDAEKIRLDLE+GL+EEFRSLRRETEVLRREK HKD+E+  +    + +E+ + TA V ++
Sbjct:    1 MAGQKAQLRLARDAEKIRLDLERGLSEEFRSLRRETEVLRREKAHKDSEINRIMRKAAQIERDQRTAGVELA 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10679.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS03_ECTSI8.720e-5891.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FS02_ECTSI5.400e-1466.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10679contigE-fasciculatus_F_contig10679:1329..4514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1514
Cds size1161
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.7029715-UTR-E-fasciculatus_F_contig10679:1328..16811622927565.7029715-UTR-E-fasciculatus_F_contig10679:1328..1681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10679 1329..1681 +
1695995598.8129685-UTR-E-fasciculatus_F_contig10679:1328..16811695995598.8129685-UTR-E-fasciculatus_F_contig10679:1328..1681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10679 1329..1681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.7179408-CDS-E-fasciculatus_F_contig10679:1681..21101622927565.7179408-CDS-E-fasciculatus_F_contig10679:1681..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 1682..2110 +
1695995598.8283792-CDS-E-fasciculatus_F_contig10679:1681..21101695995598.8283792-CDS-E-fasciculatus_F_contig10679:1681..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 1682..2110 +
1622927565.7663732-CDS-E-fasciculatus_F_contig10679:2424..25471622927565.7663732-CDS-E-fasciculatus_F_contig10679:2424..2547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 2425..2547 +
1695995598.8387337-CDS-E-fasciculatus_F_contig10679:2424..25471695995598.8387337-CDS-E-fasciculatus_F_contig10679:2424..2547Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 2425..2547 +
1622927565.7758706-CDS-E-fasciculatus_F_contig10679:2844..30181622927565.7758706-CDS-E-fasciculatus_F_contig10679:2844..3018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 2845..3018 +
1695995598.8509798-CDS-E-fasciculatus_F_contig10679:2844..30181695995598.8509798-CDS-E-fasciculatus_F_contig10679:2844..3018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 2845..3018 +
1622927565.7853525-CDS-E-fasciculatus_F_contig10679:3464..35991622927565.7853525-CDS-E-fasciculatus_F_contig10679:3464..3599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 3465..3599 +
1695995598.8665612-CDS-E-fasciculatus_F_contig10679:3464..35991695995598.8665612-CDS-E-fasciculatus_F_contig10679:3464..3599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 3465..3599 +
1622927565.7951102-CDS-E-fasciculatus_F_contig10679:3954..40821622927565.7951102-CDS-E-fasciculatus_F_contig10679:3954..4082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 3955..4082 +
1695995598.8774285-CDS-E-fasciculatus_F_contig10679:3954..40821695995598.8774285-CDS-E-fasciculatus_F_contig10679:3954..4082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 3955..4082 +
1622927565.8094885-CDS-E-fasciculatus_F_contig10679:4342..45141622927565.8094885-CDS-E-fasciculatus_F_contig10679:4342..4514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 4343..4514 +
1695995598.887579-CDS-E-fasciculatus_F_contig10679:4342..45141695995598.887579-CDS-E-fasciculatus_F_contig10679:4342..4514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10679 4343..4514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10679.537.1prot_E-fasciculatus_F_contig10679.537.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10679 1682..4514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10679.537.1

>prot_E-fasciculatus_F_contig10679.537.1 ID=prot_E-fasciculatus_F_contig10679.537.1|Name=mRNA_E-fasciculatus_F_contig10679.537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=387bp
MPPAASSRMGARRSRRSVGLEGERAVGERARGVVRGLSPEENTKVRNING
SGEATAAENNNNSTIDVMIPRKPLQLRQQQQQTMKSANRGSEGGVGTRRV
SNQRLVNDPKIGDGDQGRIMVVGEKATASGRAEGAGLNQASEEIDDPVVD
EEASKQAMKKQQLTELAELVQAEIERAAKAQVFEHLKERTAHAFQEASDL
REELERTEAAVVGGKKKRDIDVAERETQLKLYEEEIRRLEAEGAYLRSQL
TRSVNAETRLANELKRTQESLLFLSAWDEEKIELEAEVASLKSQLSSAIE
EGNNRLERTQQDFNIASAMAGQKTQLRLARDAEKIRLDLEKGLNEEFRSL
RRETEVLRREKTHKDAEVRAVCSSVEKKRLTAFVPVS
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mRNA from alignment at E-fasciculatus_F_contig10679:1329..4514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10679.537.1 ID=mRNA_E-fasciculatus_F_contig10679.537.1|Name=mRNA_E-fasciculatus_F_contig10679.537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3186bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10679:1329..4514+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGTCCGGCCCCGCCACGGCGGGCCGCGCGGAAAAAGTCCCTCTCTTGCAC
CATTCTGGGTGCCGTACTGGAGCCTTTGCCGCCTCTTTTATGCTTCGTCC
CGTACAATTCAAGAGGGCGGGGGGTTCAGCGCTCACTACGAGACCGGCGG
CTGCTCGACGTAGAGACAGACATGCGCGCACCAGGCATGCGCGTGGGATC
TGTTGAAAGGCGAACTGCTCTTGTGCGATTGTGTGGCACCTGGTGCACCT
TCGCGTGAAAAACAGGAGAGGAGACCAATACGCTAAGGGACTCAGTGACG
TGTGGCCGGACGTGTTCTACTGTTCGCACAGCAGCCGTCGATTTGTCGTG
TAGATGCCGCCGGCCGCTTCCAGCCGGATGGGGGCGCGGCGCTCTAGGCG
TTCGGTTGGCCTCGAAGGCGAACGGGCTGTGGGTGAGAGAGCAAGGGGCG
TGGTCCGGGGATTGTCTCCTGAGGAAAATACCAAAGTTCGAAATATAAAT
GGAAGCGGCGAGGCGACCGCCGCAGAGAACAACAACAACAGCACAATCGA
TGTCATGATTCCTCGAAAACCCTTGCAGCTGCGGCAACAACAGCAACAAA
CTATGAAATCAGCAAATAGGGGGAGCGAAGGTGGGGTCGGCACGCGGAGG
GTAAGCAACCAGCGTTTGGTCAACGACCCCAAGATTGGCGATGGCGATCA
AGGGCGCATTATGGTCGTCGGCGAAAAGGCGACGGCTTCGGGACGTGCTG
AGGGCGCCGGACTTAACCAGGCTAGCGAAGAGGTAATGTAGGTAGAGCGA
GGTACACTGCTTGAAATAACGCAGGGTTCGATTTGTGAGAGCAAGCAGAC
GGTCGAGAGAACAAAAGCTCTGCAGGTGTCAGTATCGAGTGTGATGCCTT
CAAGACACAAGCACTCGCGCTACGTCAGCAGGCTAGGCTTCTAATACCGG
CTGGATATTCCCATCCGTGAATGAACAATAACTTGGAGGAACACTTCAAC
AAGGTAGTGATACGTGTTCACCTGCACATCGATAAGTGGACGTGCATACC
ACTACCACCGTATGGCGCTGCTACCGCTCTTGCTTTTGCCGCAAAGATCG
ACGACCCCGTTGTGGACGAGGAAGCATCCAAGCAAGCCATGAAGAAGCAA
CAACTCACGGAGTTGGCCGAACTGGTTCAGGCTGAGATCGAGCGGGCTGC
TAAGGCTCAAGTCTTTGAGGTAAGGTTGCCTAAAGAAACCACTGCTATAA
CCGCCCGGTACCTTTGAGAAAGGTACACACAACCTGCCCCGGGTGAATTT
GAGGTACAAACAAACCCCGCTGTCTGTTCTTCTCTCCTTCTCTGCTGCGC
ACAGTTGAAAGCAAGGGTTTGCAGAGACACAGGTGGCCCTTGATTAAACA
TTGCTATTGGTGTTTATAGGTACACGTCTAGATGCGTCTAATGCTGTACA
GTGTACCTGACGCTGTTCTTTTCCACCCTTCGGTTTTGCGTCCCTGACTC
ACCTGCGCGCACGCAGCACTTGAAGGAACGAACGGCACACGCCTTTCAGG
AAGCGTCCGATCTCCGTGAGGAGCTGGAGAGGACGGAAGCCGCGGTAGTC
GGAGGCAAGAAGAAGCGAGACATCGACGTGGCGGAGCGGGAAACCCAGCT
CAAGCTGTACGAGGAAGAGATCCGTAGGTTGGAGGCGGAGGTGCGTATTG
CTGTTGTACATTTAGCATGGGTTTGGCAGTGATTGCTTTTTTGTAGACGG
TGGCTAACAAAGAGTCCGGACGGTAATGTAGTGAAGTTCCGCAGAAACAC
TTTCTTTGGCATACGTAGTCGGCAAACAAAACTTACCCAAAGCAATCATC
TTCTTGCATGTCGATGCGACTGGCTAATGTGCAACCGAGAAGCTGGGCGT
GTGGCACCCTAACTCCTTTTCTGGGGATAATGGTTGTGGGTCGTTTAGGA
GTAAACGGTTTTTTGGGGGTTCTCTTTCTTCCTATATAGTGAAACTCCGT
GAATAGGTGGGCGGAGAAAACAAAAAAGAGGTCGGGAAAACGTGGAGGCA
GACGTTTAAGTTAATCTGCTCGAAAACGACGACAAAGTAAAATGCACACA
ACACGTGTACTGGCTGTGTTCGTTGCGTGCGTCCAGGGTGCATACCTCCG
CAGCCAGCTAACCAGAAGCGTCAACGCAGAGACGAGGCTGGCGAACGAGC
TCAAGAGGACGCAGGAGTCGCTCTTGTTCCTCTCCGCGTGGGACGAGGAA
AAGATTGAGCTCGAGGCGGAGGTGAGGCACGGCGGTAAAACACGTAGGAG
TACAAGAATAACGGTGTGCATGCTCGCCGATACTTTGGAAGCAGGTCGTT
CGAGTGAATGTAAGACGATGGCGTGTTGTTTTTTGTAGTATTGGGGGTAT
TGCGGTGACCCGGGGTGTGCTTCTTGGATAGAAAATGAGAGAGGAGTGGT
GGTCACCAGAGTGCTCACGTCGCAATCGGATTTTGCGCTTTTGTGCGTGA
ATGACCGCAAAAGTTCTCCGAGGTCCTTCACCCACCCCCGCCTACCTGAC
TGTCTGTGTCCGCTCAACATTATCTTTCCGATCCTTGGAAACATGAAAAA
AATGCATCTTCAATTCAACGCTCAAGGTTGCAAGCCTCAAGTCCCAGCTG
TCTTCCGCGATCGAGGAAGGAAATAACCGGTTGGAACGCACGCAGCAAGA
TTTCAACATAGCCTCCGCGATGGCGGGGCAAAAGACACAACTACGGCTCG
CGAGGTAAGGCGAGGGCTGAGGGGGGGGGTTGCTTCCTTGGCAGCGGAAG
TTGCGCGTGTTGCCTGGACTTATCTCTCCACGCGATAGCATGTGTGGTAC
CCCGCTCACTGCGTGTGTTTTCTTCCAGCCCCCCGTCCTTGGAGAACCGC
CTCATATGTTAACTCCTCCCCCCCGAAGTCGGCGGTCTAACGACTACAGC
ATGCACAGCTATGGATACCCCCCCCCCCGTACGACGGCACGGGGCCAACC
AATCATCGTCTCAGGGATGCCGAGAAGATCCGGCTCGATCTTGAGAAGGG
GCTTAACGAGGAGTTCAGGAGCCTGAGGCGAGAGACGGAGGTGCTCCGGC
GGGAGAAGACGCACAAGGATGCAGAGGTGCGAGCTGTTTGTTCTAGCGTG
GAGAAGAAGAGACTAACGGCATTTGTCCCGGTCTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10679:1329..4514+

>mRNA_E-fasciculatus_F_contig10679.537.1 ID=mRNA_E-fasciculatus_F_contig10679.537.1|Name=mRNA_E-fasciculatus_F_contig10679.537.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2322bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10679:1329..4514+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCCGGCCGCTTCCAGCCGGATGGGGGCGCGGCGCTCTAGGCGTTC
GGTTGGCCTCGAAGGCGAACGGGCTGTGGGTGAGAGAGCAAGGGGCGTGG
TCCGGGGATTGTCTCCTGAGGAAAATACCAAAGTTCGAAATATAAATGGA
AGCGGCGAGGCGACCGCCGCAGAGAACAACAACAACAGCACAATCGATGT
CATGATTCCTCGAAAACCCTTGCAGCTGCGGCAACAACAGCAACAAACTA
TGAAATCAGCAAATAGGGGGAGCGAAGGTGGGGTCGGCACGCGGAGGGTA
AGCAACCAGCGTTTGGTCAACGACCCCAAGATTGGCGATGGCGATCAAGG
GCGCATTATGGTCGTCGGCGAAAAGGCGACGGCTTCGGGACGTGCTGAGG
GCGCCGGACTTAACCAGGCTAGCGAAGAGATGCCGCCGGCCGCTTCCAGC
CGGATGGGGGCGCGGCGCTCTAGGCGTTCGGTTGGCCTCGAAGGCGAACG
GGCTGTGGGTGAGAGAGCAAGGGGCGTGGTCCGGGGATTGTCTCCTGAGG
AAAATACCAAAGTTCGAAATATAAATGGAAGCGGCGAGGCGACCGCCGCA
GAGAACAACAACAACAGCACAATCGATGTCATGATTCCTCGAAAACCCTT
GCAGCTGCGGCAACAACAGCAACAAACTATGAAATCAGCAAATAGGGGGA
GCGAAGGTGGGGTCGGCACGCGGAGGGTAAGCAACCAGCGTTTGGTCAAC
GACCCCAAGATTGGCGATGGCGATCAAGGGCGCATTATGGTCGTCGGCGA
AAAGGCGACGGCTTCGGGACGTGCTGAGGGCGCCGGACTTAACCAGGCTA
GCGAAGAGATCGACGACCCCGTTGTGGACGAGGAAGCATCCAAGCAAGCC
ATGAAGAAGCAACAACTCACGGAGTTGGCCGAACTGGTTCAGGCTGAGAT
CGAGCGGGCTGCTAAGGCTCAAGTCTTTGAGATCGACGACCCCGTTGTGG
ACGAGGAAGCATCCAAGCAAGCCATGAAGAAGCAACAACTCACGGAGTTG
GCCGAACTGGTTCAGGCTGAGATCGAGCGGGCTGCTAAGGCTCAAGTCTT
TGAGCACTTGAAGGAACGAACGGCACACGCCTTTCAGGAAGCGTCCGATC
TCCGTGAGGAGCTGGAGAGGACGGAAGCCGCGGTAGTCGGAGGCAAGAAG
AAGCGAGACATCGACGTGGCGGAGCGGGAAACCCAGCTCAAGCTGTACGA
GGAAGAGATCCGTAGGTTGGAGGCGGAGCACTTGAAGGAACGAACGGCAC
ACGCCTTTCAGGAAGCGTCCGATCTCCGTGAGGAGCTGGAGAGGACGGAA
GCCGCGGTAGTCGGAGGCAAGAAGAAGCGAGACATCGACGTGGCGGAGCG
GGAAACCCAGCTCAAGCTGTACGAGGAAGAGATCCGTAGGTTGGAGGCGG
AGGGTGCATACCTCCGCAGCCAGCTAACCAGAAGCGTCAACGCAGAGACG
AGGCTGGCGAACGAGCTCAAGAGGACGCAGGAGTCGCTCTTGTTCCTCTC
CGCGTGGGACGAGGAAAAGATTGAGCTCGAGGCGGAGGGTGCATACCTCC
GCAGCCAGCTAACCAGAAGCGTCAACGCAGAGACGAGGCTGGCGAACGAG
CTCAAGAGGACGCAGGAGTCGCTCTTGTTCCTCTCCGCGTGGGACGAGGA
AAAGATTGAGCTCGAGGCGGAGGTTGCAAGCCTCAAGTCCCAGCTGTCTT
CCGCGATCGAGGAAGGAAATAACCGGTTGGAACGCACGCAGCAAGATTTC
AACATAGCCTCCGCGATGGCGGGGCAAAAGACACAACTACGGCTCGCGAG
GTTGCAAGCCTCAAGTCCCAGCTGTCTTCCGCGATCGAGGAAGGAAATAA
CCGGTTGGAACGCACGCAGCAAGATTTCAACATAGCCTCCGCGATGGCGG
GGCAAAAGACACAACTACGGCTCGCGAGGGATGCCGAGAAGATCCGGCTC
GATCTTGAGAAGGGGCTTAACGAGGAGTTCAGGAGCCTGAGGCGAGAGAC
GGAGGTGCTCCGGCGGGAGAAGACGCACAAGGATGCAGAGGTGCGAGCTG
TTTGTTCTAGCGTGGAGAAGAAGAGACTAACGGCATTTGTCCCGGTCTCG
GGATGCCGAGAAGATCCGGCTCGATCTTGAGAAGGGGCTTAACGAGGAGT
TCAGGAGCCTGAGGCGAGAGACGGAGGTGCTCCGGCGGGAGAAGACGCAC
AAGGATGCAGAGGTGCGAGCTGTTTGTTCTAGCGTGGAGAAGAAGAGACT
AACGGCATTTGTCCCGGTCTCG
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