prot_E_fasciculatus_S2_contig8202.16359.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8202.16359.1
Unique Nameprot_E_fasciculatus_S2_contig8202.16359.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length60
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: D7G8W9_ECTSI (CPSF_A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.140e-29
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0
Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR
Sbjct:  139 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 192          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A7S1BI36_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BI36_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.750e-11
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    5 DGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPRFVWRI 59
            D  R+ +  GT+DGG GAV PV+ER FRRLYALQG++ NAL  +GA N R  WR+
Sbjct:  427 DCRRFGVHFGTVDGGFGAVFPVNERTFRRLYALQGVVGNALQQSGALNVR-GWRL 480          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: K8YVP3_NANGC (Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YVP3_NANGC)

HSP 1 Score: 63.2 bits (152), Expect = 3.640e-10
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR
Sbjct:  280 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 332          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A4D9CM95_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM95_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.810e-10
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    1 GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            G  R G R  ++ G+++GG+GA++PV+E+V+RRLYALQ +M NAL H GA NPR
Sbjct: 1836 GAYRAGVRV-MVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPR 1888          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A7S2D6V7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6V7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.510e-10
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0
Query:    8 RYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            R+     +LDG  GAV+PVDE  FRRLYALQGI+ NAL H  A NPR
Sbjct:  116 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 162          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A7S2FC30_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC30_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-9
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0
Query:   14 GTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            G+LDG  G ++P DER F+RLYALQGI+ NAL H  A NPR
Sbjct:   15 GSLDGSAGVIVPTDERPFKRLYALQGILINALPHVAALNPR 55          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A7S2D575_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D575_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0
Query:    8 RYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            R+     +LDG  GAV+PVDE  FRRLYALQGI+ NAL H  A NPR
Sbjct:  350 RFASWFASLDGAAGAVVPVDEHSFRRLYALQGILVNALPHTAALNPR 396          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A6G0WGC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.680e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0
Query:    9 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            Y  L  T +GGLG ++PV ER+FRRLY LQ IM NAL  N   NPR
Sbjct: 1372 YVTLLATAEGGLGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1417          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A397FV89_9STRA (CPSF_A domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FV89_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-8
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0
Query:    9 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            Y  L  T +GGLG ++PV ER+FRR+Y LQ IM N L  N   NPR
Sbjct:   51 YVTLLATAEGGLGVLIPVQERLFRRMYTLQSIMINVLPQNAGLNPR 96          
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Match: A0A485L0M5_9STRA (Aste57867_14310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0M5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.620e-8
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0
Query:    9 YCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGAANPR 54
            Y  L  T +GG+G ++PV ER+FRRLY LQ IM NAL  N   NPR
Sbjct: 1367 YVTLLATAEGGIGVLIPVQERLFRRLYTLQSIMINALPQNAGLNPR 1412          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8202.16359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W9_ECTSI1.140e-29100.00CPSF_A domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1BI36_9STRA5.750e-1158.18Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
K8YVP3_NANGC3.640e-1055.56Cleavage and polyadenylation specificity factor su... [more]
A0A4D9CM95_9STRA3.810e-1055.56Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2D6V7_9STRA8.510e-1061.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FC30_9STRA1.600e-963.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D575_9STRA1.780e-961.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0WGC0_9STRA8.680e-958.70Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397FV89_9STRA1.560e-854.35CPSF_A domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A485L0M5_9STRA1.620e-856.52Aste57867_14310 protein n=1 Tax=Aphanomyces stella... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 8..54
e-value: 2.2E-6
score: 27.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8202contigE_fasciculatus_S2_contig8202:679..858 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8202.16359.1mRNA_E_fasciculatus_S2_contig8202.16359.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8202 679..858 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8202.16359.1 ID=prot_E_fasciculatus_S2_contig8202.16359.1|Name=mRNA_E_fasciculatus_S2_contig8202.16359.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
GNLRDGARYCLLAGTLDGGLGAVLPVDERVFRRLYALQGIMSNALGHNGA
ANPRFVWRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C