prot_E_fasciculatus_S2_contig6836.14960.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig6836.14960.1
Unique Name	prot_E_fasciculatus_S2_contig6836.14960.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	366

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6836.14960.1 vs. uniprot
Match: D8LFZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ4_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 1.270e-162
Identity = 288/361 (79.78%), Postives = 295/361 (81.72%), Query Frame = 0

Query:    7 AADLSSRVSSREDVEDLQAWLDGDHALDDTAAQGGDAAAAAGDTAEQAPVDPCWRSNMLIQVLLRGGQASPTHTFVYLDRYRSYLRALRRDEALGEPNQVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDNNNAIALSPFLWEVMSKAISLYTDRVTHSLGELRDLEKSAKALDEAIDERLKNRSSSPAAPSADEGNDDDVPPAADPQDLEEKRRMSNDIEDQRDDVREAVQQASALCTATVSSFVQALANALPQYAANGMTDFSADPWWVSMTSYLKGSLSLFSALPGVPARYFTTATNDXXXXXXXXXXXERR--ILTASEVEKLASAAGCLEHVEAIVVDLKGMA 365
            AADLSSRVSSREDVEDLQ                                           VLLRGGQASPTHTFVYLDRYRSYLR LRRDEALGE NQVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDNNNAIALSPFLWEVMSKAISLYTDRVT SLGELRDLEKSAKALDEAIDERLKNRS     PS +EG DD+ PPA DPQD+EEK+RMSNDIEDQRD VREAVQQA ALCTATVSSFVQALANALPQYAANGMTDFSADPWWVSMTSYLKGSLSLFSALPGVPAR+FT AT  XXXXXXXXXXX     ILTA EVE+LA+AAGCLEHVEAIVVDLKGMA
Sbjct:  622 AADLSSRVSSREDVEDLQ-------------------------------------------VLLRGGQASPTHTFVYLDRYRSYLRTLRRDEALGEANQVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDNNNAIALSPFLWEVMSKAISLYTDRVTLSLGELRDLEKSAKALDEAIDERLKNRS---PVPSTEEG-DDNAPPA-DPQDVEEKQRMSNDIEDQRDVVREAVQQARALCTATVSSFVQALANALPQYAANGMTDFSADPWWVSMTSYLKGSLSLFSALPGVPARHFTAATEXXXXXXXXXXXXXXXXXILTAGEVEELATAAGCLEHVEAIVVDLKGMA 934

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BLAST of mRNA_E_fasciculatus_S2_contig6836.14960.1 vs. uniprot
Match: B4PQV0_DROYA (Nuclear cap-binding protein subunit 1 n=5 Tax=melanogaster subgroup TaxID=32351 RepID=B4PQV0_DROYA)

HSP 1 Score: 56.2 bits (134), Expect = 6.300e-5
Identity = 34/125 (27.20%), Postives = 65/125 (52.00%), Query Frame = 0

Query:   56 VDPCWRSNMLIQVLLRGGQASPTHTFVYLDRYRSYLRALRRDEALGEPN-QVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDNNNAIALSPFLWEVMSKAISLYTDRVTHSL 179
            + P  + N+  Q  L  G  S +HTF  L +Y S  +    D A G+P  Q+A+L+G+  +W  S Q+  +V + L+ + ++ P +VV ++F       +    ++WE++   +  +  RV H++
Sbjct:  547 IGPLLKINVFTQNCLHLGSKSFSHTFAILSKYHSVFK----DLAAGDPEKQLAILNGIFDVWVASDQYKFVVSEKLVKMEIIDPNSVVNWIFDPMMRQELT-KMYVWELLHSTVR-HQKRVQHAI 665

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6836.14960.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig6836.14960.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFZ4_ECTSI	1.270e-162	79.78	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
B4PQV0_DROYA	6.300e-5	27.20	Nuclear cap-binding protein subunit 1 n=5 Tax=mela...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	COILS	Coil	Coil	coord: 229..252
None	No IPR available	COILS	Coil	Coil	coord: 358..365
IPR015174	MIF4G-like, type 2	PFAM	PF09090	MIF4G_like_2	coord: 52..281 e-value: 7.8E-24 score: 84.6
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 1..204 e-value: 1.2E-23 score: 85.9
IPR027159	Nuclear cap-binding protein subunit 1	PANTHER	PTHR12412	CAP BINDING PROTEIN	coord: 6..297
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 6..297

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6836	contig	E_fasciculatus_S2_contig6836:4668..8065 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6836.14960.1	mRNA_E_fasciculatus_S2_contig6836.14960.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig6836 4668..8065 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig6836.14960.1 ID=prot_E_fasciculatus_S2_contig6836.14960.1|Name=mRNA_E_fasciculatus_S2_contig6836.14960.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=366bp
SSVAAAAADLSSRVSSREDVEDLQAWLDGDHALDDTAAQGGDAAAAAGDT
AEQAPVDPCWRSNMLIQVLLRGGQASPTHTFVYLDRYRSYLRALRRDEAL
GEPNQVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDN
NNAIALSPFLWEVMSKAISLYTDRVTHSLGELRDLEKSAKALDEAIDERL
KNRSSSPAAPSADEGNDDDVPPAADPQDLEEKRRMSNDIEDQRDDVREAV
QQASALCTATVSSFVQALANALPQYAANGMTDFSADPWWVSMTSYLKGSL
SLFSALPGVPARYFTTATNDDEGEEEVVVEDERRILTASEVEKLASAAGC
LEHVEAIVVDLKGMA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR027159	CBP80
IPR016021	MIF4-like_sf
IPR015174	MIF4G-like_typ-2