prot_E_fasciculatus_S2_contig8570.16697.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8570.16697.1
Unique Nameprot_E_fasciculatus_S2_contig8570.16697.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length547
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 804 bits (2077), Expect = 5.000e-284
Identity = 457/553 (82.64%), Postives = 475/553 (85.90%), Query Frame = 0
Query:    1 MTAENGQSSSSGKGANSNQLRLLPGTVVLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMTGRLPLGSVTGAGGADGDE------SXXXXXXXASVVAGWVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPGETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSPGGGSXXXXXXXXXXXTGVGAEGEVLPADVGDGAVGIREEGGREGTVDAQGRSERKIEEXXXXXXXXXLREPVLISVGGFKAMDQSVAVTREVADFCRVVGEVKRAAAAAAEGVAAGYGDAAAAEEGGAGSALARAGLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQREEEEGGRPGEEGGEAGRDEAGEEGGVIPWSAEALAAAAALGGERARRGANYGKRRPLEEVGAPAPFGRHIMNEKHRHDFRGASFGVYCIDGAGTSFLDDAFSVDPETREVFIHITDVQGMVPTG 547
            MTAEN QSSS+G     NQLRLLPGTV+LQPGDPIEFWHAQGLVLGNYESPVPGRQSL+VRTEAGEPLTIDAGQIVGVWREDEM+G LPLG VT   GADGD+      S  XXXXXA+VVAGW EVRE+ RALLQG PARGLD+GAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPF+FRSPGE FRPSAVERAAAAQVLAGERSRFKRVVSKRLG AGVSP G              G GAEGEVL ADVGDGAVG+R  GGR GTV+AQ R ERK EE         L +PVLISVGGFKA+DQSVAVTREVADFCRVVGEVKRAAAA   GVAAGYGDAAAAEEGGAGSALARA LFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMV+ITGKAN TAAK ILVDVGLWTSRRQ EE  GG+PGEE GE GRDEAGEEGGVIPWSAEAL AA ALGGERARR  NYGKRRPLEEVGAPAPFGRH++     HDFRGASFGVYCIDGAGT FLDDAFSVDPETREVFIHITDVQG+VPTG
Sbjct:    1 MTAENDQSSSTGN----NQLRLLPGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLLVRTEAGEPLTIDAGQIVGVWREDEMSGHLPLGRVTA--GADGDDGGDXXSSAAXXXXXAAVVAGWAEVREKIRALLQGMPARGLDVGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFQFRSPGEAFRPSAVERAAAAQVLAGERSRFKRVVSKRLGPAGVSPDGRGGRRKQRARGAGKGGGAEGEVLVADVGDGAVGVRGGGGRGGTVNAQCRDERKQEEEED------LSQPVLISVGGFKAVDQSVAVTREVADFCRVVGEVKRAAAA---GVAAGYGDAAAAEEGGAGSALARARLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVDITGKANSTAAKCILVDVGLWTSRRQPEEG-GGKPGEEVGEVGRDEAGEEGGVIPWSAEALEAATALGGERARRRVNYGKRRPLEEVGAPAPFGRHVL-----HDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTG 532          
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.600e-20
Identity = 131/492 (26.63%), Postives = 180/492 (36.59%), Query Frame = 0
Query:  118 WVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPG---------------ETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSPGGGSXXXXXXXXXXXTGVGAEGEVLPADVGDGAVGIREEGGREGTVDAQGRSERKIEEXXXXXXXXXLREPVL-ISVGGFKAMDQSVAVTREVADFCRVVGEVKRAAAAAAEGVAAGYGDAAAAEEGGAGSALARAG----------------------------LFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITGKANPTAAKSILVDVGLWTSRRQREEEEGGRPGEEGGEAGRDEAGEEGGV---------------IPWSAEALAAAAALGGERARRGANYGK---RRPLEEVGAPAPFGRHIMNEKHRHDFRGASFGVYCIDGAGTSFLDDAFSVDPETREVFIHITDVQGMVPTG 547
            W  +++E R LL   P R LDL   W+ A  +GKG V++    A +LFG  +  + G +    F+  S                   + PSA ER AA  VLA +  RFKRV                                   VL                                            +PV+ +  GGFK +DQSV  T +   F  +V +    A   A    A   DAAAA          +A                             L + +   I+HSLE  A+GG    L+P+AK  + ++  +    AA ++LV +G WT R ++            G A                          +PWSAEAL AAA +   R RR A Y +     P   +GAP P GR         D+RGA+F VYC+D    +F DDA S DP+ RE+ IH+ D Q +V  G
Sbjct:   12 WPLLQQEARRLLSRMPPRSLDLHDLWKLARGKGKGVVLSTCDVARWLFGGGA-RRGGKQHAQSFQLTSQQGHASSDFELQQQQQQPVWAPSAAERVAAGLVLAADLQRFKRVPC---------------------------------VLRHS-----------------------------------------DPVVSVCEGGFKPVDQSVVATNQAMSFATMVKDQFSTAQPPAPASDA-TSDAAAAXXPAPKVPAPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSDASRRQIVHSLEMLALGGSADGLLPQAKAALRQMGHEPTAAAAHAVLVQMGAWTERARKPS---------AGTAXXXXXXXXXXXXXXXXXXXXXXXXXXVPWSAEALRAAADVAALRRRREAQYARGPLAAPRTPLGAPLPNGR--------RDYRGAAFSVYCVDAPSANFYDDAVSWDPDARELLIHVVDAQLLVEDG 410          
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs. uniprot
Match: A0A0M0LQR4_9EUKA (Weakly cyanobacterial exoribonuclease (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQR4_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-8
Identity = 56/202 (27.72%), Postives = 80/202 (39.60%), Query Frame = 0
Query:   28 VLQPGDPIEFWHAQGLVLGNYESPVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMTGRLPLGSVTGAGGADGDESXXXXXXXASVVAGWVEVREETRALLQGTPARGLDLGAFWRAASSRGKGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSP---GETFRPSAVERAAAAQVLAGERSRFKRVVSKRLGQAGVSP 226
            +L  G  +E WH  GL +GN+ S   G  +L+V   +G  + +D GQ+V VW  D      P                           GW  ++ E   LL   P   LDL   W+         +   A A E +  +    +L         F SP   G + R   V+R AA Q+LA ER+ FKRV  +    +G +P
Sbjct:   54 LLCSGAAVELWHEGGLAVGNFRSRAEGSNALIVELSSGRSIKVDGGQLVDVWAADAGYPSTP--------------------------DGWTSLQAEAAGLLAELPPHMLDLRPLWQR-------LLTEKAAARERVDSSRVAQEL---------FTSPHRQGPSARQRLVQRLAAGQLLAAERTLFKRVPIELAQWSGDAP 213          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8570.16697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE5.000e-28482.64RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA2.600e-2026.63RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0M0LQR4_9EUKA6.380e-827.72Weakly cyanobacterial exoribonuclease (Fragment) n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 488..546

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8570contigE_fasciculatus_S2_contig8570:604..4549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8570.16697.1mRNA_E_fasciculatus_S2_contig8570.16697.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8570 604..4549 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8570.16697.1 ID=prot_E_fasciculatus_S2_contig8570.16697.1|Name=mRNA_E_fasciculatus_S2_contig8570.16697.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=547bp
MTAENGQSSSSGKGANSNQLRLLPGTVVLQPGDPIEFWHAQGLVLGNYES
PVPGRQSLVVRTEAGEPLTIDAGQIVGVWREDEMTGRLPLGSVTGAGGAD
GDESGGGGSSSASVVAGWVEVREETRALLQGTPARGLDLGAFWRAASSRG
KGFVVTPAHAAEFLFGAESPAKLGLRKRPPFRFRSPGETFRPSAVERAAA
AQVLAGERSRFKRVVSKRLGQAGVSPGGGSGRRKKKAKGGGTGVGAEGEV
LPADVGDGAVGIREEGGREGTVDAQGRSERKIEEEEEEEEEEELREPVLI
SVGGFKAMDQSVAVTREVADFCRVVGEVKRAAAAAAEGVAAGYGDAAAAE
EGGAGSALARAGLFEPAFLLILHSLEAFAIGGDEQSLIPEAKRVMVEITG
KANPTAAKSILVDVGLWTSRRQREEEEGGRPGEEGGEAGRDEAGEEGGVI
PWSAEALAAAAALGGERARRGANYGKRRPLEEVGAPAPFGRHIMNEKHRH
DFRGASFGVYCIDGAGTSFLDDAFSVDPETREVFIHITDVQGMVPTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold