prot_E_fasciculatus_S2_contig849.16616.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig849.16616.1
Unique Nameprot_E_fasciculatus_S2_contig849.16616.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length222
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs. uniprot
Match: A0A6H5J8A4_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A4_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 7.000e-61
Identity = 142/219 (64.84%), Postives = 147/219 (67.12%), Query Frame = 0 
Query:    1 EARPS---EGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKXXXXXXXXXXQKRARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXXAPRLGGARVTELSRPVERKQAPPARHSPRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDARNGGRAVGASSASTGDTRRAAPSTERRDGSS 216
            E RPS   E   RDRPPVEK QQRHEEAGGAKPTP+GSA K          QKRARV GQEAAK+VSTP+ GFLGGLL+SLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXX APRLGGARVTELSRPVER+QAP ARHS R A                                        RTDARNGGR VG SSAST D RR APST RRD SS
Sbjct:  404 EVRPSARLEESMRDRPPVEKHQQRHEEAGGAKPTPRGSACKRPDGGAANRPQKRARVYGQEAAKRVSTPDSGFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXAAPRLGGARVTELSRPVEREQAPSARHSSRAAAAADATGRQTPVERDDRGGRGSHRGVDSTEVVPPS----TRTDARNGGRVVGTSSASTVDARRVAPSTARRDASS 618
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BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.400e-59
Identity = 130/211 (61.61%), Postives = 137/211 (64.93%), Query Frame = 0 
Query:    6 EGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKXXXXXXXXXXQKRARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGGEDXXXXXXXXAPRLGGARVTELSRPVERKQAPPARHSPRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTDARNGGRAVGASSASTGDTRRAAPSTERRDGSS 216
            EG  RDRPPV+KRQQRHEEAGGAKPTP+GSA +          QKRAR  GQ AAK+VSTP+GGFLGGLL+SLSSNAGGIASGKEHDFRQGLRGGED        APRLGGARVTELSRPVE KQAPPARHS R A                                         TDARNGGRAVG SSAST + RR APST RRD SS
Sbjct:  888 EGSVRDRPPVDKRQQRHEEAGGAKPTPRGSACRRPDGGAANRPQKRARADGQGAAKRVSTPDGGFLGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDEERRRVAAAPRLGGARVTELSRPVEPKQAPPARHSSRAAAAATGRQTPVESDDRGGRGSHRGGGFTGVVPPSTP------TDARNGGRAVGTSSASTVNARRVAPSTARRDASS 1092
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig849.16616.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8A4_9PHAE7.000e-6164.84AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LLI3_ECTSI2.400e-5961.61Presumed helicase required for RNA polymerase II t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig849contigE_fasciculatus_S2_contig849:17078..18473 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig849.16616.1mRNA_E_fasciculatus_S2_contig849.16616.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig849 17076..18473 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig849.16616.1 ID=prot_E_fasciculatus_S2_contig849.16616.1|Name=mRNA_E_fasciculatus_S2_contig849.16616.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=222bp
EARPSEGRARDRPPVEKRQQRHEEAGGAKPTPQGSASKRPDGAVANRPQK
RARVTGQEAAKKVSTPNGGFLGGLLNSLSSNAGGIASGKEHDFRQGLRGG
EDDERRRAAAAPRLGGARVTELSRPVERKQAPPARHSPRTAAAAAGAAVV
AGRQTLAESDDRGGRRSHGGGGSAGVVPSSARTDARNGGRAVGASSASTG
DTRRAAPSTERRDGSSSARGFD
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