mRNA_E_fasciculatus_S2_contig9375.17425.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9375.17425.1
Unique NamemRNA_E_fasciculatus_S2_contig9375.17425.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.570e-31
Identity = 81/107 (75.70%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:   46 RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKQXXXXXXXXXXXXXXXXXPFLQGQGPGGSGV----------GHYGPASAPXXXXRPDLPYGAPPGDLQGIGMMAP 336
            RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPK XXXXXXXXXXXXXXXXX FL    P G G           GHYGPA+      RPDLPYGAPPGDLQGIGMMAP
Sbjct:  564 RPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKXXXXXXXXXXXXXXXXXXXFLGLNAPPGGGXXXXXXXXXXXGHYGPAAGAPPPPRPDLPYGAPPGDLQGIGMMAP 670
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BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.390e-10
Identity = 44/89 (49.44%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:  100 DHWWLDCPLKNVPKQXXXXXXXXXXXXXXXXXPFLQGQGPGGSGVGHYGPASAPXXXX----------RPDLPYGAPPGDLQGIGMMAP 336
            DH WLDCPLKNVPKQ                 PFL    P G            XXXX          RPDLPYGAPPGDLQGIGMMAP
Sbjct:  560 DHLWLDCPLKNVPKQNHVCHNCGNPGHFRQYCPFLGLNAPPGXXXXXXXXXXXXXXXXXXXXXXXXXPRPDLPYGAPPGDLQGIGMMAP 648
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9375.17425.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CCHC-type2.570e-3175.70domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CCHC-type5.390e-1049.44domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9375contigE_fasciculatus_S2_contig9375:4347..5349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.5
Seed ortholog evalue4.2e-27
Seed eggNOG ortholog2880.D8LKW8
Preferred nameWDR33
Model size355
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
Exons2
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
Cds size354
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.8345082-CDS-E_fasciculatus_S2_contig9375:4346..46011696842586.8345082-CDS-E_fasciculatus_S2_contig9375:4346..4601Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9375 4347..4601 -
1696842586.84871-CDS-E_fasciculatus_S2_contig9375:5250..53491696842586.84871-CDS-E_fasciculatus_S2_contig9375:5250..5349Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9375 5251..5349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9375.17425.1prot_E_fasciculatus_S2_contig9375.17425.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9375 4347..5349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9375.17425.1

>prot_E_fasciculatus_S2_contig9375.17425.1 ID=prot_E_fasciculatus_S2_contig9375.17425.1|Name=mRNA_E_fasciculatus_S2_contig9375.17425.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
GRNGGRGGAWDSAGRRPTSRPAKSYVCKRCGGNDHWWLDCPLKNVPKQNH
VCLNCGNPGHFRQYCPFLQGQGPGGSGVGHYGPASAPPPPPRPDLPYGAP
PGDLQGIGMMAPPPPLVP
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mRNA from alignment at E_fasciculatus_S2_contig9375:4347..5349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9375.17425.1 ID=mRNA_E_fasciculatus_S2_contig9375.17425.1|Name=mRNA_E_fasciculatus_S2_contig9375.17425.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1003bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9375:4347..5349- (Ectocarpus fasciculatus EfasUO2)
GGGCGAAATGGGGGGAGGGGGGGGGCATGGGATTCGGCCGGACGGCGTCC
TACCAGCCGGCCTGCCAAGAGCTACGTCTGCAAACGCTGCGGCGGAAATG
TGGGTATAGGATGTCCGCGTGGCTGACTTTGTTCTTGTTGTTGTTGCGAT
GCGCAGCTAGGTTTCGTGTTTGTGATTTGTCATCTTTTGTTTGTTTTTTT
GTCGGGTGTTTTAATCCCCCTTTGTTCCCGTGACTGAAATTTCGTGGCAA
CACTTTGTCATGTATTATCCCCTCGCTGCAACTTCTTCTGCCTCAACCGT
TGCCGCCCTTCCAGTTCCCCCGTTGCCATTGTTCTCACTTGTCGCAACTC
GTAATCTACTGGGCGCCAGCTATTTTTTTGTATTCGACTCCTTGCTACTG
TAGGGGAGCGGCACTGACGGCAACTGGTTTCGTTCGTTTTGCCAATCAAG
GATTTTTATATTTTCTGTCTGCTTGTTTTCTTTGCCCAACATCTTGGTTT
TGGCGCATGTTTCGCGCTGTTGTTCGCGTGCTCGCCGTCCTACTTCTCTC
TTTGTTCCGCCTTGACCTGTGATGGGAAATATGATACCACTCGCTTTTTG
TTCTTGCGTTGCACGCGCATCACTGGCGGAAAAGTAACGCTACCAATCAC
CCTCCCCCCGACAACATCGAACACCACCACATTCCGCAACCACCGCCACC
AACGCGCACAATATTCGTCACACCGACCGACCGACACACACGTGGCAGGA
CCACTGGTGGCTCGACTGCCCGCTCAAGAACGTCCCGAAGCAGAACCACG
TCTGCCTCAACTGCGGCAACCCGGGTCACTTTCGCCAATACTGCCCGTTC
CTACAAGGCCAAGGCCCCGGGGGCAGCGGTGTCGGCCACTACGGTCCCGC
CAGCGCCCCCCCCCCCCCTCCGCGGCCAGACCTACCATACGGTGCCCCCC
CCGGTGATTTGCAGGGCATCGGGATGATGGCTCCGCCTCCACCACTGGTG
CCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9375:4347..5349-

>mRNA_E_fasciculatus_S2_contig9375.17425.1 ID=mRNA_E_fasciculatus_S2_contig9375.17425.1|Name=mRNA_E_fasciculatus_S2_contig9375.17425.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9375:4347..5349- (Ectocarpus fasciculatus EfasUO2)
GGGCGAAATGGGGGGAGGGGGGGGGCATGGGATTCGGCCGGACGGCGTCC
TACCAGCCGGCCTGCCAAGAGCTACGTCTGCAAACGCTGCGGCGGAAATG
ACCACTGGTGGCTCGACTGCCCGCTCAAGAACGTCCCGAAGCAGAACCAC
GTCTGCCTCAACTGCGGCAACCCGGGTCACTTTCGCCAATACTGCCCGTT
CCTACAAGGCCAAGGCCCCGGGGGCAGCGGTGTCGGCCACTACGGTCCCG
CCAGCGCCCCCCCCCCCCCTCCGCGGCCAGACCTACCATACGGTGCCCCC
CCCGGTGATTTGCAGGGCATCGGGATGATGGCTCCGCCTCCACCACTGGT
GCCG
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