mRNA_E-fasciculatus_F_contig1067.530.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1067.530.1
Unique NamemRNA_E-fasciculatus_F_contig1067.530.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: D8LE27_ECTSI (Autophagy-related protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE27_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.890e-48
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS
Sbjct: 2137 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 2223          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A835YJZ3_9STRA (Autophagy-related protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.180e-23
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            DSLE AY +L++EV  AA TI+AIPYE++EE+ G     Y R+V RALP+AVLRPV+GA+EAVS  LLGFRN + P  +KEEE +W 
Sbjct:  275 DSLEQAYVSLSREVLSAAHTIVAIPYEEREELGG-----YARTVVRALPIAVLRPVIGATEAVSFALLGFRNTLQPGKKKEEEAQWQ 356          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A4D9DDJ8_9STRA (ATG_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDJ8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-19
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRW 258
            + LEHAYDTL+K    AA TIIA+P ++ E   GP G   VR+V RALP+AV++PVVG SEA+S TLLG RN + P  R+EEE  W
Sbjct:  528 EGLEHAYDTLSKGFSTAAHTIIAVPIQEMERS-GPQGS--VRAVIRALPIAVVKPVVGVSEALSITLLGVRNKLDPGSRREEEELW 610          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: W7TWI8_9STRA (Autophagy regulatory protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWI8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.340e-19
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRW 258
            + LEHAYDTL+K     A TIIA+P ++ E   GP G   VR+V RALP+AV++PVVG SEA+S TLLG RN + P  R+EEE  W
Sbjct:  436 EGLEHAYDTLSKGFSTVAHTIIAVPIQEMERS-GPQGS--VRAVIRALPIAVVKPVVGVSEALSITLLGVRNKLDPGSRREEEELW 518          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A165FHK4_9BASI (Autophagy-related protein 2 n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165FHK4_9BASI)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            + ++ AY +L+K V  AAQTI+A+P E  E    P+G+  VR+V RA+P+AVL+P++GA+EAVS TLLG RN M P MR E E ++ 
Sbjct: 1767 EGVQAAYKSLSKNVHSAAQTILAVPMEVYER---PNGQGPVRTVVRAVPIAVLKPMIGATEAVSKTLLGIRNSMDPSMRLEHEGKYK 1850          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A024G2E4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2E4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.820e-16
Identity = 42/87 (48.28%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            + LE AYD+LA+E+ +AA+TI+AIP  + ++  G HG  YVRSV RA+PVA+LRP++GA+EA+S  L+G RN + P M+++ + ++ 
Sbjct: 2288 EGLEQAYDSLARELHIAAKTIVAIPLVEYKKT-GSHG--YVRSVIRAVPVALLRPMIGATEAMSKALIGVRNAVDPEMKEDIDNKFK 2371          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A167PZC1_CALVF (Uncharacterized protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167PZC1_CALVF)

HSP 1 Score: 81.6 bits (200), Expect = 3.830e-16
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            + ++ AY +L++ V  AAQTI+A+P E  E    P+G+  VR+V RA+P+AVL+P++GA+EAVS TLLG RN M P MR E E ++ 
Sbjct: 1747 EGVQAAYKSLSRNVHSAAQTILAVPMEVYER---PNGQGPVRTVVRAVPIAVLKPMIGATEAVSKTLLGIRNSMDPSMRLETEGKYK 1830          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: F0X170_9STRA (Autophagy-related protein 2 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X170_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.180e-16
Identity = 41/87 (47.13%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            + LE AYD+LA+E+ +AA+TI+AIP  + ++  G HG  YVRSV RA+PVA+LRP++GA+EA+S  L+G RN + P ++++ + ++ 
Sbjct: 2323 EGLEQAYDSLARELHIAAKTIVAIPLVEYKKT-GSHG--YVRSVIRAVPVALLRPMIGATEAMSKALIGVRNAVDPELKEDIDNKFK 2406          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A7S3H9P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9P4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.930e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 LEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS 261
            LE AY ++++EV  AA+T+IAIP  +     GP G  Y++SV RA PVAVLRPV G  E VS T+LG RN + P  R +EE  W+
Sbjct:  154 LEQAYGSVSREVASAAETVIAIPIREYVHT-GPGG--YLKSVIRAFPVAVLRPVAGVMEGVSYTMLGLRNNLDPEARIQEEDMWN 235          
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Match: A0A2D4CBH7_PYTIN (Autophagy-related protein 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBH7_PYTIN)

HSP 1 Score: 77.8 bits (190), Expect = 8.200e-15
Identity = 41/86 (47.67%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPVAVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRW 258
            + L  AYD++++E+ VAA+TI+A+P  + ++  G  G  YVRSV RA+PVAVLRP++GASEAVS  L+G RN + P ++++ E ++
Sbjct:  450 EGLYQAYDSISRELHVAAKTIVAVPLVEYKKT-GSQG--YVRSVIRAVPVAVLRPMIGASEAVSKALIGVRNAVDPELKEDVENKF 532          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1067.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE27_ECTSI3.890e-48100.00Autophagy-related protein 2 n=2 Tax=Ectocarpus Tax... [more]
A0A835YJZ3_9STRA2.180e-2359.77Autophagy-related protein 2 n=1 Tax=Tribonema minu... [more]
A0A4D9DDJ8_9STRA2.840e-1956.98ATG_C domain-containing protein n=2 Tax=Monodopsid... [more]
W7TWI8_9STRA9.340e-1955.81Autophagy regulatory protein (Fragment) n=1 Tax=Na... [more]
A0A165FHK4_9BASI1.100e-1650.57Autophagy-related protein 2 n=1 Tax=Calocera corne... [more]
A0A024G2E4_9STRA2.820e-1648.28Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A167PZC1_CALVF3.830e-1649.43Uncharacterized protein n=1 Tax=Calocera viscosa (... [more]
F0X170_9STRA7.180e-1647.13Autophagy-related protein 2 n=1 Tax=Albugo laibach... [more]
A0A7S3H9P4_9STRA6.930e-1550.59Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2D4CBH7_PYTIN8.200e-1547.67Autophagy-related protein 2 n=1 Tax=Pythium insidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1067contigE-fasciculatus_F_contig1067:3939..4832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue4.9e-41
Seed eggNOG ortholog2880.D8LE27
KEGG koko:K17906
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG2993@1,KOG2993@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.765751-CDS-E-fasciculatus_F_contig1067:3938..39831622927564.765751-CDS-E-fasciculatus_F_contig1067:3938..3983Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1067 3939..3983 +
1695995598.3152018-CDS-E-fasciculatus_F_contig1067:3938..39831695995598.3152018-CDS-E-fasciculatus_F_contig1067:3938..3983Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1067 3939..3983 +
1622927564.778353-CDS-E-fasciculatus_F_contig1067:4613..48321622927564.778353-CDS-E-fasciculatus_F_contig1067:4613..4832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1067 4614..4832 +
1695995598.3330579-CDS-E-fasciculatus_F_contig1067:4613..48321695995598.3330579-CDS-E-fasciculatus_F_contig1067:4613..4832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1067 4614..4832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1067.530.1prot_E-fasciculatus_F_contig1067.530.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1067 3939..4832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1067.530.1

>prot_E-fasciculatus_F_contig1067.530.1 ID=prot_E-fasciculatus_F_contig1067.530.1|Name=mRNA_E-fasciculatus_F_contig1067.530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
DSLEHAYDTLAKEVQVAAQTIIAIPYEDQEEVVGPHGRSYVRSVARALPV
AVLRPVVGASEAVSCTLLGFRNYMAPVMRKEEEMRWS*
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mRNA from alignment at E-fasciculatus_F_contig1067:3939..4832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1067.530.1 ID=mRNA_E-fasciculatus_F_contig1067.530.1|Name=mRNA_E-fasciculatus_F_contig1067.530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1067:3939..4832+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATAGCCTCGAGCACGCGTACGATACGCTTGCGAAGGAGGTGCAGGTATG TTTAGCGAATAACATTGAGTGTGAGTGTATGGTGGTCCGTACCCTGCTTT GCAGTTGGTGTGGTTTGGAGTTTACCTCTTGATTGCATTTGCGTTGCTTG CTTTGGGCTCTCACATTTAGGAACTTACCATTGACTAGGCGTGTGCAACC ACCGACAGTCAATCACTGGTAAGTGGAGTCTTTTATGTACGATCCCGTTG GAGTTCCTCTCCCAATTACCCCAGACCAACTATGCGCACCAGTTCCTTCT AGGTTTAGATTGGATCATTCAGCGAGCGAGGGAATTCGCGTTGCATGTTC TTCCGCCCTACCCACTTTTGTGGGTAAGCGTGGAGGCATGATTATTGTAA AAGGTTGTGGAGTGGCATCAGCGGCAAGGAGCCAGTCATGCCTCTAACCG GACTGATGTACACACTTCTTGCAAGACCCTGCTGCCCCGTCCCGCGAGGT CAAGGTTTTTACCTTCGGACGCGTTGCATGCCCGTACAACGAAGCGCACA GCCCGGCTCGGTAACCGACCATTTCGCAATAGGGACTCAGTGGATACGCC TGCAAGCAGTTCCTAGCTCGTATCTATCTTGACGTCATGTAATTCTTTCT GCTCCATCTTTGGTTCCTCCGACAGGTCGCAGCACAGACCATCATCGCCA TTCCTTACGAGGATCAGGAGGAGGTGGTAGGCCCGCATGGGAGGTCGTAC GTGCGCTCCGTTGCGCGAGCACTTCCAGTTGCGGTATTGCGACCAGTTGT TGGTGCGAGCGAGGCGGTGTCTTGCACCTTGCTAGGATTCCGCAACTACA TGGCACCCGTTATGCGGAAGGAGGAAGAGATGAGGTGGTCATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1067:3939..4832+

>mRNA_E-fasciculatus_F_contig1067.530.1 ID=mRNA_E-fasciculatus_F_contig1067.530.1|Name=mRNA_E-fasciculatus_F_contig1067.530.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1067:3939..4832+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATAGCCTCGAGCACGCGTACGATACGCTTGCGAAGGAGGTGCAGGATAG
CCTCGAGCACGCGTACGATACGCTTGCGAAGGAGGTGCAGGTCGCAGCAC
AGACCATCATCGCCATTCCTTACGAGGATCAGGAGGAGGTGGTAGGCCCG
CATGGGAGGTCGTACGTGCGCTCCGTTGCGCGAGCACTTCCAGTTGCGGT
ATTGCGACCAGTTGTTGGTGCGAGCGAGGCGGTGTCTTGCACCTTGCTAG
GATTCCGCAACTACATGGCACCCGTTATGCGGAAGGAGGAAGAGATGAGG
TGGTCATAGGTCGCAGCACAGACCATCATCGCCATTCCTTACGAGGATCA
GGAGGAGGTGGTAGGCCCGCATGGGAGGTCGTACGTGCGCTCCGTTGCGC
GAGCACTTCCAGTTGCGGTATTGCGACCAGTTGTTGGTGCGAGCGAGGCG
GTGTCTTGCACCTTGCTAGGATTCCGCAACTACATGGCACCCGTTATGCG
GAAGGAGGAAGAGATGAGGTGGTCATAG
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