mRNA_E-fasciculatus_F_contig10675.536.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10675.536.1
Unique NamemRNA_E-fasciculatus_F_contig10675.536.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 7.280e-76
Identity = 142/212 (66.98%), Postives = 156/212 (73.58%), Query Frame = 3
Query:  324 IDQPLRRVLPKRSNSDSGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAM-MGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKL 956
            +D P  R  PKRSNS + RLLERFHVCPLLFRE+MGA S  GRG LPT+RPVYRYIFLCPGQAQ L Q+ITGVCYFNMRAQEK  GV+QRSYNAYAVRV+D++ +PT+G M MGGLS GSDKG GTL VVPA +T EGVLCIEMRIRLY DGAMSKLLE LAK                               DTDNP+VQLQGPF+IQKL
Sbjct:  693 VDGPRSRAPPKRSNSSNKRLLERFHVCPLLFRERMGATSAVGRGNLPTTRPVYRYIFLCPGQAQVLPQNITGVCYFNMRAQEKGNGVIQRSYNAYAVRVRDTNPTPTAGGMLMGGLSHGSDKGAGTLIVVPASQTTEGVLCIEMRIRLYHDGAMSKLLERLAK-------------------------------DTDNPAVQLQGPFVIQKL 873          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.810e-71
Identity = 138/212 (65.09%), Postives = 152/212 (71.70%), Query Frame = 3
Query:  324 IDQPLRRVLPKRSNSDSGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAM-MGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKL 956
            ++ P  R  PK SNS+  RLLERFHVCPLLFRE+MGA S  GRG LPT+RPVYRYIFLCPGQAQ  V +ITGVCYFNMRAQEK  GV+QRSYNAYAVRV+D++ +P  G M MGGLS G DKG GTLKVVPA +T EGVLCIEMRIRLY DGAMSKLLE LAK                               DTDNP+VQLQGPF+IQKL
Sbjct: 1385 VEGPRPRAPPKGSNSNDKRLLERFHVCPLLFRERMGATSAVGRGNLPTTRPVYRYIFLCPGQAQ--VLNITGVCYFNMRAQEKGKGVIQRSYNAYAVRVRDTNPTPAVGGMLMGGLSHGGDKGAGTLKVVPASQTTEGVLCIEMRIRLYHDGAMSKLLERLAK-------------------------------DTDNPAVQLQGPFVIQKL 1563          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 3.320e-69
Identity = 137/208 (65.87%), Postives = 147/208 (70.67%), Query Frame = 3
Query:  333 PLRRVLPKRSNSDSGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKL 956
            PLRRVL KRS SDSGR LERFHVCPLLFRE+MGA S+FGRGYLPTSRPVYRYIFLCPGQAQ                    LGVVQRSYNAYAVRVQD++ S T GA+MGGLSQGSDKG GTLKVVPAGETK GVLCIEMRIRLYTDGAMSKLLE+LAK                               D+DNP+V+LQ PF+IQKL
Sbjct: 1167 PLRRVLQKRSTSDSGRSLERFHVCPLLFRERMGAVSSFGRGYLPTSRPVYRYIFLCPGQAQ-------------------ILGVVQRSYNAYAVRVQDTNGSLTPGAIMGGLSQGSDKGQGTLKVVPAGETKAGVLCIEMRIRLYTDGAMSKLLENLAK-------------------------------DSDNPTVRLQAPFVIQKL 1324          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.630e-51
Identity = 115/215 (53.49%), Postives = 137/215 (63.72%), Query Frame = 3
Query:  333 PLRRVLPKRSNSDSGR------LLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKLA 959
            P+   + +R++ + G       LLERF VCPLLFRE+MGAAS  GRG+LP+ RPVYRYIF CP +AQ   Q+++GVCYFNMRAQE+  GVVQR YNA+AVR+ D  E PT G  +   S+ S K P   KVVPA ET EGVLCIEMRIR+Y DGAMSKLLE L+K                               DTDN +VQLQGPFL+ KLA
Sbjct: 1065 PIEMDVAQRADENDGGWGSSTDLLERFQVCPLLFRERMGAASAVGRGHLPSKRPVYRYIFSCPAKAQAQAQAVSGVCYFNMRAQEEGKGVVQRPYNAFAVRLLDV-EPPTPGGRVA-WSKTSAKLP---KVVPAEETTEGVLCIEMRIRMYHDGAMSKLLEKLSK-------------------------------DTDNVAVQLQGPFLVNKLA 1243          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.860e-51
Identity = 111/200 (55.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:  360 SNSDSGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKLA 959
            SN+D   L ERF VCPLLFRE+MGAAS  GRG+LP+ RPVYRYIF CP   Q   Q+++GVCYFNMRAQE+  GVVQR+YNA+AVR+ D  E PT G  +   ++G  K P   K+VPAGET EG+LCIEMRIR+Y DGAMSKLLE L++                               DTDN +VQLQGPFLI KLA
Sbjct: 1089 SNTD---LFERFQVCPLLFRERMGAASAVGRGHLPSKRPVYRYIFSCPANGQAQAQAVSGVCYFNMRAQEEGKGVVQRAYNAFAVRLLDV-EPPTPGGRVA-WTKGFAKLP---KIVPAGETTEGILCIEMRIRMYHDGAMSKLLEKLSQ-------------------------------DTDNAAVQLQGPFLINKLA 1249          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.950e-48
Identity = 107/195 (54.87%), Postives = 122/195 (62.56%), Query Frame = 3
Query:  372 SGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*GRTRAFTFSDTDNPSVQLQGPFLIQKL 956
            S +LL+RFHVCPLLFREKMG  S  GRG L T RP YRYIF CPGQAQ LV++I GVC+F+M  Q    GV+QR+YNAYAVRVQ        G + G    GS KG    +VVPA ET EGVLCIEMRIRLY DGAMS+LLE L+K                               DTDNP++QLQGPF+I KL
Sbjct:  922 SKKLLQRFHVCPLLFREKMGTDSPIGRGLLFTKRPTYRYIFSCPGQAQALVETIHGVCHFHMPGQVPGKGVIQRAYNAYAVRVQ--------GFVDG--KDGSGKGATPPRVVPAQETSEGVLCIEMRIRLYHDGAMSQLLEKLSK-------------------------------DTDNPAIQLQGPFIITKL 1075          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: A0A6H5JUS3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.860e-36
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 3
Query:  333 PLRRVLPKRSNSDSGRLLERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSIT-GVCYFNMRAQEK 572
            P RRVLPKRS SDSGR L+RFHVCPLLFRE MGA S FGRGYLPTSRPVYRY+FLCPG+AQ L QSIT GVCYFNMRAQEK
Sbjct:  220 PPRRVLPKRSTSDSGRSLDRFHVCPLLFREMMGAVSAFGRGYLPTSRPVYRYMFLCPGRAQILAQSITTGVCYFNMRAQEK 300          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: A0A6H5K5R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.770e-26
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 3
Query:  639 PTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKI 812
            PT G MMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAK+
Sbjct:   25 PTPGVMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKV 82          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.710e-23
Identity = 89/241 (36.93%), Postives = 111/241 (46.06%), Query Frame = 3
Query:  384 LERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMR-AQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAK------IFGVSNENDHLHTSGDVCSQ--------------E*GRTRAFT-----------------------------FSDTDNPSVQLQGPFLIQKL 956
            L  FHVCPLL  EK+      G G     RPV++++F C G A+ LV S+ GVC+F MR AQE  + VV+R+YNA+AVRV D                      G  +VVPA E+ EGVLC+EMR RLY DG MS LL  L K      IF  S+ + H H    V ++                G T AF                                + DNP+VQLQGPFL  +L
Sbjct:  581 LHLFHVCPLLLHEKL----CDGGG-----RPVHKFVFACLGTAEALVGSMEGVCHFKMRLAQEAGMIVVERAYNAFAVRVLDEE--------------------GKRRVVPALESSEGVLCVEMRARLYPDGLMSGLLAQLVKVVPTVAIFCHSSTHKHHHMFISVSNKLSQSPTGDRPTNGSTDGSTYAFDRLFWEERSIRETPTIRAPCSFCGWVRGGGHQNLDNPAVQLQGPFLQHRL 792          
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.880e-23
