mRNA_E-fasciculatus_F_contig1066.525.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI) HSP 1 Score: 212 bits (539), Expect = 1.040e-59 Identity = 113/205 (55.12%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 253 ILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVAIMVVVFVAIKITDVINNAMLKRSPSSRGFYVKAKKNLWRQALALCILGWAVIVVVAVRHLTQVGRGTPIIAWTAQVLCGVMSTILFTAFTDFNGPPPASPSARSSPNQISPIKPSSMPLAPQHSR 867
+LFGVAMMAEFWLES+P QLV P SF LT SRK++ ++VG++NAGIISTLG+ TLF FWP LL DLAV G+ + +V++FVA++IT IN AM + + SS FY++AKKNLW+QALALC +G AV V +AVRHLTQ GR TPII WTAQ LCG + ++FT+ T F P S ++ + P+ I+ + SS A + SR
Sbjct: 1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTQFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPSLIATMTSSSEYSATKISR 205
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.890e-43 Identity = 96/225 (42.67%), Postives = 139/225 (61.78%), Query Frame = 1
Query: 112 RVLLSTSVFAVGNVFIGSILAVRAGREGYSFQDNGFAQALYIVMLPSILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVAIMVVVFVAIKITDVINNAMLKR-----SPSSRGFYVKAKKNLWRQALALCILGWAVIVVVAVRHLTQVGRGTPIIAWTAQVLCGVMSTILFTAFTDFN 771
R +++ ++A G ++ L +RAG GY D+G + YI++ P +F VAM+AE+W+ES+P Q++ PDSF +L AS V++GV N G++S LG++T F WP+ ADL + G A +VV FVA +IT VIN A SPSSR FY KAK+N+W QA ALC +G ++V+A++ LT GR TPII T Q+L G I+F++ T F+
Sbjct: 2 RSMVTGCLYAFGFGWMAIGLVIRAGDIGY--HDDGPLRVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATSTAMGRPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSFD 224
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.170e-33 Identity = 80/184 (43.48%), Postives = 106/184 (57.61%), Query Frame = 1
Query: 169 LAVRAGREGYSFQDNGFAQALYIVMLPSILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVAIMVVVFVAIKITDVINNAMLKRSPSSRGFYVKAKKNLWRQALALCILGWAVIVVVAVRHLTQVGRGTPIIAWTAQV 720
LAVRAG GY D+G Q YI++ P +F VAM+AE+W+ES+P Q++ PDSF +L AS V++GV N G++S LG++T F WP+ AD+ V G A SPSSR FY KAK+NLW QA AL +G ++V+A++ LT GR TPII T QV
Sbjct: 5 LAVRAGDIGY--HDDGPLQVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGGILTA---------------------GSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.220e-11 Identity = 35/108 (32.41%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 175 VRAGREGYSFQDNGFAQALYIVMLPSILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVAIM 498
+R G+ G D G Q Y V+ P F + +A FW+ +P QL+P +S+ ARL AS + + ++++G +NA +S GILT+ + ++ AD + LG+ ++
Sbjct: 1 MREGKTG--LYDEGLMQVEYAVLFPCNTFAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALGSITVVV 106
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: D8LSN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 6.570e-10 Identity = 52/182 (28.57%), Postives = 86/182 (47.25%), Query Frame = 1
Query: 178 RAGREGYSFQDNGFAQALYIVMLPSILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVAIMVVVFVAIKITDVINNAMLKRSP-SSRGFYVKAKKNLWRQALALCILGWAVIVVVAVRHLTQVGRGTPIIAWTAQV 720
R+ E Y Q N Y V LP ++FG+ ++ +FW++S+P+ L+P SF A+ + K++ + + IS +G + A WP D + LGA + + +A +I I++A K S S++ FY K K + +Q +L A T GR T II ++ V
Sbjct: 15 RSLPELYVLQTN------YAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATAIIPFSIYV 190
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Match: A0A6H5JMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.020e-9 Identity = 73/295 (24.75%), Postives = 118/295 (40.00%), Query Frame = 1
Query: 4 VSVVSMVAVVMLLWQVNAYRHLSAAARHSHKTVVRTRVLL--------STSV---------------------FAVGNVFIGSILAVRAGR----EGYSFQDNGFAQALYIVMLPSILFGVAMMAEFWLESIPVQLVPPDSFTARLTAASRKYHFLVIVGVVNAGIISTLGILTLFTAFWPRLLADLAVGLGATVA----------------------IMVVVFVAIKITDVINNAMLKRSP-SSRGFYVKAKKNLWRQALALCILGWAVIVVVAVRHLTQVGRGTPIIAWTAQV 720
++V S++ + LLW + +R LS + + ++R RVLL STS+ FA G S+ G E Y Q N Y V LP ++FG+ ++ +FW++S+P+ L+P SF A+ + ++ + + IS +G + A WP D + LGA + + VA +I I++A K S S++ FY K K + +Q +L A T GR TPII ++ V
Sbjct: 58 IAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTN------YAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSTYV 346 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1066.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1066.525.1 >prot_E-fasciculatus_F_contig1066.525.1 ID=prot_E-fasciculatus_F_contig1066.525.1|Name=mRNA_E-fasciculatus_F_contig1066.525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=422bp MVAVVMLLWQVNAYRHLSAAARHSHKTVVRTRVLLSTSVFAVGNVFIGSIback to top mRNA from alignment at E-fasciculatus_F_contig1066:6852..12501+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1066.525.1 ID=mRNA_E-fasciculatus_F_contig1066.525.1|Name=mRNA_E-fasciculatus_F_contig1066.525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1066:6852..12501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1066:6852..12501+ >mRNA_E-fasciculatus_F_contig1066.525.1 ID=mRNA_E-fasciculatus_F_contig1066.525.1|Name=mRNA_E-fasciculatus_F_contig1066.525.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2532bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1066:6852..12501+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |