mRNA_E-fasciculatus_F_contig10659.523.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.690e-52 Identity = 106/146 (72.60%), Postives = 109/146 (74.66%), Query Frame = 3
Query: 273 VPEKKVPALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPPGGSISLNGDGXXXXXXXXXXXXXXXXXXXXXXXXGSVRPRLDSDGSVVSLSAHPASSXXXXXXXXXXSGDRFNSNEAFSASAFFP 710
VPEKKVPALAHADLFWRAAVVALVLAATNP SVG ELWETSPTMRCLMQMLVCTDFRFPPPGGS SLNGDG GSVRPRLDSDGSVV+LSAHPASS SGDRFN++EAFSASAFFP
Sbjct: 1165 VPEKKVPALAHADLFWRAAVVALVLAATNPASVGHELWETSPTMRCLMQMLVCTDFRFPPPGGSFSLNGDGGNSGTTATGTAATKGTECGGGG--GSVRPRLDSDGSVVALSAHPASSSQGGG-----SGDRFNNSEAFSASAFFP 1303
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.890e-16 Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 3
Query: 420 MLVCTDFRFPPPGGSISLNGDGXXXXXXXXXXXXXXXXXXXXXXXXGSVRPRLDSDGSVVSLSAHPASSXXXXXXXXXXSGDRFNSNEAFSA 695
MLVCTDFRFPPPGGS SLNGDGXXXXXXXXXXXXXXXXXXXXXXX SVRPRLDSDGSVVSLSAHPASS SGDRFN++EAFSA
Sbjct: 1 MLVCTDFRFPPPGGSFSLNGDGXXXXXXXXXXXXXXXXXXXXXXX--SVRPRLDSDGSVVSLSAHPASSSRGGG-----SGDRFNNSEAFSA 85
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A835Z0U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U3_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.990e-15 Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 3
Query: 297 LAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPPGGSISLNGD 482
LA+ADLFWRA + +LVLAATNP +VGR W+ PT+RCLMQM+VC+ + FPPPG ++ D
Sbjct: 898 LAYADLFWRACLCSLVLAATNPSTVGRWAWDHVPTLRCLMQMVVCSQYEFPPPGAMAAVADD 959
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A4D9DCY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCY3_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.530e-14 Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 3
Query: 282 KKVPALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPPGGSISLNG 479
++VP LAH+++FWR A++ L+++ +NP SVG+ LW PT RCLMQM+VC + FPPPG ++ G
Sbjct: 579 EQVPPLAHSEIFWRVALLLLLVSGSNPSSVGQWLWRHCPTTRCLMQMVVCNQYHFPPPGAVLTAEG 644
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A2G8JWK2_STIJA (Integrator complex subunit 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JWK2_STIJA) HSP 1 Score: 64.7 bits (156), Expect = 2.540e-8 Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 3
Query: 285 KVPALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPP 452
K P+LA +L+W++ V+ L+LAA NP ++G+ WE PT+RC+M+M++ +F+FPP
Sbjct: 421 KPPSLAILNLYWKSWVILLILAAFNPDNIGKTGWEHYPTLRCMMEMVMTNNFKFPP 476
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A2G8LBF1_STIJA (Integrator complex subunit 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LBF1_STIJA) HSP 1 Score: 64.7 bits (156), Expect = 2.580e-8 Identity = 26/56 (46.43%), Postives = 43/56 (76.79%), Query Frame = 3
Query: 285 KVPALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPP 452
K P+LA +L+W++ V+ L+LAA NP ++G+ WE PT+RC+M+M++ +F+FPP
Sbjct: 710 KPPSLAILNLYWKSWVILLILAAFNPDNIGKTGWEHYPTLRCMMEMVMTNNFKFPP 765
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: UPI00201EB845 (integrator complex subunit 1-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EB845) HSP 1 Score: 62.0 bits (149), Expect = 2.100e-7 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 291 PALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPP 455
P LA + L+W+A + V++A NPG+ G WE PT++CLM+M + +F+FPPP
Sbjct: 728 PTLAISALYWKAWTMLAVISAFNPGTFGLSAWENYPTLKCLMEMAMTNNFKFPPP 782
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A210PWK7_MIZYE (Integrator complex subunit 1 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210PWK7_MIZYE) HSP 1 Score: 61.6 bits (148), Expect = 2.820e-7 Identity = 23/55 (41.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query: 291 PALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPP 455
P LA ++L+W++ ++ L+L+A NP + G WE PT++CLM+M++ +++FPPP
Sbjct: 715 PTLAISNLYWKSWIILLILSAFNPQTFGITAWENYPTLKCLMEMVMTRNYKFPPP 769
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: A0A8B7DM20_HYDVU (integrator complex subunit 1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DM20_HYDVU) HSP 1 Score: 60.5 bits (145), Expect = 6.770e-7 Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 3
Query: 291 PALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPP 452
P LA ++L+W+A V LVL ATNP ++G ++W+ PT RC+M+M++ + FPP
Sbjct: 349 PNLAISNLYWKAWWVLLVLVATNPSTIGVQVWQDYPTARCMMEMIITGAYSFPP 402
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Match: UPI001EE5C721 (LOW QUALITY PROTEIN: integrator complex subunit 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C721) HSP 1 Score: 60.5 bits (145), Expect = 6.770e-7 Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 291 PALAHADLFWRAAVVALVLAATNPGSVGRELWETSPTMRCLMQMLVCTDFRFPPP 455
P LA + L+W+A + +V++A NP + G WE PT++CLM+M + +F+FPPP
Sbjct: 728 PTLAISALYWKAWTMLVVISAFNPSTFGLSAWENYPTLKCLMEMAMTNNFKFPPP 782 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10659.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10659.523.1 >prot_E-fasciculatus_F_contig10659.523.1 ID=prot_E-fasciculatus_F_contig10659.523.1|Name=mRNA_E-fasciculatus_F_contig10659.523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp MAHRARKSGGGGGGGSKSGGSFGEGGGSSPRGDGGSGGGGASPPRDDDGGback to top mRNA from alignment at E-fasciculatus_F_contig10659:1087..2363- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10659.523.1 ID=mRNA_E-fasciculatus_F_contig10659.523.1|Name=mRNA_E-fasciculatus_F_contig10659.523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1277bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10659:1087..2363- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10659:1087..2363- >mRNA_E-fasciculatus_F_contig10659.523.1 ID=mRNA_E-fasciculatus_F_contig10659.523.1|Name=mRNA_E-fasciculatus_F_contig10659.523.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10659:1087..2363- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |