prot_E_fasciculatus_S2_contig9375.17425.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9375.17425.1
Unique Nameprot_E_fasciculatus_S2_contig9375.17425.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length118
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.570e-31
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 0 
Query:   16 RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKQXXXXXXXXXXXXXXXXXPFLQGQGPGGSGV----------GHYGPASAPXXXXRPDLPYGAPPGDLQGIGMMAP 112
            RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPK XXXXXXXXXXXXXXXXX FL    P G G           GHYGPA+      RPDLPYGAPPGDLQGIGMMAP
Sbjct:  564 RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKXXXXXXXXXXXXXXXXXXXFLGLNAPPGGGXXXXXXXXXXXGHYGPAAGAPPPPRPDLPYGAPPGDLQGIGMMAP 670
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.390e-10
Identity = 44/89 (49.44%), Postives = 44/89 (49.44%), Query Frame = 0 
Query:   34 DHWWLDCPLKNVPKQXXXXXXXXXXXXXXXXXPFLQGQGPGGSGVGHYGPASAPXXXX----------RPDLPYGAPPGDLQGIGMMAP 112
            DH WLDCPLKNVPKQ                 PFL    P G            XXXX          RPDLPYGAPPGDLQGIGMMAP
Sbjct:  560 DHLWLDCPLKNVPKQNHVCHNCGNPGHFRQYCPFLGLNAPPGXXXXXXXXXXXXXXXXXXXXXXXXXPRPDLPYGAPPGDLQGIGMMAP 648
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKW8_ECTSI2.570e-3175.70CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUK6_9PHAE5.390e-1049.44CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 26..42
e-value: 0.58
score: 12.7
coord: 51..67
e-value: 0.039
score: 19.9
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 52..66
e-value: 0.002
score: 18.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 52..66
score: 9.471
NoneNo IPR availableGENE3D4.10.60.10coord: 8..73
e-value: 2.7E-11
score: 45.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 16..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9375contigE_fasciculatus_S2_contig9375:4347..5349 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9375.17425.1mRNA_E_fasciculatus_S2_contig9375.17425.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9375 4347..5349 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9375.17425.1 ID=prot_E_fasciculatus_S2_contig9375.17425.1|Name=mRNA_E_fasciculatus_S2_contig9375.17425.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
GRNGGRGGAWDSAGRRPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKQNH
VCLNCGNPGHFRQYCPFLQGQGPGGSGVGHYGPASAPPPPPRPDLPYGAP
PGDLQGIGMMAPPPPLVP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC