mRNA_E-fasciculatus_F_contig10673.534.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10673.534.1
Unique NamemRNA_E-fasciculatus_F_contig10673.534.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10673.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10673contigE-fasciculatus_F_contig10673:123..1599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_000380.1
Exons1
Model size1477
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10673.534.1prot_E-fasciculatus_F_contig10673.534.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10673 355..714 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.3035572-UTR-E-fasciculatus_F_contig10673:122..3541622927565.3035572-UTR-E-fasciculatus_F_contig10673:122..354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10673 123..354 +
1695995598.6345873-UTR-E-fasciculatus_F_contig10673:122..3541695995598.6345873-UTR-E-fasciculatus_F_contig10673:122..354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10673 123..354 +
1622927565.4676151-UTR-E-fasciculatus_F_contig10673:714..15991622927565.4676151-UTR-E-fasciculatus_F_contig10673:714..1599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10673 715..1599 +
1695995598.6516144-UTR-E-fasciculatus_F_contig10673:714..15991695995598.6516144-UTR-E-fasciculatus_F_contig10673:714..1599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10673 715..1599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.4263313-CDS-E-fasciculatus_F_contig10673:354..7141622927565.4263313-CDS-E-fasciculatus_F_contig10673:354..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10673 355..714 +
1695995598.6432998-CDS-E-fasciculatus_F_contig10673:354..7141695995598.6432998-CDS-E-fasciculatus_F_contig10673:354..714Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10673 355..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10673.534.1

>prot_E-fasciculatus_F_contig10673.534.1 ID=prot_E-fasciculatus_F_contig10673.534.1|Name=mRNA_E-fasciculatus_F_contig10673.534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
MLSVARGFNSHPFLRMLAHLLPRACGCSFLLCFFITYRVGIPRGPFIVLA
CMSGCTRMHCVFFQCRYLLETTFKIFRAEFSWNVLEVASESACQKTPNFA
GSGRKIRPRRGAHPSIIAI*
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mRNA from alignment at E-fasciculatus_F_contig10673:123..1599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10673.534.1 ID=mRNA_E-fasciculatus_F_contig10673.534.1|Name=mRNA_E-fasciculatus_F_contig10673.534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1477bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10673:123..1599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGTAGCTTGCTTGTCCGTTGTCATGCTGTGGCTTTTCGCCAAGGAGCG
TTGCGCTTGTGGGATGCGGCTAGCGTGCCGTACGCTTTTCCTTCAACCCA
CAGTTGCTTTTCCTGGCTTTCGGGGTAGTTGCACTCGATGACCAGTCTGC
CACACCGCTTCCTTGATTTCTCAGCTTAGTCTTGTCGTGCTTGACCTGTG
GCAGCTGTAGCTCAGAGCGTCGCGCGGCGGCAATGCTCAGCGTTGCTCGT
GGTTTCAATTCACACCCATTCTTACGCATGCTCGCGCACCTTCTCCCACG
TGCGTGCGGATGTTCGTTTTTGTTGTGCTTCTTTATTACCTATCGCGTAG
GGATCCCGCGCGGTCCGTTCATTGTTTTGGCGTGTATGTCTGGGTGTACT
CGTATGCATTGTGTCTTTTTTCAGTGCCGCTATCTACTAGAAACGACCTT
TAAAATTTTCAGAGCTGAATTTTCCTGGAACGTTCTTGAAGTTGCCAGTG
AGAGTGCGTGTCAAAAAACTCCCAATTTTGCGGGCTCGGGGCGCAAGATT
AGGCCACGTCGGGGCGCCCACCCCAGTATAATAGCCATATAATAGCCAGC
CTGGGTCGACCGGGCTGCTGTGCCACACGCAGCAGGTAGATATATTCTTT
GTTTCTTACATGGTGGGGATGACTAACGATGAGTAGTCTCCCACAAAAAG
CGCCCCCTTTTATCGTCGTGCATTCATTGGTATATTTTCGATGGTTGCCT
GTGTTAGTGTTATTTTGAGACAGGCTGACTGCTGTGAAGGACACTTGACT
CAAAGTGTCTGGCGTCGGCAGGTCGATAGTTGGGCGAGCCCTTTGAAATT
GGTACGTAGATTGTTAGCTGAGGTTAGAGATAGGTTAAAATTTGCGCGCT
GTTGTAGCCCTCGTTACCGTGCGTCGTCTTGCTGACTTTTCCGCTTTCCT
TCTTGGAGTAGTAGTAGCAGGCATGACGTTTGTTGGCGGTGGGGTGGTTG
ATATGGCGAGGCAGCGCATAATATTTAGTGTACATCGCACGAGTTCACGG
CTGAGAAACACGGCAGGCAACATATTACTGTGGAGAAAGAGAACGAGAGA
GAGAGAGAGAGAGAGATTTTGTCGGGAGGGAGTGCCGATGGTCCGAATTA
GTTGGCCTTGTTGACGTTCAGGGACGGGATGTATGTGCAGGAGGTCATAC
ATGCATGCGTCTCCCGTGTAGCTAAGGAGTAATGCGAGAACTGTAGGGAT
CACAAAGGTGGAGTACATCACAACGAGCAGGGGGTAGAAGTTAGAAAGAA
GGGCCGGTCGTGCGAAGCTCTGCAGATTGGGGTGTATCGACGTGTGTGTG
CGAGTTTTTTTCGCAACACTACTGTGCGGCAGTAGTAATCGTTGTACCGC
AGAAACTCTGCGTTGAAATGCTTGAACCAGCGTTTTTTTTTATTTTTCCC
TTCCTATTCTCGAGAAAGGAAAGCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10673:123..1599+

>mRNA_E-fasciculatus_F_contig10673.534.1 ID=mRNA_E-fasciculatus_F_contig10673.534.1|Name=mRNA_E-fasciculatus_F_contig10673.534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10673:123..1599+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAGCGTTGCTCGTGGTTTCAATTCACACCCATTCTTACGCATGCT
CGCGCACCTTCTCCCACGTGCGTGCGGATGTTCGTTTTTGTTGTGCTTCT
TTATTACCTATCGCGTAGGGATCCCGCGCGGTCCGTTCATTGTTTTGGCG
TGTATGTCTGGGTGTACTCGTATGCATTGTGTCTTTTTTCAGTGCCGCTA
TCTACTAGAAACGACCTTTAAAATTTTCAGAGCTGAATTTTCCTGGAACG
TTCTTGAAGTTGCCAGTGAGAGTGCGTGTCAAAAAACTCCCAATTTTGCG
GGCTCGGGGCGCAAGATTAGGCCACGTCGGGGCGCCCACCCCAGTATAAT
AGCCATATAAATGCTCAGCGTTGCTCGTGGTTTCAATTCACACCCATTCT
TACGCATGCTCGCGCACCTTCTCCCACGTGCGTGCGGATGTTCGTTTTTG
TTGTGCTTCTTTATTACCTATCGCGTAGGGATCCCGCGCGGTCCGTTCAT
TGTTTTGGCGTGTATGTCTGGGTGTACTCGTATGCATTGTGTCTTTTTTC
AGTGCCGCTATCTACTAGAAACGACCTTTAAAATTTTCAGAGCTGAATTT
TCCTGGAACGTTCTTGAAGTTGCCAGTGAGAGTGCGTGTCAAAAAACTCC
CAATTTTGCGGGCTCGGGGCGCAAGATTAGGCCACGTCGGGGCGCCCACC
CCAGTATAATAGCCATATAA
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