mRNA_E-fasciculatus_F_contig10657.522.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10657.522.1
Unique NamemRNA_E-fasciculatus_F_contig10657.522.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10657.522.1 vs. uniprot
Match: D7FMF6_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF6_ECTSI)

HSP 1 Score: 907 bits (2343), Expect = 0.000e+0
Identity = 480/550 (87.27%), Postives = 502/550 (91.27%), Query Frame = 1
Query:    1 SVSRFGKRGTVVGGMSDQPFSTSSSTEGQLQQPGRRKRHHASWLLSVRLVTAHSPSDGLQTSSEDPPGVSGVGGNDDEGQRFLNLPLTEAGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGEGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWPRGQGG---HGGRSSSPSNSNVPKKVVEVHDLGGGSGNQGELSYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPSDGDSTASRKPLFLFLEGLDANDPEGG-HGAAIPGGGSRRNASSDPWSRARRRSRDGGGRSSSRVVANSTLHGRQRQRSDAAAGPAAAFPTPMAHSPRSTGHPMAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPRQVAVAELMRPTRAGSTDSDGGSXXXXXXXXRGREGG---VSTTNEHVPGISLQSVPCRNMSNQILYLSVEAASVRVRN 1629
            SVSRFGKRGTVVGGMSDQPFSTSS+TEGQ QQPGRR R HASWLLSVRLVTA SPSD  QT ++DPPGVSGVGG+DDEGQRFLNLPLTEAGRSFLQC+LVMEGVPGR+AAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRG+GDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWPR QGG    G RSSSPSN+++PKKVVEVH L G SG+QGE SYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSP+DGD+TA RKPLFLFLEGLDANDPEGG HGAAIPGGGSRR ASSDPWS+ RR SRDGGGRS+SRVVAN+TLHGRQRQR DA+      FPT +  SPRS G+PMAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWL PGDGVHVLEANAMAMAPSLSFKVAGFDWTPP QVAVAELMRPTRAGSTDSDG  XXXXXXXX         V TT+EHVPGISLQSVPCRNMSNQILYLSVEAASVR+ +
Sbjct:  103 SVSRFGKRGTVVGGMSDQPFSTSSTTEGQSQQPGRRNRRHASWLLSVRLVTAQSPSDVQQTGADDPPGVSGVGGDDDEGQRFLNLPLTEAGRSFLQCLLVMEGVPGREAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWPRSQGGGFGDGRRSSSPSNNSMPKKVVEVHHLAGESGDQGERSYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPADGDTTACRKPLFLFLEGLDANDPEGGGHGAAIPGGGSRRKASSDPWSKTRRTSRDGGGRSNSRVVANATLHGRQRQRPDAS------FPTRVVDSPRSAGNPMAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLTPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPHQVAVAELMRPTRAGSTDSDGXXXXXXXXXXXXXXXXXXXVPTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNS 646          
BLAST of mRNA_E-fasciculatus_F_contig10657.522.1 vs. uniprot
Match: A0A6H5L5D8_9PHAE (PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D8_9PHAE)

HSP 1 Score: 865 bits (2235), Expect = 3.960e-310
Identity = 463/536 (86.38%), Postives = 481/536 (89.74%), Query Frame = 1
