prot_E_fasciculatus_S2_contig795.16108.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig795.16108.1
Unique Nameprot_E_fasciculatus_S2_contig795.16108.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length833
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig795.16108.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 1189 bits (3076), Expect = 0.000e+0
Identity = 671/851 (78.85%), Postives = 687/851 (80.73%), Query Frame = 0 
Query:    1 MQHSTPVSDMDVSGAEQDVGSIFASSSGKRDAAAGAAELGYQGWAARHLVLAFHRIFVEQSERAQSGDTEDLVSESLEHRGVIFWCLTNINS--DVVSAAATEADRRDEDVFHDGLTDFYHVWTLAEAFLLDSVPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPSPAYWDALRSLVVGVAPRRAADLLRSHPEGRDNASEVGALARQLEKMPLLLPEGGGAGAGEEDAGGG-AEAHLDREGFFETWTRWQKGCKAAAGRFGVVVGVGGDRGGADVGPERRQLRWLWGALCGERDCLSEATNSWSSFFAAVLAYERPDTRKEEVASVMRECTREYSEHQEETFLTKVIRDASAGAVDSILKFAREHGDTLALSVCATHLVDVLSRAKLTAVTNQQRSWFFRRLADRLRASPCGGWELAATYLSGXXXXXXXXEA--EAQLLRELVLGVVPESERAAHELVEWCRVRGLGEEAEAAVCRARGATWIGKTGLSAVAMGTXXXXXXXXXXXXXXXXX-ACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVSSGVGSAADVQ-AQQVVLAEADGVLAAVPPGVNGPELSFLRLYKKIADHLYDEAA-QPQPPHAS---DSSPAAAGRGSRRAGALAVAMLAPRAAEAAEGXAPGEAPSSPTPPPRTWAHLLRLSVPALKATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNLSRGGGSCGGGTLATAPAPYGF---GGSGVAEVSEIRRALAGCLGAAMMAQNAAEAAPEAVG-----GGGGDFALLGTRRLPAEALIDPRVAV 832
            MQH+TPVSDMDVSGAEQD+GSI A+SS K DAAAGAAELGYQGWAARHLVLAFHRIF EQSERAQ GDT DLVSESLEHRGVIFWCLT+INS  DV SAA TEADRRDEDVFHDGLTDFYHVWTLAEAFLLDS+PLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADP+PAYWDALRSLVVGVAPRRAA+LLRSHPEGRDNASEVGALARQLE MPLLL EG              AEAHLDREGFFETWTRWQKGCKAAAGRFGVVVGVG DRGG DVGPERRQLRWLWG LCGER CL EATN+WS FFAAVLAYERPDTRKEEVASVMRECTR YSEHQEE FLTKVIRDASAGAVDSILKFAR+HGDTLALSVCATHLVDVLSRAK TAVT+QQRSWFFRRLADRLRASPCG WELAATYLSG        +   EA LLREL LGVVPESERA HELVEWCR RGLGEE EAAVCRARGA WI KTGLSAVAMGT                  ACGKAAYWLAKGGGWVQLERLCAEVSERLMVEV SGVGSAADVQ AQQVVLAEADGVLAAVPPGVNGPELSFL  YK+IAD L  EAA QP PPHAS    SSPAA G G+R AGALAV MLAPR      G   G+AP                      A AGA                             AGVTVAQVHALLAKLQALVASEHRVGSVRGVWN SRGG  CGGGTLATAPAPYGF   GGSGV +VSEIRRALAGCLGAAMMAQNAAEAAPEAVG     GG GDF LLGTRRLPAEAL+DPRVAV
Sbjct:    1 MQHATPVSDMDVSGAEQDIGSIIANSSSKGDAAAGAAELGYQGWAARHLVLAFHRIFAEQSERAQWGDTGDLVSESLEHRGVIFWCLTHINSNSDVASAAPTEADRRDEDVFHDGLTDFYHVWTLAEAFLLDSIPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPNPAYWDALRSLVVGVAPRRAAELLRSHPEGRDNASEVGALARQLENMPLLLREGXXXXXXXXXXXXXXAEAHLDREGFFETWTRWQKGCKAAAGRFGVVVGVGDDRGGGDVGPERRQLRWLWGVLCGERGCLVEATNTWSGFFAAVLAYERPDTRKEEVASVMRECTRVYSEHQEEAFLTKVIRDASAGAVDSILKFARDHGDTLALSVCATHLVDVLSRAKFTAVTHQQRSWFFRRLADRLRASPCGFWELAATYLSGGSSRDGGDDEDDEAGLLRELALGVVPESERATHELVEWCRARGLGEEVEAAVCRARGAAWIAKTGLSAVAMGTAVAAAEGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPR------GSCDGDAPV---------------------AGAGADEGEEAS----------------------AGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSGVEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALVDPRVAV 802
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig795.16108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI0.000e+078.85Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 333..353
IPR011502Nucleoporin Nup85-likePFAMPF07575Nucleopor_Nup85coord: 47..492
e-value: 2.7E-24
score: 85.7
IPR011502Nucleoporin Nup85-likePANTHERPTHR13373FROUNT PROTEIN-RELATEDcoord: 62..498

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig795contigE_fasciculatus_S2_contig795:18212..21954 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig795.16108.1mRNA_E_fasciculatus_S2_contig795.16108.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig795 18212..21954 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig795.16108.1 ID=prot_E_fasciculatus_S2_contig795.16108.1|Name=mRNA_E_fasciculatus_S2_contig795.16108.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=833bp
MQHSTPVSDMDVSGAEQDVGSIFASSSGKRDAAAGAAELGYQGWAARHLV
LAFHRIFVEQSERAQSGDTEDLVSESLEHRGVIFWCLTNINSDVVSAAAT
EADRRDEDVFHDGLTDFYHVWTLAEAFLLDSVPLPAAPLLRWLKMYSLSG
EDEAARSELDETERVALEADAAGGSADPSPAYWDALRSLVVGVAPRRAAD
LLRSHPEGRDNASEVGALARQLEKMPLLLPEGGGAGAGEEDAGGGAEAHL
DREGFFETWTRWQKGCKAAAGRFGVVVGVGGDRGGADVGPERRQLRWLWG
ALCGERDCLSEATNSWSSFFAAVLAYERPDTRKEEVASVMRECTREYSEH
QEETFLTKVIRDASAGAVDSILKFAREHGDTLALSVCATHLVDVLSRAKL
TAVTNQQRSWFFRRLADRLRASPCGGWELAATYLSGGGGGGDDDEAEAQL
LRELVLGVVPESERAAHELVEWCRVRGLGEEAEAAVCRARGATWIGKTGL
SAVAMGTAAAGAEGAETSGARVEGACGKAAYWLAKGGGWVQLERLCAEVS
ERLMVEVSSGVGSAADVQAQQVVLAEADGVLAAVPPGVNGPELSFLRLYK
KIADHLYDEAAQPQPPHASDSSPAAAGRGSRRAGALAVAMLAPRAAEAAE
GAAPGEAPSSPTPPPRTWAHLLRLSVPALKATAGAAAAAAAAAAAAAAAE
GGAAAGAGEGGAAAAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNLSR
GGGSCGGGTLATAPAPYGFGGSGVAEVSEIRRALAGCLGAAMMAQNAAEA
APEAVGGGGGDFALLGTRRLPAEALIDPRVAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011502Nucleoporin_Nup85