mRNA_E-fasciculatus_F_contig10665.528.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10665.528.1
Unique NamemRNA_E-fasciculatus_F_contig10665.528.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10665.528.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.830e-37
Identity = 80/111 (72.07%), Postives = 85/111 (76.58%), Query Frame = 1 
Query:   28 GDFPCADLSGSNGTEIQQHKQEQQPLPSPPKTSGRKRSLPQTCSWDNLGPKALSEISASLLAGGWDGSGNSSMSIS-SPQFLPXXXXXXXXXXXGPSANSVAAAPTASPCS 357
            GDF CADLSGSNGTE QQ  ++QQPLPSPPKTSGRKRSLPQT +WDNLGPKALSEISASLLAGGWDG  NSS S+S SP FL            GPSA+SVA   T SPCS
Sbjct:   47 GDFSCADLSGSNGTETQQQYKQQQPLPSPPKTSGRKRSLPQTSNWDNLGPKALSEISASLLAGGWDGGVNSSYSVSTSPHFL---GPPAGAGGGGPSADSVAVPHTTSPCS 154
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10665.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE4.830e-3772.07BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10665contigE-fasciculatus_F_contig10665:2163..2519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927564.6513638-CDS-E-fasciculatus_F_contig10665:2162..25191622927564.6513638-CDS-E-fasciculatus_F_contig10665:2162..2519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10665 2163..2519 +
1695995598.26354-CDS-E-fasciculatus_F_contig10665:2162..25191695995598.26354-CDS-E-fasciculatus_F_contig10665:2162..2519Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10665 2163..2519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10665.528.1prot_E-fasciculatus_F_contig10665.528.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10665 2163..2519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10665.528.1

>prot_E-fasciculatus_F_contig10665.528.1 ID=prot_E-fasciculatus_F_contig10665.528.1|Name=mRNA_E-fasciculatus_F_contig10665.528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
MRTFLLLYSGDFPCADLSGSNGTEIQQHKQEQQPLPSPPKTSGRKRSLPQ
TCSWDNLGPKALSEISASLLAGGWDGSGNSSMSISSPQFLPPPPAAAAAA
AAGPSANSVAAAPTASPCS
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mRNA from alignment at E-fasciculatus_F_contig10665:2163..2519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10665.528.1 ID=mRNA_E-fasciculatus_F_contig10665.528.1|Name=mRNA_E-fasciculatus_F_contig10665.528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=357bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10665:2163..2519+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTACGTTTCTGTTGCTCTACAGCGGCGACTTCCCATGCGCAGACCT
GAGCGGCAGCAACGGGACGGAGATACAACAGCACAAGCAGGAGCAGCAGC
CTCTCCCCTCTCCCCCCAAAACAAGCGGGCGGAAGCGGAGCTTGCCGCAG
ACGTGCAGCTGGGACAACCTCGGCCCGAAGGCCCTCTCGGAGATCAGCGC
CAGCCTGCTCGCCGGCGGCTGGGATGGCAGCGGTAACAGCAGCATGAGCA
TCAGCAGCCCGCAATTCCTGCCCCCCCCCCCAGCAGCAGCAGCAGCAGCA
GCAGCAGGGCCTAGCGCCAATTCTGTGGCTGCTGCTCCCACAGCTTCTCC
GTGCTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10665:2163..2519+

>mRNA_E-fasciculatus_F_contig10665.528.1 ID=mRNA_E-fasciculatus_F_contig10665.528.1|Name=mRNA_E-fasciculatus_F_contig10665.528.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10665:2163..2519+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTACGTTTCTGTTGCTCTACAGCGGCGACTTCCCATGCGCAGACCT
GAGCGGCAGCAACGGGACGGAGATACAACAGCACAAGCAGGAGCAGCAGC
CTCTCCCCTCTCCCCCCAAAACAAGCGGGCGGAAGCGGAGCTTGCCGCAG
ACGTGCAGCTGGGACAACCTCGGCCCGAAGGCCCTCTCGGAGATCAGCGC
CAGCCTGCTCGCCGGCGGCTGGGATGGCAGCGGTAACAGCAGCATGAGCA
TCAGCAGCCCGCAATTCCTGCCCCCCCCCCCAGCAGCAGCAGCAGCAGCA
GCAGCAGGGCCTAGCGCCAATTCTGTGGCTGCTGCTCCCACAGCTTCTCC
GTGCTCCATGCGTACGTTTCTGTTGCTCTACAGCGGCGACTTCCCATGCG
CAGACCTGAGCGGCAGCAACGGGACGGAGATACAACAGCACAAGCAGGAG
CAGCAGCCTCTCCCCTCTCCCCCCAAAACAAGCGGGCGGAAGCGGAGCTT
GCCGCAGACGTGCAGCTGGGACAACCTCGGCCCGAAGGCCCTCTCGGAGA
TCAGCGCCAGCCTGCTCGCCGGCGGCTGGGATGGCAGCGGTAACAGCAGC
ATGAGCATCAGCAGCCCGCAATTCCTGCCCCCCCCCCCAGCAGCAGCAGC
AGCAGCAGCAGCAGGGCCTAGCGCCAATTCTGTGGCTGCTGCTCCCACAG
CTTCTCCGTGCTCC
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