prot_E_fasciculatus_S2_contig824.16388.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig824.16388.1
Unique Nameprot_E_fasciculatus_S2_contig824.16388.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length134
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig824.16388.1 vs. uniprot
Match: D7FM61_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 7.140e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:    1 MSMWRGSTADVILQGDHRLDLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS 56
            MSMWRGSTAD ILQGDHR+DLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS
Sbjct:    1 MSMWRGSTADAILQGDHRIDLRDRSLSTQDVTALAKLLSTSSQVSALILYNVRLNS 56
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM61_ECTSI7.140e-2496.43Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 16..134
e-value: 3.3E-21
score: 77.6
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 19..134
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 19..134
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 18..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig824contigE_fasciculatus_S2_contig824:22107..24010 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig824.16388.1mRNA_E_fasciculatus_S2_contig824.16388.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig824 22104..24010 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig824.16388.1 ID=prot_E_fasciculatus_S2_contig824.16388.1|Name=mRNA_E_fasciculatus_S2_contig824.16388.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
MSMWRGSTADVILQGDHRLDLRDRSLSTQDVTALAKLLSTSSQVSALILY
NVRLNSDDAVLLARALEFNDTLATLNFTHNPIGEVGTAALAQVIKFNTTI
REVSLANTVLNSQACALLSDALIMNRTLESLNLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf