prot_E_fasciculatus_S2_contig7913.16080.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig7913.16080.1
Unique Nameprot_E_fasciculatus_S2_contig7913.16080.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length231
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.690e-79
Identity = 187/217 (86.18%), Postives = 190/217 (87.56%), Query Frame = 0 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTLSRMGSLSVDTADLGGGGSXXXX-RSAMPNAMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHXGNAGGGGHHXXXXXXXXXXXXXXXXXXMXXGMGYDEKPRAEGYSSRGMG 216
            MNGLR+TV PGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEE VMVSFLQKVIVPDRPFEPTIDL L+RMGSLSVDTADLGGG  XXXX RS+MPNAMM        XXXXXXXXXXXXXXXXXXXXXXXXX  X         XXXXXXXXXXXXXXXXXX XX MGYDEKPRAEGYSSRGMG
Sbjct:    1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGSLSVDTADLGGGXXXXXXXRSSMPNAMMHDHMDDGMXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXMGYDEKPRAEGYSSRGMG 208
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 3.580e-79
Identity = 196/216 (90.74%), Postives = 198/216 (91.67%), Query Frame = 0 
Query:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTLSRMGSLSVDTADLGGGGSXXXX-RSAMPNAMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHXGNAGGGGHHXXXXXXXXXXXXXXXXXXMXXGMGYDEKPRAEGYSSRGM 215
            MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDL LSRMGSLSVDTADLGGGG XXXX R+AMPNA+MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X         XXXXXXXXXXXXXXXX  M  GMGYDEKPRAEGYSSRGM
Sbjct:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGSLSVDTADLGGGGGXXXXXRNAMPNAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXSAMGGGMGYDEKPRAEGYSSRGM 207
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 7.760e-17
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0 
Query:   12 PYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRP-----FEPT 95
            PYFPFHRDE YP+   V+F++L+  TL+ Y   H INVRPD ++ ELA+AAA HF+   +V+E   + SFL K  + D P      EPT
Sbjct:   21 PYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNKCGINDIPTGLPLLEPT 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7913.16080.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5U0_9PHAE1.690e-7986.18SAP30_Sin3_bdg domain-containing protein (Fragment... [more]
D7FGV9_ECTSI3.580e-7990.74SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S4DFH4_HETAK7.760e-1748.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D1.10.720.110coord: 17..91
e-value: 2.2E-9
score: 39.0
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 33..85
e-value: 1.7E-15
score: 57.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7913contigE_fasciculatus_S2_contig7913:4391..7114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7913.16080.1mRNA_E_fasciculatus_S2_contig7913.16080.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig7913 4391..7114 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig7913.16080.1 ID=prot_E_fasciculatus_S2_contig7913.16080.1|Name=mRNA_E_fasciculatus_S2_contig7913.16080.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVR
PDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLTL
SRMGSLSVDTADLGGGGSGGGGRSAMPNAMMHDHMNDAMNDDMLDGMGGD
MGGGGGGSGGRGGGVHGGNAGGGGHHGGGGGGGYGRHGGGHASAMGGGMG
YDEKPRAEGYSSRGMGGGGREGGGGGGGGRG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025718SAP30_Sin3-bd
IPR038291SAP30_C_sf