prot_E_fasciculatus_S2_contig676.14880.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig676.14880.1
Unique Nameprot_E_fasciculatus_S2_contig676.14880.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length276
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig676.14880.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 1.810e-114
Identity = 242/275 (88.00%), Postives = 242/275 (88.00%), Query Frame = 0 
Query:    1 MTYASLAKSWATVAADSGSXXXXXXXXXXXXXXXXXXXXXXXXXXTSNGGWGAPDPAVAAAGGAAGGAGLTIEQPVGQPAPGVGQHASRPSSATGKGQKGPGAYIPHHASPAVAASXXXXXXXXAAGNGEIMPATSLFVRKASCGGGVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAEA 275
            MTYASLAKSWATVAADSG XXXXXXXXXXXXXXXXXXXXXXXXXX                G  AGGA LTIEQPVGQP PGV QH SRPSSATGKGQKGPGAYIPHHASPAVAAS XXXX   AAGNGEIMPATSLFVRK      VDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAEA
Sbjct:  313 MTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXGAVAGGAVLTIEQPVGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRK------VDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAEA 580
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BLAST of mRNA_E_fasciculatus_S2_contig676.14880.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.520e-13
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 0 
Query:  135 TSLFVRKASCGGGVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEH 223
            T+LFVRK      +DM +DR+++I HFS +G+V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P   + SRG +
Sbjct:  319 TTLFVRK------IDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPK-SRGNN 400
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BLAST of mRNA_E_fasciculatus_S2_contig676.14880.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.520e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0 
Query:  135 TSLFVRKASCGGGVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRN 218
            T+LFVRK      +DM +DR+++I HFS++G+V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P   ++
Sbjct:  438 TTLFVRK------IDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEPATPKS 515
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig676.14880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJI2_ECTSI1.810e-11488.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSS4_ECTSI6.520e-1346.07Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE8.520e-1345.24RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 136..208
e-value: 7.7E-6
score: 35.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 147..196
e-value: 1.0E-5
score: 25.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 135..212
score: 10.121
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 130..246
e-value: 3.4E-11
score: 45.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..275
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 146..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig676contigE_fasciculatus_S2_contig676:25711..28991 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig676.14880.1mRNA_E_fasciculatus_S2_contig676.14880.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig676 25238..29123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig676.14880.1 ID=prot_E_fasciculatus_S2_contig676.14880.1|Name=mRNA_E_fasciculatus_S2_contig676.14880.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=276bp
MTYASLAKSWATVAADSGSGVAAAAAVVGAPASAASPSGNGNGIATSNGG
WGAPDPAVAAAGGAAGGAGLTIEQPVGQPAPGVGQHASRPSSATGKGQKG
PGAYIPHHASPAVAASAAAAREAAAAGNGEIMPATSLFVRKASCGGGVDM
TIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYV
NRKLLVVEERHSPMVQRNSRGEHGGGRGGRNGGRGRVSSGRDGRDGDRRP
TGRGGRDRPDGPKDGGYRARGRAEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom