prot_E_fasciculatus_S2_contig80.16159.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig80.16159.1
Unique Name	prot_E_fasciculatus_S2_contig80.16159.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	94

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 5.850e-57
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
            MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.050e-55
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
            MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.810e-48
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
            MSA+IEQRNQDATCY GNLD + TE LLWELMIQAGPV NVHMPKDK+T  HQG+GFVEFRSE+DAEYAIKI+NMVKLFGKPLRVNKAS DRKA
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEAATEELLWELMIQAGPVVNVHMPKDKVTNTHQGYGFVEFRSEEDAEYAIKILNMVKLFGKPLRVNKASSDRKA 94

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A7S3ZVH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVH1_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.080e-47
Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = 0

Query:    5 IEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
            +EQRNQDATCY GNLD  +TE LLWE+M+QAGPV+NVH+P+DK+TG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQDR+A
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPVSNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDRRA 95

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A7S2SH37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH37_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.800e-47
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 93
            MSA+IEQRNQDATCY GNLD  V E LLWELM+QAGPV ++HMPKDK+T  HQGFGFVEFRSE+DA+YAIKIMNMVKLF KP+RVNKASQDRK
Sbjct:    1 MSAAIEQRNQDATCYCGNLDDQVEEELLWELMLQAGPVVSLHMPKDKVTNSHQGFGFVEFRSEEDADYAIKIMNMVKLFDKPIRVNKASQDRK 93

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: F0YAQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 158 bits (400), Expect = 1.330e-45
Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 0

Query:    5 IEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 93
            +EQRNQDATCY GNLD  +TE LLWE+M+QAGP+ NVH+P+DK+TG HQG+GFVEFRSE+DA+YA+K+MNMVKLFGKPLRVNKASQD+K
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKK 94

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A7S2APL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APL4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.410e-43
Identity = 74/93 (79.57%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 93
            MSA+IEQRNQDATCY GNLD  V E LLWELM+QAGPV ++HMPKDK+T  HQG+GFVEFRSE+DA+YAIK+MNMVKLFGKP+RVNKASQD+K
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEQVDEELLWELMLQAGPVVSLHMPKDKVTASHQGYGFVEFRSEEDADYAIKVMNMVKLFGKPIRVNKASQDKK 93

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A7S1XM10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM10_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.170e-43
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 0

Query:    2 SASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA 94
            SA++E RNQDATCY GNLD  VTE +LWELM+QAGP+ +++MPKDK++G HQG+GFVEFR  DDA+YA K+MNMVK++GKP+RVNKASQDRK+
Sbjct:    3 SANLEHRNQDATCYCGNLDEKVTEEILWELMLQAGPIQSIYMPKDKVSGNHQGYGFVEFRGTDDADYAHKVMNMVKVYGKPIRVNKASQDRKS 95

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: A0A7S3MGC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGC9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.950e-42
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 0

Query:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 93
            MSA+IEQRNQ+ATCY GNLD  V E LLWE M+Q GPV NV MPKDK++G + G+GFVE+RSEDDA+YAIK++NMVKL+ KP++VNKASQD+K
Sbjct:    1 MSAAIEQRNQEATCYVGNLDEKVNEELLWEFMLQVGPVVNVFMPKDKVSGKYLGYGFVEYRSEDDADYAIKVLNMVKLYFKPVKVNKASQDKK 93

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BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Match: K8YVH7_NANGC (Splicing factor 3B subunit 4 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVH7_NANGC)

HSP 1 Score: 147 bits (370), Expect = 6.540e-42
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0

Query:    2 SASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRK 93
            S +IEQRNQDAT Y G LD  VTE LLWELM   GPV +VHMP+DK+TG+HQ FGFVEFRSE+DA+YA+KIMNMV+++GKPLRVNKASQDRK
Sbjct:    3 SGAIEQRNQDATVYCGGLDEKVTEDLLWELMQNVGPVVHVHMPRDKVTGMHQCFGFVEFRSEEDADYAVKIMNMVRMYGKPLRVNKASQDRK 94

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig80.16159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KI11_9PHAE	5.850e-57	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LT41_ECTSI	1.050e-55	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YPU5_9STRA	2.810e-48	85.11	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3ZVH1_9STRA	4.080e-47	78.89	Hypothetical protein (Fragment) n=1 Tax=Pelagomona...	[more]
A0A7S2SH37_9STRA	4.800e-47	81.72	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
F0YAQ8_AURAN	1.330e-45	77.53	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S2APL4_9STRA	1.410e-43	79.57	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S1XM10_9STRA	2.170e-43	70.97	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A7S3MGC9_9STRA	1.950e-42	70.97	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
K8YVH7_NANGC	6.540e-42	75.00	Splicing factor 3B subunit 4 n=1 Tax=Nannochlorops...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 13..86 e-value: 8.6E-22 score: 88.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..84 e-value: 5.5E-17 score: 61.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 12..90 score: 16.33
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..94 e-value: 3.5E-27 score: 96.4
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 8..90
None	No IPR available	PANTHER	PTHR13798:SF11		coord: 8..90
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig80	contig	E_fasciculatus_S2_contig80:2870..5788 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig80.16159.1	mRNA_E_fasciculatus_S2_contig80.16159.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig80 2870..5788 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig80.16159.1 ID=prot_E_fasciculatus_S2_contig80.16159.1|Name=mRNA_E_fasciculatus_S2_contig80.16159.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITG
VHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom