prot_E_fasciculatus_S2_contig849.16618.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16618.1
Unique Nameprot_E_fasciculatus_S2_contig849.16618.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length79
Homology
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.510e-38
Identity = 72/79 (91.14%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 79
            MHPEIRAFPSARFY GRLTDAPCVRDQAAIPA SPSSETT   ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct:  484 MHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETT---ALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 559          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A6H5J8A4_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.660e-34
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0
Query:    5 IRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREAS 79
            + A  SARFY GRLTDAPCVRDQAAIPAPSPSSE TG  ALP LGPCFPPFLLVDVSSGSERRAG+SYQNPREAS
Sbjct:    9 VPAGSSARFYNGRLTDAPCVRDQAAIPAPSPSSEATGPLALPPLGPCFPPFLLVDVSSGSERRAGSSYQNPREAS 83          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A7S3XLJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLJ6_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 1.020e-9
Identity = 34/80 (42.50%), Postives = 40/80 (50.00%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPS--PSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 78
            MHP +RAFPS RFY G+L DAP +     +  PS  PS              CF PFL  D++   E R G S QN  EA
Sbjct:   51 MHPAVRAFPSKRFYNGQLADAPALASLGPLGIPSDWPSFHRHR---------CFAPFLFYDLTGSQEERIGTSVQNSAEA 121          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A2P6VM64_9CHLO (Helicase sen1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VM64_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 4.420e-7
Identity = 34/81 (41.98%), Postives = 39/81 (48.15%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLG-PCFPPFLLVDVSSGSERR--AGNSYQNPREA 78
            MHP IR FPSA FYQGRL DA  ++D                P  P  G P   P++  DVS G E+R   G S  N  EA
Sbjct:  784 MHPAIRQFPSAHFYQGRLRDADSIQDM---------------PPAPFYGHPLMKPYVFFDVSKGQEQRREGGGSLSNRAEA 849          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A835WJ40_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WJ40_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 8.170e-7
Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQN 74
            MHPEIRAFPSA FY+GRL D   V   AA P P  +++               P+++ DV+ G E+ AG S  N
Sbjct:  861 MHPEIRAFPSAFFYKGRLQDGESVLAAAARPPPFYAADL------------LKPYVVYDVAGGREQLAGRSRAN 922          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A835TBP1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBP1_CHLIN)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-6
Identity = 32/78 (41.03%), Postives = 41/78 (52.56%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAGNSYQNPREA 78
            MHPEIRAFPSA FY+GRL D   V   AA P    +++               P+++ DV+ G E+ AG S  N  EA
Sbjct:  836 MHPEIRAFPSAYFYKGRLQDGESVLAAAARPPAFYAADL------------LKPYVVYDVAGGREQLAGRSRANEAEA 901          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A7S0KWM0_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KWM0_MICPS)

HSP 1 Score: 53.9 bits (128), Expect = 1.300e-6
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQ--AAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAG 69
            MHP+I AFPSARFY G + DA  V+++  A +   +P +E   SP           FL VDV+SG E RAG
Sbjct:   40 MHPDISAFPSARFYAGAVRDADAVKNRRLARLFPMAPPNEWIRSP-----------FLFVDVASGREERAG 99          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: C1MVZ9_MICPC (Superfamily I helicase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVZ9_MICPC)

HSP 1 Score: 51.6 bits (122), Expect = 9.900e-6
Identity = 33/79 (41.77%), Postives = 40/79 (50.63%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAG-NSYQNPREA 78
            MHPEIRAFPS  FY+GRL      RD  ++ A  P S     P  P        ++L D S G E+R+   S  NP EA
Sbjct:  863 MHPEIRAFPSRAFYEGRL------RDSESVIAAPPESYHASWPLRP--------YVLFDASQGKEKRSTVGSVSNPYEA 927          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A7S0IFZ6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IFZ6_MICPS)

HSP 1 Score: 51.6 bits (122), Expect = 9.900e-6
Identity = 31/72 (43.06%), Postives = 37/72 (51.39%), Query Frame = 0
Query:    1 MHPEIRAFPSARFYQGRLTDAPCVRDQAA---IPAPSPSSETTGSPALPSLGPCFPPFLLVDVSSGSERRAG 69
            MHP+I AFPSARFY G + DA  VR +      P  +P+                 PFL VDV+SG E RAG
Sbjct:  887 MHPDISAFPSARFYAGAVRDADVVRRRRLARLFPMAAPNEWLRS------------PFLFVDVASGREERAG 946          
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Match: A0A835ZGC2_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.610e-5
Identity = 31/78 (39.74%), Postives = 40/78 (51.28%), Query Frame = 0
Query:    2 HPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGPCFPPFLLVDVSS-GSERRAGNSYQNPREA 78
            HP IRAFPSARFY GRL+DA  +  +AA P  +               P   P ++ D+   G+E + G S QN  EA
Sbjct:  178 HPAIRAFPSARFYGGRLSDAAAIATRAAPPHAA--------------DPALAPLVVYDLGRHGAEEQHGVSLQNSDEA 241          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16618.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LLI3_ECTSI2.510e-3891.14Presumed helicase required for RNA polymerase II t... [more]
A0A6H5J8A4_9PHAE4.660e-3486.67AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3XLJ6_HETAK1.020e-942.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P6VM64_9CHLO4.420e-741.98Helicase sen1 n=1 Tax=Micractinium conductrix TaxI... [more]
A0A835WJ40_9CHLO8.170e-741.89Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835TBP1_CHLIN1.120e-641.03Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7S0KWM0_MICPS1.300e-645.07Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1MVZ9_MICPC9.900e-641.77Superfamily I helicase n=1 Tax=Micromonas pusilla ... [more]
A0A7S0IFZ6_MICPS9.900e-643.06Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A835ZGC2_9STRA1.610e-539.74AAA domain-containing protein n=1 Tax=Tribonema mi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041679DNA2/NAM7 helicase-like, AAA domainPFAMPF13087AAA_12coord: 1..78
e-value: 1.5E-7
score: 31.2
NoneNo IPR availableGENE3D3.40.50.300coord: 1..79
e-value: 7.5E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR10887DNA2/NAM7 HELICASE FAMILYcoord: 1..78
NoneNo IPR availablePANTHERPTHR10887:SF463coord: 1..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:19873..21081 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16618.1mRNA_E_fasciculatus_S2_contig849.16618.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig849 19873..21091 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig849.16618.1 ID=prot_E_fasciculatus_S2_contig849.16618.1|Name=mRNA_E_fasciculatus_S2_contig849.16618.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=79bp
MHPEIRAFPSARFYQGRLTDAPCVRDQAAIPAPSPSSETTGSPALPSLGP
CFPPFLLVDVSSGSERRAGNSYQNPREAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041679DNA2/NAM7-like_AAA