prot_E_fasciculatus_S2_contig9107.17186.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9107.17186.1
Unique Nameprot_E_fasciculatus_S2_contig9107.17186.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length332
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 566 bits (1460), Expect = 3.980e-200
Identity = 283/319 (88.71%), Postives = 295/319 (92.48%), Query Frame = 0
Query:    9 EQSGTTHWVGFSSCRKRAWGMQGSTTNGVLPIGIADSIRKAGCLFLDSTRGAVEGLSEMKDLAGIDTSRIFAFDGRHAAILVTEDRTRVFCQQISAGLYDLGVSTEPRPDWQDILDVAASSLSTDGHGSSARGAVGGMEPLFKALPLWASVVHLAPHRVSIHQRSADGVTDGVAFQHSLINGDGGLVSTGKEEMYHNSVQDAFVIFNTHPSGSTRFIEQSRALTSGHTRSSEARRMVPKKTSPPRRRRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGFSPGNNNEVNKKLGQAWKELTTEEKNCYQARSDVDKCRYLK 327
              +GTTHWVGFSSCRKR WGMQGS  NGVLPIGIAD IR AGCLFL+STRGAVEGLSEMKDLA IDTSRIFAFDGRHAAILVTED TRVFCQQISAGLYDLGVS EPRPDWQDILD AASSL  DG GS+A GAV GMEPLFKA+PLWASVVH+APHRVS+HQRSADG TDGVAFQHSL++GDGGLVST KEEMYH+SVQDAFVIFNTHPSGSTRF+E SRALTSGHT SSE RR VPKKTSPP+R+RKDPNRPRGYVSAFNFFVKDKRSAYVRDAQG SPGNNNEVNK LGQAWKELTTEEKNCYQARSDVDKCRYLK
Sbjct:   44 SSAGTTHWVGFSSCRKRVWGMQGSNANGVLPIGIADRIRNAGCLFLNSTRGAVEGLSEMKDLAEIDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAASSLIPDGVGSNACGAVSGMEPLFKAVPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMYHSSVQDAFVIFNTHPSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 362          
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 2.120e-193
Identity = 274/299 (91.64%), Postives = 284/299 (94.98%), Query Frame = 0
Query:   29 MQGSTTNGVLPIGIADSIRKAGCLFLDSTRGAVEGLSEMKDLAGIDTSRIFAFDGRHAAILVTEDRTRVFCQQISAGLYDLGVSTEPRPDWQDILDVAASSLSTDGHGSSARGAVGGMEPLFKALPLWASVVHLAPHRVSIHQRSADGVTDGVAFQHSLINGDGGLVSTGKEEMYHNSVQDAFVIFNTHPSGSTRFIEQSRALTSGHTRSSEARRMVPKKTSPPRRRRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGFSPGNNNEVNKKLGQAWKELTTEEKNCYQARSDVDKCRYLK 327
            MQGS TNGVLPIG ADSIRKAGCLFL+ST GAVEGLSE+KDLAGIDTSRIFAFDGRHAAILVTED TRVFCQQISAGLYDLGVS EPRPDWQDILD AASSL  DG GS+A GAVGGMEPLF ALPLWASVVH+APHRVS+HQRS+DGVTDGVAFQHSL+NGDGGLVST KEEMYHNSVQDAFVIFNTHPSGSTRF+E S+ALTSGHTRSSEARRMVPKKTSPPRR+RKDPNRPRGYVSAFNFFVKDKRSAYVRDAQG SPGNNNEVNK LGQAWKELTTEEKNCYQARSDVDKCRYLK
Sbjct:    1 MQGSNTNGVLPIGFADSIRKAGCLFLNSTLGAVEGLSEVKDLAGIDTSRIFAFDGRHAAILVTEDCTRVFCQQISAGLYDLGVSIEPRPDWQDILDAAASSLIPDGVGSNACGAVGGMEPLFNALPLWASVVHVAPHRVSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSVQDAFVIFNTHPSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDVDKCRYLK 299          
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Match: A0A2Z4MTA2_SACJA (HMG-box containing protein isoform 1 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MTA2_SACJA)

HSP 1 Score: 250 bits (638), Expect = 1.220e-76
Identity = 145/309 (46.93%), Postives = 191/309 (61.81%), Query Frame = 0
Query:   29 MQGSTTNGVLPIGIADSIRKAGCLFLDSTRGAVEGLSEMKDLAGIDTSRIFAFDGRHAAILVTEDRTRVFCQQISAGLYDLGVSTEPRPDWQDILDVAASSLSTDGHGSSARGAVGGMEPLFK--ALPLWASVVHLAPHRVSIHQRSADGVTDGVAFQHSLINGDGGLVSTGKEEMYHNSVQDAFVIFNTHPSGSTRFIEQSRALTSGHTRSSEAR-RMVPKKTSPPRRRRKDPNRPRGYVSAFNFFVKDKRSAYVR---DAQGFSPGNNNEVNKKLGQAWKELTTEEKNCYQARSDVDKCRYLKVSRA 331
            M+GS  +   P+ + D +R AG LFLD    A+  LS   DL GID SRIFA+DG HAAILVTE R R+FCQQ+S GLYDLGVS   R DW+D L    +SL      S A GA  G+    +  + P W+SVVH+AP RV++HQR AD  T+G++  +     +   +         ++VQDAFVIF TH     RF + + AL  G +R S+ + R+  +  + P+R +KDPNRPRGY+SAFNFFVKDKR  YV+   +AQG S  +NNE+NK LG+ WK  T +EK  Y+ ++  DK RYLK   A
Sbjct:    1 MEGSFRDDGPPVDLFDGVRNAGLLFLDLGCEALASLSAANDLHGIDRSRIFAYDGVHAAILVTEGRRRIFCQQVSCGLYDLGVSINSRSDWRDALSATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSRVAVHQRCADEATEGLSVHYFRTMVEDRHLGLSSIHDRQDNVQDAFVIFGTHSRHPVRFRQHTGALGHGRSRYSKPQTRVAYESATAPKRHKKDPNRPRGYISAFNFFVKDKRPTYVQSRPNAQGHSLEHNNEINKMLGKVWKTATEQEKKTYEEKATADKVRYLKEMSA 309          
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Match: A0A2Z4MT98_SACJA (HMG-box containing protein isoform 2 n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4MT98_SACJA)

HSP 1 Score: 129 bits (324), Expect = 6.390e-32
Identity = 73/150 (48.67%), Postives = 90/150 (60.00%), Query Frame = 0
Query:   29 MQGSTTNGVLPIGIADSIRKAGCLFLDSTRGAVEGLSEMKDLAGIDTSRIFAFDGRHAAILVTEDRTRVFCQQISAGLYDLGVSTEPRPDWQDILDVAASSLSTDGHGSSARGAVGGMEPLFK--ALPLWASVVHLAPHRVSIHQRSADG 176
            M+GS  +   P+ + D +R AG LFLD    A+  LS   DL GID SRIFA+DG HAAILVTE R R+FCQQ+S GLYDLGVS   R DW+D L    +SL      S A GA  G+    +  + P W+SVVH+AP R     R  +G
Sbjct:    1 MEGSFRDDGPPVDLFDGVRNAGLLFLDLGCEALASLSAANDLHGIDRSRIFAYDGVHAAILVTEGRRRIFCQQVSCGLYDLGVSINSRSDWRDALSATVTSLIMGSTESIAGGAPCGLNSRSEWFSSPAWSSVVHMAPSREMSAYRPPEG 150          
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Match: A0A7J6V6Z4_THATH (High mobility group b protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V6Z4_THATH)

HSP 1 Score: 55.8 bits (133), Expect = 3.520e-5
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0
Query:  248 KTSPPRRRRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGFSPGNNNEVNKKLGQAWKELTTEEKNCYQARSDVDKCRYLK 327
            +T   R+R +DP RP+ Y SA+NFF  DKRS    + +   P    +  K +G+AW  LT EEK  YQ     DK RY K
Sbjct:  216 RTKKKRQRLEDPARPKRYRSAYNFFFSDKRS----ELKTLCPHRERDFTKMIGEAWNNLTGEEKKVYQEIGTRDKERYQK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9107.17186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSJ1_9PHAE3.980e-20088.71HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G5V4_ECTSI2.120e-19391.64HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2Z4MTA2_SACJA1.220e-7646.93HMG-box containing protein isoform 1 n=1 Tax=Sacch... [more]
A0A2Z4MT98_SACJA6.390e-3248.67HMG-box containing protein isoform 2 n=1 Tax=Sacch... [more]
A0A7J6V6Z4_THATH3.520e-542.50High mobility group b protein n=1 Tax=Thalictrum t... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 261..331
e-value: 1.2E-6
score: 38.1
IPR009071High mobility group box domainPFAMPF09011HMG_box_2coord: 259..325
e-value: 1.5E-10
score: 41.5
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 262..331
score: 11.602
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 244..331
e-value: 2.0E-16
score: 62.0
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 246..327
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 245..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9107contigE_fasciculatus_S2_contig9107:470..4710 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9107.17186.1mRNA_E_fasciculatus_S2_contig9107.17186.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9107 470..4710 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9107.17186.1 ID=prot_E_fasciculatus_S2_contig9107.17186.1|Name=mRNA_E_fasciculatus_S2_contig9107.17186.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=332bp
MSALLVAFEQSGTTHWVGFSSCRKRAWGMQGSTTNGVLPIGIADSIRKAG
CLFLDSTRGAVEGLSEMKDLAGIDTSRIFAFDGRHAAILVTEDRTRVFCQ
QISAGLYDLGVSTEPRPDWQDILDVAASSLSTDGHGSSARGAVGGMEPLF
KALPLWASVVHLAPHRVSIHQRSADGVTDGVAFQHSLINGDGGLVSTGKE
EMYHNSVQDAFVIFNTHPSGSTRFIEQSRALTSGHTRSSEARRMVPKKTS
PPRRRRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGFSPGNNNEVNKKLG
QAWKELTTEEKNCYQARSDVDKCRYLKVSRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom