mRNA_E-fasciculatus_F_contig10656.521.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10656.521.1
Unique NamemRNA_E-fasciculatus_F_contig10656.521.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.330e-40
Identity = 89/107 (83.18%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGEDDQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEESCGPCLERG 323
            TSQLTLLTLHFPQLRILWS +SEHA+ADMFK+LM+NNA VDVAKAQAAGG GEDDQG GDDASAKELLMR PGVN YN RNVLR VDTIAELSQLSEE   P L  G
Sbjct: 1100 TSQLTLLTLHFPQLRILWS-KSEHASADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVLRGVDTIAELSQLSEEQLRPLLGEG 1205
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 8.960e-17
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 3 
Query:   93 KQLMENNATVDVAKAQAAGGXGEDDQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEESCGPCL 314
            ++LM+NNA VDVAKAQAAGG GEDDQG GDDASAKELLMR PGV        LR+VDTIAELSQLSEE   P L
Sbjct: 1052 QELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV--------LREVDTIAELSQLSEEQLRPLL 1117
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A7S3L7V4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7V4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.830e-13
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 3 
Query:    6 SQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGX--------------GEDDQGKGDDA--SAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            S+L+LLT+HFP+LRILWS R  H T  +FK L  N+  VDV KA   G                GE+ + + D+   SA+E+L+R PGVN +  R ++ +VDT+AEL+ LS E
Sbjct:  110 SKLSLLTMHFPKLRILWS-RGPHETLKIFKDLKMNHEEVDVEKAMEIGRNESVEALLRADKSKGGEEGEEEEDEINESAREMLLRLPGVNVHAARRIMEEVDTLAELALLSRE 221
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A8C5PQD0_9ANUR (ERCC excision repair 4, endonuclease catalytic subunit n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PQD0_9ANUR)

HSP 1 Score: 84.0 bits (206), Expect = 3.520e-13
Identity = 51/146 (34.93%), Postives = 81/146 (55.48%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEESCGPCLERGTPPSSSSSSHSPPLCSVL*YILTQNIHSGQCLSTENPR 437
            TS++TLLTLHFP+LRILW   S HATA++F++L +N +  D A A A     E   + +  +   ++ L++ PG+NA NCR+++  V  IAEL+ LS+E     L         +S+++  L   +     + +  G+   TE  R
Sbjct:  767 TSKITLLTLHFPKLRILWC-ASPHATAELFEELKQNRSQPDAATAMAITADSETIPESEKYNPGPQDFLLKMPGINAKNCRSIMNHVKNIAELTTLSQEKLSEIL--------GNSNNAKQLYDFIHTSYAEAVSQGKAKRTEEER 903
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: K0T254_THAOC (ERCC4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T254_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 1.370e-12
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGX---------GED-----DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            TS+LTLL +HFP+LR+LWS RS H T  +FK+L  N+  V+V KA   G           GED     D  +G + +AK +L+R PGVN  N R ++ + D+IA L++L+ E
Sbjct:  734 TSKLTLLCMHFPKLRLLWS-RSPHETLKLFKKLKRNHEEVNVEKAIEVGSNDSLDELLRLGEDGAYNEDDAEGPNETAKRMLLRLPGVNVNNARKIMSECDSIAALAELTRE 844
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: G1T8H4_RABIT (ERCC excision repair 4, endonuclease catalytic subunit n=3 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1T8H4_RABIT)

HSP 1 Score: 82.0 bits (201), Expect = 1.410e-12
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            +S+LTLLTLHFP+LR+LW   S HATA++F++L  N    DVA A A     E   + +  +   ++ L++ PGVNA NCR+V+  V  IAEL+ LS++
Sbjct:  778 SSKLTLLTLHFPRLRLLWCP-SPHATAELFEELKRNKPQPDVATAMAVTADSESLPESEKYNPGPQDFLLKMPGVNAKNCRSVMNHVKNIAELATLSQD 875
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A0D9R727_CHLSB (ERCC excision repair 4, endonuclease catalytic subunit n=9 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0D9R727_CHLSB)

HSP 1 Score: 81.3 bits (199), Expect = 2.150e-12
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            +S+LTLLTLHFP+LRILW   S HATA++F++L +N    D A A A     E   + +  +A  ++ L++ PGVNA NCR+++  V  IAEL+ LS++
Sbjct:  604 SSKLTLLTLHFPRLRILWCP-SPHATAELFEELKQNKPQPDAATALAITADSETLPESEKYNAGPQDFLLKMPGVNAKNCRSLMHHVKNIAELATLSQD 701
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A3Q7MWY6_CALUR (DNA repair endonuclease XPF isoform X2 n=1 Tax=Callorhinus ursinus TaxID=34884 RepID=A0A3Q7MWY6_CALUR)

HSP 1 Score: 81.3 bits (199), Expect = 2.410e-12
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            +S+LTLLTLHFP+LRILW   S HATA++F++L +N    D A A A     E   + +  +   ++ L++ PGVNA NCR +++ V  IAEL+ LS++
Sbjct:  748 SSKLTLLTLHFPRLRILWCP-SPHATAELFEELKQNRPQPDAATAMAVTADSETLPESEKYNPGPQDFLLKMPGVNAKNCRTLMQHVQNIAELASLSQD 845
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: UPI0010162CF6 (DNA repair endonuclease XPF isoform X2 n=1 Tax=Eumetopias jubatus TaxID=34886 RepID=UPI0010162CF6)

HSP 1 Score: 81.3 bits (199), Expect = 2.410e-12
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            +S+LTLLTLHFP+LRILW   S HATA++F++L +N    D A A A     E   + +  +   ++ L++ PGVNA NCR +++ V  IAEL+ LS++
Sbjct:  748 SSKLTLLTLHFPRLRILWCP-SPHATAELFEELKQNRPQPDAATAMAVTADSETLPESEKYNPGPQDFLLKMPGVNAKNCRTLMQHVQNIAELASLSQD 845
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Match: A0A673VTU3_SURSU (ERCC excision repair 4, endonuclease catalytic subunit n=5 Tax=Suricata suricatta TaxID=37032 RepID=A0A673VTU3_SURSU)

HSP 1 Score: 81.3 bits (199), Expect = 2.470e-12
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3 
Query:    3 TSQLTLLTLHFPQLRILWSNRSEHATADMFKQLMENNATVDVAKAQAAGGXGED-DQGKGDDASAKELLMRPPGVNAYNCRNVLRKVDTIAELSQLSEE 296
            +S+LTLLTLHFP+LRILW   S HATA++F++L +N    D A A A     E   + +  +   ++ L++ PGVNA NCR ++  V  IAEL++LS++
Sbjct:  784 SSKLTLLTLHFPRLRILWCP-SPHATAELFEELKQNKPQPDAATAMAVSADSETLPESEKYNPGPQDFLLKMPGVNAKNCRALMHHVQNIAELARLSQD 881
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10656.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE3.330e-4083.18ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI8.960e-1772.97ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3L7V4_9STRA1.830e-1343.36Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8C5PQD0_9ANUR3.520e-1334.93ERCC excision repair 4, endonuclease catalytic sub... [more]
K0T254_THAOC1.370e-1242.86ERCC4 domain-containing protein n=1 Tax=Thalassios... [more]
G1T8H4_RABIT1.410e-1245.45ERCC excision repair 4, endonuclease catalytic sub... [more]
A0A0D9R727_CHLSB2.150e-1245.45ERCC excision repair 4, endonuclease catalytic sub... [more]
A0A3Q7MWY6_CALUR2.410e-1244.44DNA repair endonuclease XPF isoform X2 n=1 Tax=Cal... [more]
UPI0010162CF62.410e-1244.44DNA repair endonuclease XPF isoform X2 n=1 Tax=Eum... [more]
A0A673VTU3_SURSU2.470e-1244.44ERCC excision repair 4, endonuclease catalytic sub... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10656contigE-fasciculatus_F_contig10656:772..3404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.2e-17
Seed eggNOG ortholog2880.D7FH45
Preferred nameRAD1
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG0442@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size1696
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10656.521.1prot_E-fasciculatus_F_contig10656.521.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10656 1142..2088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.6614616-UTR-E-fasciculatus_F_contig10656:771..8321622927563.6614616-UTR-E-fasciculatus_F_contig10656:771..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 772..832 +
1695995597.8922381-UTR-E-fasciculatus_F_contig10656:771..8321695995597.8922381-UTR-E-fasciculatus_F_contig10656:771..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 772..832 +
1622927563.674341-UTR-E-fasciculatus_F_contig10656:1116..11411622927563.674341-UTR-E-fasciculatus_F_contig10656:1116..1141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 1117..1141 +
1695995597.905253-UTR-E-fasciculatus_F_contig10656:1116..11411695995597.905253-UTR-E-fasciculatus_F_contig10656:1116..1141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 1117..1141 +
1622927563.7053611-UTR-E-fasciculatus_F_contig10656:2088..34041622927563.7053611-UTR-E-fasciculatus_F_contig10656:2088..3404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 2089..3404 +
1695995597.9364862-UTR-E-fasciculatus_F_contig10656:2088..34041695995597.9364862-UTR-E-fasciculatus_F_contig10656:2088..3404Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10656 2089..3404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.683958-CDS-E-fasciculatus_F_contig10656:1141..13001622927563.683958-CDS-E-fasciculatus_F_contig10656:1141..1300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10656 1142..1300 +
1695995597.913198-CDS-E-fasciculatus_F_contig10656:1141..13001695995597.913198-CDS-E-fasciculatus_F_contig10656:1141..1300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10656 1142..1300 +
1622927563.6939101-CDS-E-fasciculatus_F_contig10656:1953..20881622927563.6939101-CDS-E-fasciculatus_F_contig10656:1953..2088Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10656 1954..2088 +
1695995597.924462-CDS-E-fasciculatus_F_contig10656:1953..20881695995597.924462-CDS-E-fasciculatus_F_contig10656:1953..2088Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10656 1954..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10656.521.1

>prot_E-fasciculatus_F_contig10656.521.1 ID=prot_E-fasciculatus_F_contig10656.521.1|Name=mRNA_E-fasciculatus_F_contig10656.521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
MFKQLMENNATVDVAKAQAAGGGGEDDQGKGDDASAKELLMRPPGVNAYN
CRNVLRKVDTIAELSQLSEESCGPCLERGTPPSSSSSSHSPPLCSVL*
back to top

mRNA from alignment at E-fasciculatus_F_contig10656:772..3404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10656.521.1 ID=mRNA_E-fasciculatus_F_contig10656.521.1|Name=mRNA_E-fasciculatus_F_contig10656.521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2633bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10656:772..3404+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCACCTCGCAGCTTACGCTCCTGACCCTCCACTTCCCTCAGCTCCGCATC
CTGTGGTCCAAGTGAGCTGCGTGGTTGTTGTTGTTGTTGTTGTTGATGAT
GATGATATTGTTGTCGAGACACACTATACCACCAATCTTGTCTCCGTTTT
CTGTTGCTGTTCTCTTGATTCGTGTCTCCTTTCCTTGTCTGTTGTTCTCG
CTCTTGTCGACTTTCCTTTTCTGTCAGTTCCCTTCATCATTTGTTGTTAT
TGTTCGCCGCCGGTCTCACTTTTTTTTTCTTTCCCCAGATCGGCATATAT
TTTTTCTTCTTTCATATTTGTTTGTTTTTGTTTGGTCCCTTTCGGCCGGT
CGGAACACGCGACCGCCGACATGTTCAAGCAGCTCATGGAGAACAACGCC
ACGGTAGACGTGGCGAAGGCTCAGGCGGCCGGGGGAGGCGGTGAGGATGA
CCAGGGGAAAGGGGACGACGCCTCCGCTAAGGAGCTGCTGATGCGGCCTC
CCGGCGTGAACGCGTACAACTGTCGAAACGTACGAGAGGGATCGACGGCT
TTAATTGTAGCAGTAGATGTTCCTCCTTTTCCCGATTGTTAGTAGGTGGG
GTTGGAAGTCGCTTGTCGTGGAGCCTTCGAAATGTTCGAGACTGATTAGT
CTACTGGCTACACGTACATTGGTGTGTCCCTATTTTTACTATGGATGGAG
CCTGACGCTTTTCCGCATACAACCAACGTAGCATACTAAGCTTGCAGTAG
TCGATGTTCGCTTGTGGGAGGTGGCAGGCGTGCATCGCACGAGGGAAATA
GGGGGGAGCAACTGTATGTCCTTTCTGTGGTCGGGGCTTTTGCAACCTCG
TGTGGCGTGAAGAATGGAAATACCGTACAGTGGGTCGCTTCCATCTTTGC
AGTCTGGATGGCACACCGCCCTCCCATCCCTGTCTGATGCCTGCCGTTGA
CTCTACTGACCCCCACCCGCCCATCTCCCTTATCAACCCCCAGTTTGTGT
CGTGTGCATGCTTGATGCCTCTTGACACTTGACTCCGAAAATGCCCCCGA
TAATGTCTGAAACCGCTCCACCATACGGATAGCTCTCTGCTTCCAAAGCG
GTCGATGGCCAATGGCAATGCAATAGCACGAAGAAACTCACGAGCGAACC
TCCCGATCTGCATTGTTTGTCCGTGATCACAGGTACTCCGAAAAGTGGAC
ACCATCGCCGAGCTCAGCCAGCTCTCCGAGGAGAGCTGCGGCCCTTGCTT
GGAGAGGGGAACGCCTCCAAGCTCCTCAAGCTCTTCACACAGCCCGCCCC
TGTGTAGTGTGTTGTGATATATTCTTACACAGAACATACACAGCGGTCAA
TGTCTTTCCACAGAAAATCCCCGAAAAGGATTTCAATGACGTTTGGGGCT
TCATTGTTTTGTTCTTCTGTGAATAGTTTTCGGTCGTCGGTACGCCCGCC
AGATGCAACGCCGACCTGTGGTGTGCAGGAGGCAGATGGGTGATGCAAGC
AGAAGGGTCGTTTATTTTCTCTCCACGAGGGCACGTCTCCCGAGCAGCCC
AAGCCTCGTCGTAACTTATTTGTTCATCTGGATTAACAATCTAATGTGCA
AGAACTGGTAGCAAAAGCTTTCACGGATGGTTGCCCAGGCATTTGAGAGC
GGGAGTTGGAGTCTCGGTTGTTGCGTGGGAGATTTTTTCTTCTTCGGTTG
TCTCGTGAAGAAAATTGAGTACATGTAGACGTACACCAGACAGAAGTGAG
TAGGGCTTCACAACATGGGTGGACGAGCGCTTTGAACTAATAACAAGCAA
TGACCTTTGCGTGTGGTATACATGACGCGCACACTTGATAGCTGAATGTT
TTGGTTTTGCCATTCATTTCACGTCGTCAGTGCTCGCATCATTTCTGCCG
CGTAGGAGCCCCAACCCGTGAAAACTGCCGGAGGTACTTTTTGGTGCCGT
CGTACTTTCTTGTGGCCTTGTAGTCGTCAATGTGATGAGTATGCTTGGAC
ACCACGGCGACACCGATCGCTTTTCCACCTTCGACCTAGTCTACACATCG
AAGAAACCCATGATTGCGCGGAATGGCCGCTAGGCCTCTCGCCTTTACCA
GTGCTTGAGGTGGCGGTCCGTTGGTGATGACGCGAGCGTGATGCAGCGTG
TGAGGGTGGCGGTCGGGGTTGAGAAAGCCCTCTGTGCGATAAACAGGTAC
AGCAGTAGCTGCCGGGCCCCTCTTTGATTGCTCTATCTAGGCTTTTCATA
ACGTTTGGTTGTGCTGCCGATGATGTAGAAGTACGTCCAACAAGTGTCCT
TGGTCCGGTCAGCTTATATATATATGTATAGCTTGCCGTCCCGCAGTTAA
AACCGCATTATACATTATGCGTGAGGCGTGAGGCTAGGTTTCGTCGTATC
TTGTCCACGTAGTCTAGGTATCCCCACGCCGACGATTAAAGGTTGTGTAG
TTGACCGGCCACCTCTTCTCTTGGACAAGGTCAAAACTTCATATGTTTGG
AAAATTGAAAATTGAGGTTCAAAGTTGTTGACTACCAAGTTCTTACGTGC
GGGCCGGCTGTGTTTCCCGTCTGCAAGACCAGGCGGACAGAACGCACAAA
CGCTTGGCCTGGCTAGGAGACGTTCCACAAAGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10656:772..3404+

>mRNA_E-fasciculatus_F_contig10656.521.1 ID=mRNA_E-fasciculatus_F_contig10656.521.1|Name=mRNA_E-fasciculatus_F_contig10656.521.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10656:772..3404+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCAAGCAGCTCATGGAGAACAACGCCACGGTAGACGTGGCGAAGGC
TCAGGCGGCCGGGGGAGGCGGTGAGGATGACCAGGGGAAAGGGGACGACG
CCTCCGCTAAGGAGCTGCTGATGCGGCCTCCCGGCGTGAACGCGTACAAC
TGTCGAAACATGTTCAAGCAGCTCATGGAGAACAACGCCACGGTAGACGT
GGCGAAGGCTCAGGCGGCCGGGGGAGGCGGTGAGGATGACCAGGGGAAAG
GGGACGACGCCTCCGCTAAGGAGCTGCTGATGCGGCCTCCCGGCGTGAAC
GCGTACAACTGTCGAAACGTACTCCGAAAAGTGGACACCATCGCCGAGCT
CAGCCAGCTCTCCGAGGAGAGCTGCGGCCCTTGCTTGGAGAGGGGAACGC
CTCCAAGCTCCTCAAGCTCTTCACACAGCCCGCCCCTGTGTAGTGTGTTG
TGAGTACTCCGAAAAGTGGACACCATCGCCGAGCTCAGCCAGCTCTCCGA
GGAGAGCTGCGGCCCTTGCTTGGAGAGGGGAACGCCTCCAAGCTCCTCAA
GCTCTTCACACAGCCCGCCCCTGTGTAGTGTGTTGTGA
back to top