Identity = 70/156 (44.87%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  384 LERFHVCPLLFREKMGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMR-AQEKALGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGETKEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHT 848
            L  FHVCPLL  EK+      G G     RPV++++F CPG A  LV S+ GVC+F MR  QE  + VV+R+YNA+AVRV D                      G  +VVPA E+ EGVLC+EMRIRLY DG MS LL  L K+        H  T
Sbjct:  402 LHLFHVCPLLLHEKL----CDGGG-----RPVHKFVFACPGTAAALVGSMEGVCHFKMRLTQEAGMTVVERAYNAFAVRVLDEE--------------------GKRRVVPALESSEGVLCVEMRIRLYPDGLMSGLLARLIKVVPTVAITGHCST 528          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10675.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FX04_ECTSI7.280e-7666.98Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE1.810e-7165.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI3.320e-6965.87Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI2.630e-5153.49Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI4.860e-5155.50Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FQW8_ECTSI2.950e-4854.87Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JUS3_9PHAE5.860e-3685.19Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5K5R1_9PHAE6.770e-2694.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX59_9PHAE1.710e-2336.93Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5KC42_9PHAE3.880e-2344.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10675contigE-fasciculatus_F_contig10675:355..3284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D7FX04
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_000500.1
Exons5
Model size961
Cds size450
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.5921786-UTR-E-fasciculatus_F_contig10675:354..7791622927565.5921786-UTR-E-fasciculatus_F_contig10675:354..779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 355..779 +
1695995598.7307065-UTR-E-fasciculatus_F_contig10675:354..7791695995598.7307065-UTR-E-fasciculatus_F_contig10675:354..779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 355..779 +
1622927565.6522183-UTR-E-fasciculatus_F_contig10675:2684..27111622927565.6522183-UTR-E-fasciculatus_F_contig10675:2684..2711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 2685..2711 +
1695995598.7829032-UTR-E-fasciculatus_F_contig10675:2684..27111695995598.7829032-UTR-E-fasciculatus_F_contig10675:2684..2711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 2685..2711 +
1622927565.6641905-UTR-E-fasciculatus_F_contig10675:3225..32841622927565.6641905-UTR-E-fasciculatus_F_contig10675:3225..3284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 3226..3284 +
1695995598.7973459-UTR-E-fasciculatus_F_contig10675:3225..32841695995598.7973459-UTR-E-fasciculatus_F_contig10675:3225..3284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10675 3226..3284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.6028585-CDS-E-fasciculatus_F_contig10675:779..8751622927565.6028585-CDS-E-fasciculatus_F_contig10675:779..875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 780..875 +
1695995598.744455-CDS-E-fasciculatus_F_contig10675:779..8751695995598.744455-CDS-E-fasciculatus_F_contig10675:779..875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 780..875 +
1622927565.6165705-CDS-E-fasciculatus_F_contig10675:1070..11271622927565.6165705-CDS-E-fasciculatus_F_contig10675:1070..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 1071..1127 +
1695995598.754309-CDS-E-fasciculatus_F_contig10675:1070..11271695995598.754309-CDS-E-fasciculatus_F_contig10675:1070..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 1071..1127 +
1622927565.627475-CDS-E-fasciculatus_F_contig10675:2119..23501622927565.627475-CDS-E-fasciculatus_F_contig10675:2119..2350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 2120..2350 +
1695995598.763906-CDS-E-fasciculatus_F_contig10675:2119..23501695995598.763906-CDS-E-fasciculatus_F_contig10675:2119..2350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 2120..2350 +
1622927565.6404085-CDS-E-fasciculatus_F_contig10675:2618..26841622927565.6404085-CDS-E-fasciculatus_F_contig10675:2618..2684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 2619..2684 +
1695995598.7732868-CDS-E-fasciculatus_F_contig10675:2618..26841695995598.7732868-CDS-E-fasciculatus_F_contig10675:2618..2684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10675 2619..2684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10675.536.1prot_E-fasciculatus_F_contig10675.536.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10675 780..2684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10675.536.1

>prot_E-fasciculatus_F_contig10675.536.1 ID=prot_E-fasciculatus_F_contig10675.536.1|Name=mRNA_E-fasciculatus_F_contig10675.536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp
MGAASTFGRGYLPTSRPVYRYIFLCPGQAQNLVQSITGVCYFNMRAQEKA
LGVVQRSYNAYAVRVQDSSESPTSGAMMGGLSQGSDKGPGTLKVVPAGET
KEGVLCIEMRIRLYTDGAMSKLLESLAKIFGVSNENDHLHTSGDVCSQE*
back to top

mRNA from alignment at E-fasciculatus_F_contig10675:355..3284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10675.536.1 ID=mRNA_E-fasciculatus_F_contig10675.536.1|Name=mRNA_E-fasciculatus_F_contig10675.536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10675:355..3284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACCTTATGACAGAATCCTTGCGTAGGCTCATGCTATTTCGGACGCA GAGTGCGGGGCATGACTAACGACGAGAGGGGATCGTTGCAAGAGATGGGA AAACGATCAGCTACTAATCTGTTTTGGTAGGCTTACATCGAACCCCTAAG GCAAGGATTGCGCAGAAGATGGGGGAAACGAGATGTCGATTCATGGCCCG GCGAGGAGCGATGCCGAGGGTAGTCACCAGAAGAGCAAGCAAACACGTTG CGAAGGCTCCTGCTGCCCAGTCCTACTAACAAGTGCGTAAAAGCCTCTTT CTCCTCCGTCCTGATATTGTTCTATCGATCAGCCACTTCGCCGTGTCCTG CCGAAGAGGAGCAACTCTGACAGCGGGCGGCTCCTGGAGCGTTTCCACGT ATGCCCCCTGCTTTTCCGGGAGAAAATGGGGGCAGCCAGCACGTTTGGGC GAGGCTACCTGCCCACCTCCCGCCCGGTGTACCGGTACATATTCCTGTGC CCCGGCCAGGCTCAGAATCTGGTATGTGTTGTTCGATATTGTTGTTGTTG TTGTTGTTGTTGTTGTATGGATACACGACCCGGCGATCTACGTGATGGGT ACTCCCTATGCACAAGCATCCTCAGGCATTGGACTGCCTCCCGCCCGCCC ATGCGTCGTTGCTCCAACTGCTACTGCGTGGGATCGGCGGTGCGGGTCAA CAATGCACCACCTCAGGTCCAGTCGATCACCGGGGTCTGCTACTTCAACA TGCGAGCTCAGGAGAAAGCACTTGTAAGCCCCGGTCGGCAGCGCAGTACA CGCAACCAACGCATCCGACTTTTTTTTTTTTTTTCGACATTAGTGTAGAT CAGTCTACAATACTGTGGCTTTCTGTCGGCGGGAAATCGCGTAAATTTGC TCTGTCGGCTCCTGCCCGGGAAGGCTTCCCTTTCCGCCTCTCAAACGTGT GGGTGACCCGGACAGGCAGCAACTCCACTGCCCACGCCGGGAGATATTGT GCTTGGATAACCTTTGGAAACCGCCCCAATGTTGTAGATATGAGATATCG CGAGCTGAAAGAACGATGCGTCATCTTTAGGGTTCAGTTTCAAGTTTGTT GAGAAACTATCGTAAGTTTGATCCACGGACAGAGAAAATGTGTGTCTTTG TTTTGTTATGATCGCCGGTTGCTCGCATGCACCGTCTTTGGTTCGGTGAT GGTCAACCCCCCGGTATAGAAAAATGTTCGTCGCGCTCAGTTCAAGGTCC TGAGGACTCCGTCGTCAATCGACACGATCAGTCTGCCTTTGTGTATGGAC AGATGAAGCAGGCGGCTAGAGACGAGTTGATCGAAGCCGTTCGGAGCAAA TGTCTGCAACAGGCGTGCATTCCTGCCGGGAGCAAAACGAAATGCCCCGG GGTGTGTTCAAGATTAAGAAACGCTGGCGTACGCCAAGCCCCGCCTTGTC GGGAACAAGGAGAATAATCTCCCAGGTGGCAGTGGACCCCCCAATCAGAT GACAGCGACTCCAGGGCAATCACTCAGTGGTCGCGCTCCGGCCGAAAATG CGCCGTCCTGGCCAAAGCATTTTACGAAGCATATTCAATTTCTGCACTTT CCTGTAGACAGAACAGTACAGCATCCACCACAGCATTATCATGTTCGATA CACGCACACCCCCCACGATCATTTTTTTCCACCATGCTCACAACGCATGG TCCGTCACAAAACCAACCAACCCTCAACGTCGATTTGTTTTCCACTGTAT TGGAATGAACGGTAGGGAGTGGTCCAGCGATCGTACAACGCGTACGCCGT GAGGGTGCAGGACTCCAGCGAGTCCCCAACCTCGGGAGCGATGATGGGGG GGCTCTCACAAGGGAGCGACAAGGGACCGGGGACGCTCAAGGTTGTCCCC GCTGGCGAGACAAAGGAGGGGGTGCTGTGCATAGAAATGCGCATCAGGCT ATACACTGACGGCGCCATGAGCAAGCTGCTCGAGAGTCTCGCCAAGGTGA AATTATGGGCGGGGGTGGTTGGGGACGTTGATATGCGTCGATGCTTGTCA ATTCCTCGCTTCTTTACCCCCGTCAACTATGACTAGCACTCTTTTCGTGA CTCCGGCGGAGATAGGTTTTGTCCGCAGGCTATCTCTCCGCCGTGCGCCG TAAACACCCTCTGCCGTGGTTCCCTCGTCGGCAGTGAATCGAGTACTGCG ACAATTGTATGGCACAGATGCCTTTACAACACGGGGGCCGATCCGTTGCC GTATTTGGTGTCAGATTTTTGGTGTTTCCAACGAAAACGACCACCTACAC ACTTCGGGAGATGTATGCTCGCAGGAGTGAGGAAGGACGAGGGCGTTCAC CTTCTCGGTACGTGTTGCGTCTTGGACGGGTGTATGCTCTTCAACGCTTG TGTTTTATGGCGCGATGGCTGTATACTTTGTAGCACAGCTGCACGTGATG AATCCCTTGAGACGAAGCCATCGGTGATGGTGAACTGCAGCAAATGCCGA TGGTTGTAACTCGAGAACGAGTTTGCAGGTAAAAGGCCCAAGCACTTCCG CCGTTTTTGGTAACTGTTAGTTGCTCCACAACAACAACATGGCCCGGATC CTCTCGTAGGGTGCGACGAACCGAAGGTAGCCAGGTCTGGAGGGAGGTAC TAATTGTTCTTGGAGGGTCAGAGTCGAACGCGGTGTCACCACGAAAGGTT GACAGACGGTCGAAAAACATAGTGAAACTTGGCTGGAATACGACATACGC GGGGATCTGTATCTAGAGTTGTGACGAGGACGGTACGAAGCAACGTTGTT GGAACTGGCGGGAACAGGGGTCAAACATGATTGACGATCTCATCTTTTTG TGCGCCGCACGACATAAACAGGACACGGACAACCCGTCGGTGCAGCTACA AGGCCCCTTCCTGATCCAGAAACTAGCCCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10675:355..3284+

>mRNA_E-fasciculatus_F_contig10675.536.1 ID=mRNA_E-fasciculatus_F_contig10675.536.1|Name=mRNA_E-fasciculatus_F_contig10675.536.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10675:355..3284+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGCAGCCAGCACGTTTGGGCGAGGCTACCTGCCCACCTCCCGCCC
GGTGTACCGGTACATATTCCTGTGCCCCGGCCAGGCTCAGAATCTGATGG
GGGCAGCCAGCACGTTTGGGCGAGGCTACCTGCCCACCTCCCGCCCGGTG
TACCGGTACATATTCCTGTGCCCCGGCCAGGCTCAGAATCTGGTCCAGTC
GATCACCGGGGTCTGCTACTTCAACATGCGAGCTCAGGAGAAAGCACTTG
TCCAGTCGATCACCGGGGTCTGCTACTTCAACATGCGAGCTCAGGAGAAA
GCACTTGGAGTGGTCCAGCGATCGTACAACGCGTACGCCGTGAGGGTGCA
GGACTCCAGCGAGTCCCCAACCTCGGGAGCGATGATGGGGGGGCTCTCAC
AAGGGAGCGACAAGGGACCGGGGACGCTCAAGGTTGTCCCCGCTGGCGAG
ACAAAGGAGGGGGTGCTGTGCATAGAAATGCGCATCAGGCTATACACTGA
CGGCGCCATGAGCAAGCTGCTCGAGAGTCTCGCCAAGGGAGTGGTCCAGC
GATCGTACAACGCGTACGCCGTGAGGGTGCAGGACTCCAGCGAGTCCCCA
ACCTCGGGAGCGATGATGGGGGGGCTCTCACAAGGGAGCGACAAGGGACC
GGGGACGCTCAAGGTTGTCCCCGCTGGCGAGACAAAGGAGGGGGTGCTGT
GCATAGAAATGCGCATCAGGCTATACACTGACGGCGCCATGAGCAAGCTG
CTCGAGAGTCTCGCCAAGATTTTTGGTGTTTCCAACGAAAACGACCACCT
ACACACTTCGGGAGATGTATGCTCGCAGGAGTGAATTTTTGGTGTTTCCA
ACGAAAACGACCACCTACACACTTCGGGAGATGTATGCTCGCAGGAGTGA
back to top