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Homology
BLAST of mRNA_E-fasciculatus_F_contig1065.515.1 vs. uniprot
Match: A0A6H5K7G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G4_9PHAE) HSP 1 Score: 652 bits (1683), Expect = 5.380e-229 Identity = 402/501 (80.24%), Postives = 425/501 (84.83%), Query Frame = 1
Query: 160 VLRCLGPLSWLQCASVCSGWSDAILSPKPTTARASTALAVARESISGGASTAAA-AVLPAAAEQIATAPTSGTTSPAADTTETSTSDGGAEAVSGKGKGMAA-TAVVTADLWREFAVTVIRYNEPAAADCDTGGYVPNDSGSNDTNSCTYGFGHHHRFRHHTLTRNRNGRSKPLRALHPSSRCGAHSHFFRHVCLEGDPTVLGPPLRATIAASGGGTGRRETAIATVSLTDVSKAAEARFRRPRALVKFLWLWIRHSNTDHRQTTVPTIELTRNNLHFTYESPWDRRRGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLNEALGVFTKLFVLCRRCRRPCTTLYVSQDDANGIARNGTGGKESAG-AAAVIPEVRGRRVTLWVECQEDGCGWRSGMGIAAAAGGSTAPPPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQHRLNEARAKSVGLDALARRRSDEGDSDGLSDGSGASSSDEVN 1653
+LRCLGPLSWL CASVCSGWSDAILS KP TAR ALAVA E SGGASTA A V+PA ++ ATAPTSGTTSPAAD TE S SDGGAEAV+GK K AA TAVV DLWREFAVTVIRYN PA AD D GG SG++ +N T FG +HR+ HH LTR+R RSKPLRALHP SR GAH HFFRHVCLEGDPTVLGPPLRATIAASG GTGRRETAIATVSL DVSKAAEARFRRPRAL+KFLWLWIR+SNT+HR TTVPTIELT NN+ FTY+SP RRRG GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL+EALGVFTKLFVLC RCRRPCTTL+ +QDDA+ +A+N GGKESAG AAVIPEVRGRRVTLWVECQED CGWRSGM +AA APPPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQ RLNEARA SVGLDALARR SD GDSDG SDGSGASSSDE N
Sbjct: 1 MLRCLGPLSWLHCASVCSGWSDAILSRKPKTARGPAALAVAGEPTSGGASTAPAIVVVPAGEQETATAPTSGTTSPAADRTEASISDGGAEAVNGKEKAAAAATAVVKTDLWREFAVTVIRYNGPAVADRDIGG-----SGTSGSNCPTCSFGQNHRY-HHNLTRDR--RSKPLRALHPPSRGGAHGHFFRHVCLEGDPTVLGPPLRATIAASGSGTGRRETAIATVSLADVSKAAEARFRRPRALIKFLWLWIRYSNTEHRLTTVPTIELTPNNIQFTYKSPCGRRRGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LLSEALGVFTKLFVLCHRCRRPCTTLFANQDDASNVAQNVAGGKESAGRTAAVIPEVRGRRVTLWVECQEDWCGWRSGMSVAAGXXXXXAPPPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQRRLNEARANSVGLDALARRGSDGGDSDGFSDGSGASSSDEAN 492
BLAST of mRNA_E-fasciculatus_F_contig1065.515.1 vs. uniprot
Match: D7FLN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN6_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.310e-47 Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 1
Query: 1369 MGIAAAAGGSTAPPPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQHRLNEARAKSVGLDALARRRSDEGDSDGLSDGSGASSSDEVN 1653
M +AA GGSTAP PWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQ RLNEARA SVGLDALARR SD GD+DGLSDGSGASSSDEVN
Sbjct: 1 MSVAAGGGGSTAPSPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQRRLNEARANSVGLDALARRESDGGDNDGLSDGSGASSSDEVN 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_000450.1 |
| Exons | 4 |
| Model size | 1887 |
| Cds size | 1560 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1065.515.1 >prot_E-fasciculatus_F_contig1065.515.1 ID=prot_E-fasciculatus_F_contig1065.515.1|Name=mRNA_E-fasciculatus_F_contig1065.515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=520bp
MNGFGAIERALQMPELLTSVLRCLGPLSWLQCASVCSGWSDAILSPKPTT ARASTALAVARESISGGASTAAAAVLPAAAEQIATAPTSGTTSPAADTTE TSTSDGGAEAVSGKGKGMAATAVVTADLWREFAVTVIRYNEPAAADCDTG GYVPNDSGSNDTNSCTYGFGHHHRFRHHTLTRNRNGRSKPLRALHPSSRC GAHSHFFRHVCLEGDPTVLGPPLRATIAASGGGTGRRETAIATVSLTDVS KAAEARFRRPRALVKFLWLWIRHSNTDHRQTTVPTIELTRNNLHFTYESP WDRRRGTGGGSAAKTVAGPGSSRSSSSRSKKKANSPQSCCVTTTALLNEA LGVFTKLFVLCRRCRRPCTTLYVSQDDANGIARNGTGGKESAGAAAVIPE VRGRRVTLWVECQEDGCGWRSGMGIAAAAGGSTAPPPWLAKFARYVQSRA WKGINTLPEDHGTEWFSDTSPAAVQHRLNEARAKSVGLDALARRRSDEGD SDGLSDGSGASSSDEVNNK* back to topmRNA from alignment at E-fasciculatus_F_contig1065:3069..7353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1065.515.1 ID=mRNA_E-fasciculatus_F_contig1065.515.1|Name=mRNA_E-fasciculatus_F_contig1065.515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4285bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1065:3069..7353+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CAGCCTGATTGCGGATGCAGCCTGCAGCTTTGTGAGAGATCTGTTCGGCC
TCAGCTGCACCTTCAAGTTTCGCTCCATTGAGTCAAGGTATGCTACAACA
CTGCTGACAGCCTTTGTTCGTCGTACTTCATGCGGGTTATCGTTGCAGGT
ATGTAACCATATCGCCACAGCAGAGGAATGACGTGCACTATCGCGCTCGT
TATTTTCTCGGTGTGCATACGAATGATGCTACGTTGGCGTAACAAAATCA
CCGTTTCCGTGGAGAAAAACCTCAACAAACGTGACAAACGTGATGATTGT
ACTATTTCTTGCGCGAAACCGCCTTTGACAGAATATTGACAGCACCAAAA
AATGTAAAGACTTCCAACAAATCCCCTTCGACTTGGTTCTGTCTCGAACG
GGTAGTCTTTCTGTGTTTGTATTTGTATTTTTCTTCAAAAAATGCCCGAC
TCCCTCAGTCGAGTTTTCCTCGCACTCATCGCGTTTCACGGTCAAGACTT
GACGTTTCCTTTCCTCACAAGTGACCATCTCTTCTATTCTGATGCACATT
CCCTCAGTGATTAGACTATTCCTTCTTTTCTCGTGCCTCCCTGTAAGAGG
CACGGAGGAGGGGGGTCGTATATGCGTTTCCGCGCCACGTAGGCATATGT
ATGCTCGACGCATGAATTCGCGCGGACCGGCTCTTTTTCGCGGGGAGGTG
TTGCGCGAAAATGTGGCCTGGCGCACCAATGCTGAAATCTGTCCCTTTAA
GTATGCATAGAGCTGCCAGGAAAAATATGAGAGAGTGGGCAAACAATAGC
CTGCATGCTCGATTCACAGATGTCTCCCTTTTCCGACGACAACTGCAGGT
GAAGCTGATTGCGTGCACCCAAAAATCCTACCCATGCTGCTTGTTCGGCG
TGTGCTACAGCAGTATTATAGTGTGTGTCACTGTCCGCGTCACGTCGGGA
GGCTCGAAACCAACGTCCCGAAGGGTAGCCTTCTAAAGCTGTCATGTCAG
TTACCGCGGGGTTGTGTTGATGGCTGGCTGTCGATGGAGGTGCTGTGGTT
CCACCGAAAACGTGCGGTTGTTATAAAGTCAAGAGCTGTGCCTTTCGCAG
GACAGGAAGGAGGAAGGATGCCCGCCTGAGGCCGCACCTTAACCAGGCTA
CCAACCTCGCCATAAAACCCCTACAGTTGCCTTTGCCACGTCCTTTCCTG
GGGCCGCTCCATAGCCGCCCAGGTATATCAAATACACCCAGATCTATCTT
GTTACAAACTCCATCCGTCGCGATTCCAACCGATTTTCAACTAAATCACG
CATCAACTCCTGGACTCCAGGAATCAATGTTGCGGCCCAAAGGCGCCGCG
GCCAGTTGCTGACAGGCCCTTATTCATGCGGAGCAAACCGGAAAATCCGT
TGTTACTACACGGCGGTTATCTTGTGTCAATCAGAAATGCCACAATATGG
TGTGCTAGCGCCGGGTCGCCAGCCTACCGACGTTCCGTTGTTGTACCTGG
TTGCTTGCTGTCCCCGACTCCCACCCGCATCCACCATGCAGCAGCTTCGT
TTCACCATGAACGGGTTTGGTGCTATCGAGAGAGCGCTGCAGATGCCGGA
GCTGCTCACGAGCGTACTGCGGTGCCTTGGGCCGCTCTCGTGGCTGCAAT
GTGCCTCCGTCTGCTCTGGTTGGTCGGATGCCATTCTTTCTCCCAAGCCT
ACGACGGCAAGGGCGTCAACAGCATTGGCTGTTGCGAGAGAGTCGATATC
AGGAGGAGCATCAACAGCAGCGGCAGCAGTGTTACCGGCAGCAGCAGAAC
AAATAGCGACAGCACCAACATCAGGAACGACATCACCAGCAGCGGACACA
ACAGAAACGTCAACCTCTGACGGAGGAGCGGAGGCGGTGAGCGGGAAAGG
GAAGGGGATGGCGGCGACAGCGGTGGTCACGGCCGATCTCTGGCGCGAGT
TCGCGGTGACGGTGATTCGGTACAACGAACCAGCCGCCGCTGATTGCGAC
ACCGGGGGATATGTCCCCAACGATTCTGGCAGCAACGACACAAATAGTTG
CACGTACGGCTTCGGTCACCACCACCGCTTCCGTCACCACACCCTCACCC
GCAACCGCAATGGACGGAGTAAGCCCTTGCGGGCTTTGCATCCGTCGTCG
AGATGTGGCGCACACAGCCATTTCTTCAGACACGTTTGCCTTGAAGGAGA
CCCCACAGTGCTTGGACCACCGCTGCGGGCGACGATCGCGGCCAGCGGTG
GCGGGACCGGGCGGAGGGAGACGGCGATCGCGACCGTCAGCCTGACGGAC
GTTTCGAAGGCGGCGGAGGCTAGATTTCGACGACCGAGGTACTAGGAGAG
ATCGGTGTTCCTTTTCCACTTTCCCCGAAACTGCCTCTGAATTTCATGGA
AAAGGGTTCCCTTGAGCTGAACAATCCAAGCTGTGGAAACTGCGCGGCGG
TTTGGTCACCGATCCGCTCCCGATTGACGCAGAATTCCGGTGTTCAAGCG
TAGCGTCAGCAAAAAGCGTTGTTTGTATGGTTCGTGAAATTACAGACATA
CTGTATGGTTCATTTAGTAGACTGCAGCATAGGCGTACTGTGATCGATCG
TGTTTTTTGCGTTAATAGTTTTTCACCCCCTGAACGTTGTCGGTTTGCAT
GGTAGGCAAAGCTCTTTGAGGCAGCCGATGCGTTTTTTTGCTCTTGTTGC
TGGTCCCAAGACCAATTGCGAAAGTCCGTAGTCAGAGGTCTATAACTACA
TATCATGGTGAGAACAATCCCGCCCCCTTTCCACAATGCCATCGACGCGG
AGCATTCTCGGCTAAAAGTGCACAATTTATGATGCCCACGGACGCACTAC
CGCGGCAGGGCATTGGTTAAATTCCTGTGGCTGTGGATCCGCCACAGCAA
TACCGACCACCGGCAGACGACCGTTCCAACGATTGAGTTGACCCGGAACA
ATCTCCACTTCACATATGAATCCCCGTGGGACCGAAGGAGAGGCACCGGG
GGTGGCAGCGCAGCGAAAACTGTAGCGGGGCCAGGGTCATCGCGGAGCAG
CAGCAGCAGAAGCAAGAAGAAGGCAAATTCGCCACAGTCATGTTGCGTGA
CAACGACGGCGTTGCTTAACGAAGCTCTCGGTGTGTTCACGAAACTCTTC
GTGCTCTGCCGACGCTGCCGACGCCCGTGCACCACGCTGTACGTCAGCCA
AGACGACGCGAACGGCATTGCACGAAATGGTACTGGGGGAAAGGAGTCAG
CAGGAGCGGCGGCGGTCATACCCGAGGTTCGAGGAAGACGAGTGACGCTC
TGGGTAGAGTGTCAAGAAGATGGATGCGGCTGGAGGTCGGGAATGGGTAT
AGCTGCCGCTGCCGGCGGCAGTACGGCGCCACCACCTTGGCTGGCCAAGT
TTGCGAGATATGTGCAAAGCCGTGCATGGAAGGTGCGGTATTGCACACGA
AGGGAATGCATGTGTTTGTGCGTTGGGTCACGGTAGCGGCGTCATCCCGT
GTCCGAAAATGGTGCCACTACTGGGCGCTGCATTATTCATCAACATTGTG
GTTTGCGTTTGACAGGTTCGGGGGACCCAATCCAAGCTGTGTCTGGCCGG
TTCCCGCCAGATTTTGTGTCGGGGCGCGTTATTCGTGTCACAACTCTCCT
CCATTTCATCTTGCTCAATCTGGCACACAATAAGCCTCTCTTCCCTTTCA
TATATGTTATCCAACGTCATACCCAACTAGGTCGTCGATGACTTTGATCC
GTCCGCCCCTCTCCCCCTTGCATGCCATGATACCCACTGCATGATATGAA
CAATGCACGAAGAAAGCACCCGCCGATTCTCTTGGTTCGCATTTTCTGGT
GATCAGGGGATCAATACCCTTCCGGAGGACCATGGGACGGAGTGGTTCAG
CGACACGTCCCCAGCGGCGGTGCAGCACAGGCTAAATGAGGCAAGGGCGA
AATCGGTCGGCCTGGATGCCTTGGCGAGACGACGGAGCGATGAAGGAGAC
AGCGACGGCCTCAGCGACGGTAGTGGCGCCAGCAGCAGTGATGAGGTTAA
CAACAAGTAGTTGCTGCCGGAGGATACCGATGCAATTTTTTTGTTTTCGG
TGGTACGCACATGAAGCGCTTTCAAGTGCTTTATACGTTATACAGTTCCT
GTAGAGCACAGCAGTTGGCGGGGAAGTACGTACATCGTGGTGATGTCACT
CGACACCAAAATATCGCTGAGACTGACTCTATTTTTGCGGGGACGTGTCC
ACCAAGACAACGCCCACCGAACCAGTATTGAAAGT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1065:3069..7353+ >mRNA_E-fasciculatus_F_contig1065.515.1 ID=mRNA_E-fasciculatus_F_contig1065.515.1|Name=mRNA_E-fasciculatus_F_contig1065.515.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1065:3069..7353+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAACGGGTTTGGTGCTATCGAGAGAGCGCTGCAGATGCCGGAGCTGCT CACGAGCGTACTGCGGTGCCTTGGGCCGCTCTCGTGGCTGCAATGTGCCT CCGTCTGCTCTGGTTGGTCGGATGCCATTCTTTCTCCCAAGCCTACGACG GCAAGGGCGTCAACAGCATTGGCTGTTGCGAGAGAGTCGATATCAGGAGG AGCATCAACAGCAGCGGCAGCAGTGTTACCGGCAGCAGCAGAACAAATAG CGACAGCACCAACATCAGGAACGACATCACCAGCAGCGGACACAACAGAA ACGTCAACCTCTGACGGAGGAGCGGAGGCGGTGAGCGGGAAAGGGAAGGG GATGGCGGCGACAGCGGTGGTCACGGCCGATCTCTGGCGCGAGTTCGCGG TGACGGTGATTCGGTACAACGAACCAGCCGCCGCTGATTGCGACACCGGG GGATATGTCCCCAACGATTCTGGCAGCAACGACACAAATAGTTGCACGTA CGGCTTCGGTCACCACCACCGCTTCCGTCACCACACCCTCACCCGCAACC GCAATGGACGGAGTAAGCCCTTGCGGGCTTTGCATCCGTCGTCGAGATGT GGCGCACACAGCCATTTCTTCAGACACGTTTGCCTTGAAGGAGACCCCAC AGTGCTTGGACCACCGCTGCGGGCGACGATCGCGGCCAGCGGTGGCGGGA CCGGGCGGAGGGAGACGGCGATCGCGACCGTCAGCCTGACGGACGTTTCG AAGGCGGCGGAGGCTAGATTTCGACGACCGAGATGAACGGGTTTGGTGCT ATCGAGAGAGCGCTGCAGATGCCGGAGCTGCTCACGAGCGTACTGCGGTG CCTTGGGCCGCTCTCGTGGCTGCAATGTGCCTCCGTCTGCTCTGGTTGGT CGGATGCCATTCTTTCTCCCAAGCCTACGACGGCAAGGGCGTCAACAGCA TTGGCTGTTGCGAGAGAGTCGATATCAGGAGGAGCATCAACAGCAGCGGC AGCAGTGTTACCGGCAGCAGCAGAACAAATAGCGACAGCACCAACATCAG GAACGACATCACCAGCAGCGGACACAACAGAAACGTCAACCTCTGACGGA GGAGCGGAGGCGGTGAGCGGGAAAGGGAAGGGGATGGCGGCGACAGCGGT GGTCACGGCCGATCTCTGGCGCGAGTTCGCGGTGACGGTGATTCGGTACA ACGAACCAGCCGCCGCTGATTGCGACACCGGGGGATATGTCCCCAACGAT TCTGGCAGCAACGACACAAATAGTTGCACGTACGGCTTCGGTCACCACCA CCGCTTCCGTCACCACACCCTCACCCGCAACCGCAATGGACGGAGTAAGC CCTTGCGGGCTTTGCATCCGTCGTCGAGATGTGGCGCACACAGCCATTTC TTCAGACACGTTTGCCTTGAAGGAGACCCCACAGTGCTTGGACCACCGCT GCGGGCGACGATCGCGGCCAGCGGTGGCGGGACCGGGCGGAGGGAGACGG CGATCGCGACCGTCAGCCTGACGGACGTTTCGAAGGCGGCGGAGGCTAGA TTTCGACGACCGAGGGCATTGGTTAAATTCCTGTGGCTGTGGATCCGCCA CAGCAATACCGACCACCGGCAGACGACCGTTCCAACGATTGAGTTGACCC GGAACAATCTCCACTTCACATATGAATCCCCGTGGGACCGAAGGAGAGGC ACCGGGGGTGGCAGCGCAGCGAAAACTGTAGCGGGGCCAGGGTCATCGCG GAGCAGCAGCAGCAGAAGCAAGAAGAAGGCAAATTCGCCACAGTCATGTT GCGTGACAACGACGGCGTTGCTTAACGAAGCTCTCGGTGTGTTCACGAAA CTCTTCGTGCTCTGCCGACGCTGCCGACGCCCGTGCACCACGCTGTACGT CAGCCAAGACGACGCGAACGGCATTGCACGAAATGGTACTGGGGGAAAGG AGTCAGCAGGAGCGGCGGCGGTCATACCCGAGGTTCGAGGAAGACGAGTG ACGCTCTGGGTAGAGTGTCAAGAAGATGGATGCGGCTGGAGGTCGGGAAT GGGTATAGCTGCCGCTGCCGGCGGCAGTACGGCGCCACCACCTTGGCTGG CCAAGTTTGCGAGATATGTGCAAAGCCGTGCATGGAAGGGCATTGGTTAA ATTCCTGTGGCTGTGGATCCGCCACAGCAATACCGACCACCGGCAGACGA CCGTTCCAACGATTGAGTTGACCCGGAACAATCTCCACTTCACATATGAA TCCCCGTGGGACCGAAGGAGAGGCACCGGGGGTGGCAGCGCAGCGAAAAC TGTAGCGGGGCCAGGGTCATCGCGGAGCAGCAGCAGCAGAAGCAAGAAGA AGGCAAATTCGCCACAGTCATGTTGCGTGACAACGACGGCGTTGCTTAAC GAAGCTCTCGGTGTGTTCACGAAACTCTTCGTGCTCTGCCGACGCTGCCG ACGCCCGTGCACCACGCTGTACGTCAGCCAAGACGACGCGAACGGCATTG CACGAAATGGTACTGGGGGAAAGGAGTCAGCAGGAGCGGCGGCGGTCATA CCCGAGGTTCGAGGAAGACGAGTGACGCTCTGGGTAGAGTGTCAAGAAGA TGGATGCGGCTGGAGGTCGGGAATGGGTATAGCTGCCGCTGCCGGCGGCA GTACGGCGCCACCACCTTGGCTGGCCAAGTTTGCGAGATATGTGCAAAGC CGTGCATGGAAGGGGATCAATACCCTTCCGGAGGACCATGGGACGGAGTG GTTCAGCGACACGTCCCCAGCGGCGGTGCAGCACAGGCTAAATGAGGCAA GGGCGAAATCGGTCGGCCTGGATGCCTTGGCGAGACGACGGAGCGATGAA GGAGACAGCGACGGCCTCAGCGACGGTAGTGGCGCCAGCAGCAGTGATGA GGTTAACAACAAGTAGGGGATCAATACCCTTCCGGAGGACCATGGGACGG AGTGGTTCAGCGACACGTCCCCAGCGGCGGTGCAGCACAGGCTAAATGAG GCAAGGGCGAAATCGGTCGGCCTGGATGCCTTGGCGAGACGACGGAGCGA TGAAGGAGACAGCGACGGCCTCAGCGACGGTAGTGGCGCCAGCAGCAGTG ATGAGGTTAACAACAAGTAG back to top
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