prot_E_fasciculatus_S2_contig933.17389.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig933.17389.1
Unique Nameprot_E_fasciculatus_S2_contig933.17389.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length158
Homology
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 4.790e-53
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0
Query:    1 MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVNSPTPK 89
            MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV  P  K
Sbjct:    1 MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQK 89          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.560e-41
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            AVGVPIKLLHEGEGH +T+EMKNGEIYRG L EAEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPV
Sbjct:    6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPV 86          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.580e-36
Identity = 57/79 (72.15%), Postives = 72/79 (91.14%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAP 82
            +GVPI++LHEGEGH ++VE++NGEIYRG L EAEDTMNCF+  VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P
Sbjct:    6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSP 84          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 129 bits (324), Expect = 6.920e-36
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            +GVP+KLLHE EGH VT E+KNGEIYRG L+EAEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPV
Sbjct:    6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPV 85          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: K3WSP0_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD)

HSP 1 Score: 127 bits (319), Expect = 4.220e-35
Identity = 57/82 (69.51%), Postives = 72/82 (87.80%), Query Frame = 0
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVNS 85
            VGVPI LLHEGEG  VT+E+KNGEIYRGHL E+ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+ S
Sbjct:    5 VGVPIALLHEGEGRNVTIELKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFS 86          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A5D6XZW3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.110e-34
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            +VGVPI LLHEGEG  VTVE+KNGEIYRGHL E+ED+MNC M  V +T RDG+  KLEQVY+RGSHIKLV+LPDVLKN+P+
Sbjct:    5 SVGVPIALLHEGEGRSVTVELKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPL 85          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A8J2SMY3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMY3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.710e-34
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 0
Query:    2 AAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            A VGVPIKLLHEGEGH VTVE+K+GEIYRG L+E+E+TMNC +T +  T RDGRVSK+E VY+RGS IK ++LPD+LK++PV
Sbjct:    6 AQVGVPIKLLHEGEGHVVTVELKSGEIYRGRLDESEETMNCSLTDIVCTARDGRVSKMEHVYIRGSRIKFLILPDLLKHSPV 87          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: F0Y2Z6_AURAN (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN)

HSP 1 Score: 124 bits (312), Expect = 4.710e-34
Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIK-----LVVLPDVLKNAPV 83
            AVGVPIKLLHEGEGH VT+E+KNGEIYRGHL+E+E+TMNC +T V +T RDGRV+KLE VY+RGS IK      ++LPD+LK++PV
Sbjct:    7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPV 92          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: A0A6A3Q7G3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q7G3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.950e-33
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            +VGVPI LLHEGEG  VTVE+KNGE+YRGHL E+ED+MNC ++ V +T RDG+ SKLE VY+RGS IKLVVLPDVLKN+P+
Sbjct:    4 SVGVPISLLHEGEGRTVTVELKNGEVYRGHLAESEDSMNCQLSDVLLTARDGQKSKLELVYVRGSQIKLVVLPDVLKNSPL 84          
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Match: T0QL39_SAPDV (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV)

HSP 1 Score: 122 bits (305), Expect = 5.430e-33
Identity = 52/81 (64.20%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPV 83
            ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+
Sbjct:    4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPL 84          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig933.17389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI4.790e-5395.51Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA5.560e-4183.95Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A7S2S181_9STRA2.580e-3672.15Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A6S9H3G1_HETAK6.920e-3672.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
K3WSP0_GLOUD4.220e-3569.51Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
A0A5D6XZW3_9STRA1.110e-3474.07Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pyth... [more]
A0A8J2SMY3_9STRA3.710e-3469.51Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pela... [more]
F0Y2Z6_AURAN4.710e-3468.60Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aure... [more]
A0A6A3Q7G3_9STRA2.950e-3371.60Small nuclear ribonucleoprotein Sm D3 n=3 Tax=Phyt... [more]
T0QL39_SAPDV5.430e-3364.20Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Sapr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.8E-14
score: 62.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..73
e-value: 1.8E-14
score: 53.2
NoneNo IPR availableGENE3D2.30.30.100coord: 1..84
e-value: 9.3E-29
score: 100.7
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 4..86
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 4..86
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig933contigE_fasciculatus_S2_contig933:20549..23862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig933.17389.1mRNA_E_fasciculatus_S2_contig933.17389.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig933 20293..24143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig933.17389.1 ID=prot_E_fasciculatus_S2_contig933.17389.1|Name=mRNA_E_fasciculatus_S2_contig933.17389.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp
MAAVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMT
GRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVNSPTPKCCTSSSPACTG
VFFLPCHSCIHHPCVDGGLQFPSQEASSHSNPASRHSGENNACHGVYASK
RFFAVQH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3
IPR001163LSM_dom_euk/arc