Query:   43 MSDQPFSTSSSTEGQLQQPGRRKRHHASWLLSVRLVTAHSPSDGLQTSSEDPPGVSGVGGNDDEGQRFLNLPLTEAGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGEGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWPRGQGGHGG---RSSSPSNSNVPKKVVEVHDLGGGSGNQGELSYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPSDGDSTASRKPLFLFLEGLDANDPEGG-HGAAIPGGGSRRNASSDPWSRARRRSRDGGGRSSSRVVANSTLHGRQRQRSDAAAGPAAAFPTPMAHSPRSTGHPMAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANAMAMAPSLSFKVAGFDWTPPRQVAVAELMRPTRAGSTDSDGGSXXXXXXXXRGRE---GGVSTTNEHVPGISLQSVPCRNMSNQILYLSVEAASVRVRN 1629
            MSDQPFSTSSS EGQLQQPGRR R HASWLLSVRLVTA SPSDG Q  +EDPP VSGVGG+DDEGQRFLNLPLTE GRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRG+GD AKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPW            RSSSPSN+++PKKVV++HDL  GSG+QGE SYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPS NSP+DGD+ ASRKPLFLFLEGLDANDP+GG HGAAIPGGGSR+NASS+PWSR RRRSRDGGGRSS RVVANSTLHGRQRQR DAA      FPT +  SPRS G  MAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEAN MAMAPSLS KVAGFDWT P QVAVAELMRPTR GST SDG  XXXXXXXXRGRE   GGVSTT+EHVPGISLQSVPCRNMSNQILYLSVEAASVR+ +
Sbjct:    1 MSDQPFSTSSSAEGQLQQPGRRNRRHASWLLSVRLVTAQSPSDGPQAGAEDPPEVSGVGGDDDEGQRFLNLPLTEVGRSFLQCMLVMEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEVRCSTDSFAAGRGDGDNAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRPWXXXXXXXXXXXXRSSSPSNTSMPKKVVQIHDLAEGSGDQGERSYEYSDCSVLVPAARAGEGELGATTAVIPWVACNPSQPSANSPADGDTNASRKPLFLFLEGLDANDPDGGRHGAAIPGGGSRQNASSNPWSRTRRRSRDGGGRSSGRVVANSTLHGRQRQRPDAA------FPTRVVDSPRSAGISMAALSLRPLEVVVYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANTMAMAPSLSLKVAGFDWTSPHQVAVAELMRPTREGSTGSDG-XXXXXXXXXRGRELPGGGVSTTSEHVPGISLQSVPCRNMSNQILYLSVEAASVRMNS 529          
BLAST of mRNA_E-fasciculatus_F_contig10657.522.1 vs. uniprot
Match: A0A836C849_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C849_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-9
Identity = 57/163 (34.97%), Postives = 71/163 (43.56%), Query Frame = 1
Query:  232 EGQRFLNLPLTEAGRSFLQCMLVMEGVPG--------------RKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKCGSWLEV---RCSTDSFAAGR--------------------GEGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIRLRP 609
            + Q  LNLPL  AG   L+C L++ G  G                  G   QSP +   C+ IWEV LE+GR  +TLRSA+E+ N     LEV    CS    AA                      G+        V  +APG R  LPLRWS A D+R+RP
Sbjct: 3843 DAQPLLNLPLIRAGTLRLECSLLL-GDDGDGEXXXXXXXXXXXXXXXGGALQSPPQS--CEVIWEVRLESGRRVLTLRSAVELANLTSLPLEVSAQHCSAPGAAADAXXXXXXXXXXXXXXXXXXXXGDAVPPAPPYVAHIAPGERHALPLRWSAANDVRVRP 4002          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10657.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMF6_ECTSI0.000e+087.27SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L5D8_9PHAE3.960e-31086.38PHS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836C849_9STRA1.400e-934.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10657contigE-fasciculatus_F_contig10657:623..4768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuolar protein sorting-associated protein 13
Ec32 orthologEc-05_000910.1
Exons6
Model size1629
Cds size1629
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10657.522.1prot_E-fasciculatus_F_contig10657.522.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10657 623..4768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.7379417-CDS-E-fasciculatus_F_contig10657:622..8771622927563.7379417-CDS-E-fasciculatus_F_contig10657:622..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 623..877 -
1695995597.9515493-CDS-E-fasciculatus_F_contig10657:622..8771695995597.9515493-CDS-E-fasciculatus_F_contig10657:622..877Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 623..877 -
1622927563.7766051-CDS-E-fasciculatus_F_contig10657:1373..19741622927563.7766051-CDS-E-fasciculatus_F_contig10657:1373..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 1374..1974 -
1695995597.9595342-CDS-E-fasciculatus_F_contig10657:1373..19741695995597.9595342-CDS-E-fasciculatus_F_contig10657:1373..1974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 1374..1974 -
1622927563.787266-CDS-E-fasciculatus_F_contig10657:2218..24511622927563.787266-CDS-E-fasciculatus_F_contig10657:2218..2451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 2219..2451 -
1695995597.9676564-CDS-E-fasciculatus_F_contig10657:2218..24511695995597.9676564-CDS-E-fasciculatus_F_contig10657:2218..2451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 2219..2451 -
1622927563.799727-CDS-E-fasciculatus_F_contig10657:2659..28341622927563.799727-CDS-E-fasciculatus_F_contig10657:2659..2834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 2660..2834 -
1695995597.9754252-CDS-E-fasciculatus_F_contig10657:2659..28341695995597.9754252-CDS-E-fasciculatus_F_contig10657:2659..2834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 2660..2834 -
1622927563.8115368-CDS-E-fasciculatus_F_contig10657:3403..35661622927563.8115368-CDS-E-fasciculatus_F_contig10657:3403..3566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 3404..3566 -
1695995597.9840298-CDS-E-fasciculatus_F_contig10657:3403..35661695995597.9840298-CDS-E-fasciculatus_F_contig10657:3403..3566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 3404..3566 -
1622927563.823095-CDS-E-fasciculatus_F_contig10657:4566..47681622927563.823095-CDS-E-fasciculatus_F_contig10657:4566..4768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 4567..4768 -
1695995597.9939482-CDS-E-fasciculatus_F_contig10657:4566..47681695995597.9939482-CDS-E-fasciculatus_F_contig10657:4566..4768Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10657 4567..4768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10657.522.1

>prot_E-fasciculatus_F_contig10657.522.1 ID=prot_E-fasciculatus_F_contig10657.522.1|Name=mRNA_E-fasciculatus_F_contig10657.522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=543bp
SVSRFGKRGTVVGGMSDQPFSTSSSTEGQLQQPGRRKRHHASWLLSVRLV
TAHSPSDGLQTSSEDPPGVSGVGGNDDEGQRFLNLPLTEAGRSFLQCMLV
MEGVPGRKAAGDRGQSPRRLSRCDAIWEVCLENGRHTVTLRSALEVVNKC
GSWLEVRCSTDSFAAGRGEGDKAKEEVVGAVAPGGRLPLPLRWSRAEDIR
LRPWPRGQGGHGGRSSSPSNSNVPKKVVEVHDLGGGSGNQGELSYEYSDC
SVLVPAARAGEGELGATTAVIPWVACNPSQPSTNSPSDGDSTASRKPLFL
FLEGLDANDPEGGHGAAIPGGGSRRNASSDPWSRARRRSRDGGGRSSSRV
VANSTLHGRQRQRSDAAAGPAAAFPTPMAHSPRSTGHPMAALSLRPLEVV
VYASLSFRNLLPVGVGWRVAGARGDAGARLAEGWLAPGDGVHVLEANAMA
MAPSLSFKVAGFDWTPPRQVAVAELMRPTRAGSTDSDGGSGGGSSSSSRG
REGGVSTTNEHVPGISLQSVPCRNMSNQILYLSVEAASVRVRN
back to top

mRNA from alignment at E-fasciculatus_F_contig10657:623..4768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10657.522.1 ID=mRNA_E-fasciculatus_F_contig10657.522.1|Name=mRNA_E-fasciculatus_F_contig10657.522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4146bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10657:623..4768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGTGTCTCGATTCGGAAAACGGGGCACCGTGGTGGGGGGCATGTCAGA CCAGCCCTTCAGCACCTCCAGCTCGACGGAGGGGCAGTTACAGCAGCCTG GAAGAAGGAAGAGGCACCATGCGTCGTGGTTGTTGTCTGTCCGCTTGGTC ACCGCCCACAGCCCGTCTGATGGGCTGCAGACGAGTTCCGAGGACCCACC AGGTATTATCAACGGAAATTAGATTTGCACGATTGTTTCGTTGAGGTTCG CTGGGCTGCTGTAGGAGTCAAACACAAATGTCAGGTGCTGTGTAGGCTAT TGAGCTTGAGAAACGTCGCAACTGGCAGCTGCTGGCTGGTTCTGTTACTG CTTTTGTTTTTCATCTTGCAGCACCCCCTTGATGACACGGTGCTCGAATG AGCCCACCCCTAAGGTATCACCTGTGTATGATATGCATATATATTTGCAG CAGCAGCAGCAGCAGCAGCAGACCCGAAATCATGATAGATTTTACCCGCA CGTTACAGTACGCGGTGTCACGGAACGTGTTGCTGTTCCTGGGAATATGC AGTGATGAACCGGTTGGTACCGTGATGCAAGAGTTGGGTGCGGAGACGTC GAATTAGTGGGGGGTCGCTTCTACGGTGGCAGATAGGTCGTCATGGCTGG CGTCTCAAGGACTGAAGTCGCATCATTTTCTCAGAGCGTGAGGGTGTCCT CGCACGCGCAGCCTTCCGGGTGCTGCCTCTCGCCAATGTCCGGCGAAGGA GGGGTCGGGGGATGGGGGAGAACTACCATTACTTTGCCCCTTTCTAAAAA ACAAACTGCTCATTTCTTTCAGCTAATCAGCTGCCCGGGTTTTGTTTTCT TTCAACTCCGAGCAAGGGGAACAAAGTTCTGGTTTTGTAAGTCCCGAAAA AGGATCTCCCTCCGGCCAGAGTTTTTTTTTATGTGGGGGGGGGGCTACTG CGAGTGGTCTATTGCAAGCGATTTACTCCTTAGGTGCCACGCAATAGAGA CCGGCCGACGGTTGCGTAAGACAGGAATCCGAACTAGGTCTTGAGGTTCA CACATTGTTTTGTTTTATTGTGCGAAGGTGGCCTCAATGGAACAAACGTC ATGCGATAATACAGGCCGGACATCCCTCCGTAAAACCTCAGAATCTCTTG AAGTATCGCGTGGCATACAACCTTAACACCCGCCCATGTTTTTTTGTTCC AGGGGTTTCCGGCGTTGGAGGCAACGACGATGAGGGGCAGCGGTTCTTGA ACCTCCCCCTCACCGAGGCGGGGCGTAGCTTCTTGCAGTGCATGCTTGTC ATGGAAGGCGTGCCCGGACGAAAAGCGGCCGGGGACAGGGGACAGTCGCC GAGACGGCTGAGCAGGTACGGACGCATTGGCGGCGTTACGACGCGCCTCT TGATGGCGAAATCAAGCGTCCACAGCACTCGCCGACATCGGGGGATATCA ATGTTCTCAACCCGATGTTAATCTACGTAACGAGCCTTGCGGTGATCGAT GGTTGGAAAGGGGTCGGAGGATAAATAATATATTGTCATTCTCAGCGTTG ATGGTTGAATGAAAGTATGATATTTGGCGAGGCGTCCTTCGGCGGCAGGA GGGTCTCCACTAAGATTCTCCTCTTTCGGCGCTGAGCGCGCTCCCAGCGC ACCGATGGTCGGAAGTGGGTGTATCGGAGACTCCCACGGTGCAAGGTCGG AGGGGTAAAGGGGGCAGCAGGACATGCGGTTGAGCAGGCATGCCAGGCAT ACACACGTCACGCCCTATAGCAGCAGCCGAAAAATTGAATCGTTAGGCCG GTCAGCGCGCTGGCTAAATAGCTGAAATTCTACCCAGCAGGAGCTGCCTG CTCTACAATGGTATTTTTCATTTTTTGCGCAATCCGGGCTGCGTACTTGC TGAACTCTGTCCCACTATATACATGGTACTCCAGGTGTGACGCGATCTGG GAGGTGTGCCTGGAGAACGGTCGCCACACGGTAACCCTGCGGTCGGCGCT CGAAGTCGTGAACAAGTGCGGGTCCTGGCTGGAAGTTCGGTGCTCCACGG ACTCGTTTGCCGCCGGCAGGGGGGAGGGGGACAAGGCGAAGGAGGAGGTC GTGGGAGCGGTGCGTGTTGTTGTTGTTGTCGGCCTGAAAATTATAGCTTC GACGATGAACGCATGCCATTTTCATGGATTATTAACATATGGAAATTTCT CTAAAATAATCATTAATCCTGCGTCAAAGCGACTTGTCCCGCAGTTTCTT TTTCCCCGGTGGCAGCCTCGCGTTACACCATTGTACGCTGTTACCTGGCG ACGTTTGTATGCCGCAGGTTGCGCCCGGTGGCCGTCTGCCCTTACCGCTG AGGTGGAGCCGTGCGGAAGACATCAGGCTACGCCCGTGGCCGCGGGGCCA GGGCGGGCACGGCGGCCGTTCTTCTTCACCCTCCAACAGCAACGTGCCCA AGAAAGTCGTGGAAGTTCACGATCTAGGGGGGGGGTCGGGGAATCAGGGA GAGCTATCGTACGAGTACAGCGACTGCTCCGTCCTGGTGCCGGCGGCAAG GTTAGCAGTTTACCGCCGCGGTTGTGATGAAGGTGTCAGAAGAGCGCGTT TTGTCTCTTCGGAAGAAGCCCGTTGTAGCTTGGTCGTGACCATTCAGGGT CAGCGGGCAATCCATCGGAGTCGTGTGGGTGTCTTTGTAGTCAACGGTAC CCCTCGTGTTATCCTGCTCCTCCATGGAATGACATGCTATTGTGATATTT GTTTAACCCTTTTTGGGCTGGTCGTGGCTGGTCGTTTGTCGCAGGGCTGG AGAAGGCGAGCTCGGGGCCACAACGGCGGTCATCCCCTGGGTGGCATGCA ATCCCTCCCAACCTTCCACCAACTCCCCCTCCGATGGCGACTCAACGGCA AGCCGCAAGCCCCTCTTCCTGTTCCTGGAGGGGCTCGACGCGAACGATCC GGAGGGAGGACACGGCGCCGCCATCCCCGGAGGAGGAAGCCGCCGCAATG CGTCGTCCGACCCCTGGTCGAGAGCCAGGCGCAGAAGTCGAGACGGTGGC GGTAGAAGCAGCAGCAGGGTGGTGGCAAACTCGACACTTCATGGCCGGCA GCGGCAGCGCTCCGACGCGGCCGCGGGCCCCGCGGCGGCGTTTCCTACCC CGATGGCCCACTCCCCCCGCTCGACCGGACACCCGATGGCGGCGTTGTCC TTGCGGCCCCTGGAGGTTGTCGTGTACGCCTCCCTCAGCTTTCGAAACCT CCTGCCCGTCGGTGTTGGGTGGAGGGTAGCCGGCGCGAGGGGTGACGCGG GTGCGAGGCTGGCGGAGGGGTGGTTGGCGCCCGGGGATGGGGTCCACGTG CTGGAGGCGAACGCGATGGCCATGGCACCTTCGCTGTCGTTCAAGGTGCG TCGAACGTTGTTTTTCTTGGGATTTGTTTTTTTTTGTATCACAAGTTCTG AACGGATTCCCCATCGTAGCTTTTGCGTCTTGGGAAGCTGGCATCGCGCT GAAAGGGGTGGGTCAACGATCAGCTCATTTTCAACGAGGCTGGAATATTC TCAACTACGCCGAGCTTTCCCTGTTCCACCTAAGGGTGTACAGCATTCGT GAGTCCGCTAGAGGGCGGGTGACAGATATAGGGGGCGTGACAACTCTTGG CACAGATCTGGTTCGCCGGGTTTTGCAATTAGCGCTCGCGTGTCGCCTGG AGTTGGTAAAAGACGTACAAAACGTGCAAGCATGACTTCTCGATCACCAA CCTCGGAATCCACTGAATGTACGAGGGACAAGAGCCTTGTTTGGGGGGGG GGGAGGCGTTGCTTTGGTGGTGTTTTCCCATATGGTATACCGCGAGACGA GACGTTCAAAGCTTGGTCGTGCTTCTTCCTTGCCTCCGCAGGTCGCCGGG TTCGACTGGACCCCCCCTCGCCAGGTGGCCGTCGCCGAGCTCATGCGGCC GACAAGGGCAGGTTCCACGGACTCCGACGGCGGCAGCGGCGGCGGCAGCA GCAGCAGCAGCCGGGGCAGGGAAGGCGGCGTTTCGACAACCAACGAACAC GTGCCGGGGATAAGCCTGCAGAGCGTCCCCTGCCGCAACATGAGCAACCA GATACTGTACCTCAGCGTCGAGGCGGCTTCTGTCCGGGTGAGGAAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10657:623..4768-

>mRNA_E-fasciculatus_F_contig10657.522.1 ID=mRNA_E-fasciculatus_F_contig10657.522.1|Name=mRNA_E-fasciculatus_F_contig10657.522.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3258bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10657:623..4768- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGTGTCTCGATTCGGAAAACGGGGCACCGTGGTGGGGGGCATGTCAGA
CCAGCCCTTCAGCACCTCCAGCTCGACGGAGGGGCAGTTACAGCAGCCTG
GAAGAAGGAAGAGGCACCATGCGTCGTGGTTGTTGTCTGTCCGCTTGGTC
ACCGCCCACAGCCCGTCTGATGGGCTGCAGACGAGTTCCGAGGACCCACC
AGAGCGTGTCTCGATTCGGAAAACGGGGCACCGTGGTGGGGGGCATGTCA
GACCAGCCCTTCAGCACCTCCAGCTCGACGGAGGGGCAGTTACAGCAGCC
TGGAAGAAGGAAGAGGCACCATGCGTCGTGGTTGTTGTCTGTCCGCTTGG
TCACCGCCCACAGCCCGTCTGATGGGCTGCAGACGAGTTCCGAGGACCCA
CCAGGGGTTTCCGGCGTTGGAGGCAACGACGATGAGGGGCAGCGGTTCTT
GAACCTCCCCCTCACCGAGGCGGGGCGTAGCTTCTTGCAGTGCATGCTTG
TCATGGAAGGCGTGCCCGGACGAAAAGCGGCCGGGGACAGGGGACAGTCG
CCGAGACGGCTGAGCAGGGGTTTCCGGCGTTGGAGGCAACGACGATGAGG
GGCAGCGGTTCTTGAACCTCCCCCTCACCGAGGCGGGGCGTAGCTTCTTG
CAGTGCATGCTTGTCATGGAAGGCGTGCCCGGACGAAAAGCGGCCGGGGA
CAGGGGACAGTCGCCGAGACGGCTGAGCAGGTGTGACGCGATCTGGGAGG
TGTGCCTGGAGAACGGTCGCCACACGGTAACCCTGCGGTCGGCGCTCGAA
GTCGTGAACAAGTGCGGGTCCTGGCTGGAAGTTCGGTGCTCCACGGACTC
GTTTGCCGCCGGCAGGGGGGAGGGGGACAAGGCGAAGGAGGAGGTCGTGG
GAGCGGTGTGACGCGATCTGGGAGGTGTGCCTGGAGAACGGTCGCCACAC
GGTAACCCTGCGGTCGGCGCTCGAAGTCGTGAACAAGTGCGGGTCCTGGC
TGGAAGTTCGGTGCTCCACGGACTCGTTTGCCGCCGGCAGGGGGGAGGGG
GACAAGGCGAAGGAGGAGGTCGTGGGAGCGGTTGCGCCCGGTGGCCGTCT
GCCCTTACCGCTGAGGTGGAGCCGTGCGGAAGACATCAGGCTACGCCCGT
GGCCGCGGGGCCAGGGCGGGCACGGCGGCCGTTCTTCTTCACCCTCCAAC
AGCAACGTGCCCAAGAAAGTCGTGGAAGTTCACGATCTAGGGGGGGGGTC
GGGGAATCAGGGAGAGCTATCGTACGAGTACAGCGACTGCTCCGTCCTGG
TGCCGGCGGCAAGGTTGCGCCCGGTGGCCGTCTGCCCTTACCGCTGAGGT
GGAGCCGTGCGGAAGACATCAGGCTACGCCCGTGGCCGCGGGGCCAGGGC
GGGCACGGCGGCCGTTCTTCTTCACCCTCCAACAGCAACGTGCCCAAGAA
AGTCGTGGAAGTTCACGATCTAGGGGGGGGGTCGGGGAATCAGGGAGAGC
TATCGTACGAGTACAGCGACTGCTCCGTCCTGGTGCCGGCGGCAAGGGCT
GGAGAAGGCGAGCTCGGGGCCACAACGGCGGTCATCCCCTGGGTGGCATG
CAATCCCTCCCAACCTTCCACCAACTCCCCCTCCGATGGCGACTCAACGG
CAAGCCGCAAGCCCCTCTTCCTGTTCCTGGAGGGGCTCGACGCGAACGAT
CCGGAGGGAGGACACGGCGCCGCCATCCCCGGAGGAGGAAGCCGCCGCAA
TGCGTCGTCCGACCCCTGGTCGAGAGCCAGGCGCAGAAGTCGAGACGGTG
GCGGTAGAAGCAGCAGCAGGGTGGTGGCAAACTCGACACTTCATGGCCGG
CAGCGGCAGCGCTCCGACGCGGCCGCGGGCCCCGCGGCGGCGTTTCCTAC
CCCGATGGCCCACTCCCCCCGCTCGACCGGACACCCGATGGCGGCGTTGT
CCTTGCGGCCCCTGGAGGTTGTCGTGTACGCCTCCCTCAGCTTTCGAAAC
CTCCTGCCCGTCGGTGTTGGGTGGAGGGTAGCCGGCGCGAGGGGTGACGC
GGGTGCGAGGCTGGCGGAGGGGTGGTTGGCGCCCGGGGATGGGGTCCACG
TGCTGGAGGCGAACGCGATGGCCATGGCACCTTCGCTGTCGTTCAAGGGC
TGGAGAAGGCGAGCTCGGGGCCACAACGGCGGTCATCCCCTGGGTGGCAT
GCAATCCCTCCCAACCTTCCACCAACTCCCCCTCCGATGGCGACTCAACG
GCAAGCCGCAAGCCCCTCTTCCTGTTCCTGGAGGGGCTCGACGCGAACGA
TCCGGAGGGAGGACACGGCGCCGCCATCCCCGGAGGAGGAAGCCGCCGCA
ATGCGTCGTCCGACCCCTGGTCGAGAGCCAGGCGCAGAAGTCGAGACGGT
GGCGGTAGAAGCAGCAGCAGGGTGGTGGCAAACTCGACACTTCATGGCCG
GCAGCGGCAGCGCTCCGACGCGGCCGCGGGCCCCGCGGCGGCGTTTCCTA
CCCCGATGGCCCACTCCCCCCGCTCGACCGGACACCCGATGGCGGCGTTG
TCCTTGCGGCCCCTGGAGGTTGTCGTGTACGCCTCCCTCAGCTTTCGAAA
CCTCCTGCCCGTCGGTGTTGGGTGGAGGGTAGCCGGCGCGAGGGGTGACG
CGGGTGCGAGGCTGGCGGAGGGGTGGTTGGCGCCCGGGGATGGGGTCCAC
GTGCTGGAGGCGAACGCGATGGCCATGGCACCTTCGCTGTCGTTCAAGGT
CGCCGGGTTCGACTGGACCCCCCCTCGCCAGGTGGCCGTCGCCGAGCTCA
TGCGGCCGACAAGGGCAGGTTCCACGGACTCCGACGGCGGCAGCGGCGGC
GGCAGCAGCAGCAGCAGCCGGGGCAGGGAAGGCGGCGTTTCGACAACCAA
CGAACACGTGCCGGGGATAAGCCTGCAGAGCGTCCCCTGCCGCAACATGA
GCAACCAGATACTGTACCTCAGCGTCGAGGCGGCTTCTGTCCGGGTGAGG
AACGTCGCCGGGTTCGACTGGACCCCCCCTCGCCAGGTGGCCGTCGCCGA
GCTCATGCGGCCGACAAGGGCAGGTTCCACGGACTCCGACGGCGGCAGCG
GCGGCGGCAGCAGCAGCAGCAGCCGGGGCAGGGAAGGCGGCGTTTCGACA
ACCAACGAACACGTGCCGGGGATAAGCCTGCAGAGCGTCCCCTGCCGCAA
CATGAGCAACCAGATACTGTACCTCAGCGTCGAGGCGGCTTCTGTCCGGG
TGAGGAAC
back to top