prot_E_fasciculatus_S2_contig821.16366.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig821.16366.1
Unique Nameprot_E_fasciculatus_S2_contig821.16366.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length466
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig821.16366.1 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 1.030e-131
Identity = 232/275 (84.36%), Postives = 237/275 (86.18%), Query Frame = 0 
Query:    1 MDYWHVDDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFAAGAAGTIGPPTXXXXXXXXAGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLMRMLLTVGG-AGAEGXXXXXXXXDGEPRQQGAAAVGVGRNGLNGGEAATGAXXXXXXXXXXXXXXXXATGAPAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 274
            MD WH DDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGF  GAAGTIGPPT         GSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQL+RMLLTVGG AGA G          EP+Q GAAAVGV + G NGG AA  A    XXXXXXXXXXXX  GAPAGPLLVHIRGSKEFL+YFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIP+FLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MDNWHADDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAAGTIGPPTTEGGGSGGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLVRMLLTVGGGAGAAG----------EPQQLGAAAVGVVK-GSNGGGAA--AEVGTXXXXXXXXXXXXXXGAPAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 262
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BLAST of mRNA_E_fasciculatus_S2_contig821.16366.1 vs. uniprot
Match: D8LEE5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.800e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:  212 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 274
            MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 63
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BLAST of mRNA_E_fasciculatus_S2_contig821.16366.1 vs. uniprot
Match: A0A836CHX9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.780e-12
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:  179 APAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSN 251
            A   PL  HIRG  EF+++FRA E   AW   R+  +SI+LDY DS+ GPIP F+G    V ++ WLDLGRS+
Sbjct:   25 AAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQ---VKSLVWLDLGRSD 94
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig821.16366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KR97_9PHAE1.030e-13184.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEE5_ECTSI2.800e-31100.00Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CHX9_9STRA4.780e-1250.68Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 311..334
e-value: 76.0
score: 6.1
coord: 335..359
e-value: 16.0
score: 11.6
coord: 263..287
e-value: 37.0
score: 8.6
coord: 383..407
e-value: 2.5
score: 17.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 289..348
e-value: 1.7E-9
score: 37.3
coord: 363..420
e-value: 1.6E-7
score: 31.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 353..455
e-value: 4.8E-29
score: 103.0
coord: 234..352
e-value: 4.8E-36
score: 125.8
NoneNo IPR availablePANTHERPTHR27006:SF142coord: 209..310
coord: 278..362
coord: 301..389
NoneNo IPR availablePANTHERPTHR27006FAMILY NOT NAMEDcoord: 209..310
NoneNo IPR availablePANTHERPTHR27006FAMILY NOT NAMEDcoord: 369..448
coord: 278..362
coord: 301..389
NoneNo IPR availablePANTHERPTHR27006:SF142coord: 369..448
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 239..447

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig821contigE_fasciculatus_S2_contig821:6834..15001 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig821.16366.1mRNA_E_fasciculatus_S2_contig821.16366.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig821 6635..15001 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig821.16366.1 ID=prot_E_fasciculatus_S2_contig821.16366.1|Name=mRNA_E_fasciculatus_S2_contig821.16366.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=466bp
MDYWHVDDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFAAGAAG
TIGPPTTGGGSSGGAGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVF
KMGASCRQLMRMLLTVGGAGAEGGAGAAAAADGEPRQQGAAAVGVGRNGL
NGGEAATGAGAGGAAAAAAGVVAAAATGAPAGPLLVHIRGSKEFLSYFRA
LEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRS
NLTGSIPENLGTLPNLRKLYLAGNQLVGPIPSSLGDIATLSDLSLAGNEL
SGAIPDSFGNLTLLRYLSLRDNKLSGAIPESLGNLVNLEELWLNANQIEG
AIPASLGNMATARKVFLNNNSIEGTLPATLGNLSSLRILSLRHNRLTGTI
PPELGRLSQLKTLYMEKNELEGNIPDTLANLASLKELNLLGNKFQGKAQT
RNLLIGRLPNCVVYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp