mRNA_E_fasciculatus_S2_contig9979.17962.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9979.17962.1
Unique NamemRNA_E_fasciculatus_S2_contig9979.17962.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.990e-35
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 2
Query:    2 EDLVFESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            EDLVFE L SLHAVVFS+AQARESLNILQDL+P+F   YDP+A FVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ
Sbjct:  754 EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 830          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.890e-34
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 2
Query:    2 EDLVFESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            EDLVFE L SLHAVVFSFAQARESLNILQDL+P+F   YDP+A FVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQ
Sbjct:  845 EDLVFEPLPSLHAVVFSFAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQ 921          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 63.2 bits (152), Expect = 7.660e-10
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            H V+ ++AQA+    +L DLQP     YDP+  F+R LE Y A    D  PL VYFM+Y++S E+Q
Sbjct:  499 HLVICTYAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 61.6 bits (148), Expect = 2.680e-9
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 2
Query:   44 VFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            ++ +A  R+ LN+L  +QP+F   YDP+A+F+R LE YQA RP    P+ VYF++Y+ S+EEQ
Sbjct:  610 MYVYAHERK-LNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQ 669          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.700e-9
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            H ++ +++QA  ++ +++++ P+    YDP+A FVR +E +QA RP     L VYFM+YE+SVEEQ
Sbjct:  778 HVIMITYSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQ 842          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: Dna (repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.480e-9
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            H ++ +++QA  ++ +++++ P+    YDP+A FVR +E +QA RP     L VYFM+YE+SVEEQ
Sbjct:  105 HVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQ 169          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: DNA (repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.380e-8
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   41 VVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            V+ ++AQ ++  ++L+DLQP     YDP+  F+R LE Y A    D  PL VYFM+YE+S E+Q
Sbjct:  498 VICTYAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL)

HSP 1 Score: 58.5 bits (140), Expect = 3.260e-8
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 2
Query:   14 FESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            FE + S   +     +   +  +LQD QP F   YDPN  FVR +E Y+A  P     + VYFMLYE SVEEQ
Sbjct:  553 FEEIPSTSLITIQCYEDDANEQVLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VKU5_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:   80 ILQDLQPNFAASYDPNATFVRTLEAYQAGRP-LDRPPLVVYFMLYEQSVEEQ 232
            +L+DLQP F   YDPN  F+R +E Y+A  P LD   + VYFM+YE SVEEQ
Sbjct:  561 LLEDLQPRFIIMYDPNPAFIRRVEVYRAMHPELD---VRVYFMIYENSVEEQ 609          
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZZ46_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 2.130e-7
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 2
Query:   41 VVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232
            V+F   Q    + +L DL+P++   YDP+  FVR +E ++   P  + PL VYFM+YE SVEEQ
Sbjct:  581 VLFRTYQGEADMAMLNDLKPHYIIMYDPSPMFVRQIELFKVTHP--QIPLRVYFMVYENSVEEQ 642          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ERCC43.990e-3587.01domain-containing protein n=1 Tax=Ectocarpus silic... [more]
ERCC41.890e-3487.01domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
ERCC47.660e-1045.45domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
ERCC42.680e-947.62domain-containing protein n=2 Tax=Ostreococcus sp.... [more]
ERCC42.700e-942.42domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Dna3.480e-942.42repair endonuclease xpf n=1 Tax=Nannochloropsis ga... [more]
DNA2.380e-845.31repair endonuclease XPF n=1 Tax=Thraustotheca clav... [more]
ERCC43.260e-843.84domain-containing protein n=4 Tax=Mucor TaxID=4830... [more]
ERCC41.560e-755.77domain-containing protein n=1 Tax=Mucor circinatus... [more]
ERCC42.130e-743.75domain-containing protein n=1 Tax=Dimargaris crist... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9979contigE_fasciculatus_S2_contig9979:2530..3442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size235
Hectar predicted targeting categorymitochondrion
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842638.4989948-CDS-E_fasciculatus_S2_contig9979:2530..27031696842638.4989948-CDS-E_fasciculatus_S2_contig9979:2530..2703Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9979 2531..2703 -
1696842638.5113328-CDS-E_fasciculatus_S2_contig9979:3381..34421696842638.5113328-CDS-E_fasciculatus_S2_contig9979:3381..3442Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9979 3382..3442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9979.17962.1prot_E_fasciculatus_S2_contig9979.17962.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9979 2531..3442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9979.17962.1

>prot_E_fasciculatus_S2_contig9979.17962.1 ID=prot_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
RGPGVRVVTLSPRRGFLLRSGSGKPQHPPGPPAELCGFVRPQRDVRSHPG
SLPGRKAARPSPPRGVLHAVRAERGGAE
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mRNA from alignment at E_fasciculatus_S2_contig9979:2530..3442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9979.17962.1 ID=mRNA_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:2530..3442- (Ectocarpus fasciculatus EfasUO2)
AGAGGACCTGGTGTTCGAGTCGTTACTCTCTCTCCACGCCGTGGTTTTCT CCTTCGCTCAGGCGAGTAGAGTAGAGAAGAGAAGACCGGGTTTGCTCATG TTTAATGGCGGAGGAGGGGGTCCCGTGTTGCCGTGTTATGCGGATTTGCT GTGGTGGGAGGTATTTCCGGGGCCGCGAGGAGAGGAGCTGGTTGCTGACC TCCGCTGGAAAAGGGCGACGAAGCGGTCAGTCTACGACGTGCGTCGGCAC GGTGCGACAAAAGGAGTCCGCAAGAGAACAGCGCTTACGATACGGGCACA CACACAGGGAACTAACTTAGTGTAGATTACCTTCGATTAGAGGACCCAAG TGCGCAGGATGGAGATGGCGAGATGGTGGGACCTGCCACCAGCGTGTTTA ATGTGGTTGAGGTGGCGGGAATATGTCACACACATCCTCGTTGGTTTGTT GGCAATCCCCTCCGTTCACACGCATTCCATTACAAGTGGTTTAGAATGTG GAGGCAGCGGGAAAACAACTTGGCGACAGACCCTTGGGGCGTGTAGATAG CAGTAGAACAAGATGTCTGGCGAACAAACTTTATAATTGCATCGTCGTTT TTTTGCGTCTCCTCTCTTTTATTGCTTTTTCGAATCATTTTGCAATGTGT TGATGTTTGCCATAAGCTGTGTCTGCTCTTGTTTTCTGCCTTTCCTATGT TTCTCTTGCCTTTCTGTTATTTTTGTTCTTTTCGATCAGGCTCGGGAAAG CCTCAACATCCTCCAGGACCTCCAGCCGAACTTTGCGGCTTCGTACGACC CCAACGCGACGTTCGTTCGCACCCTGGAAGCCTACCAGGCAGGAAGGCCG CTCGACCGTCCCCCCCTCGTGGTGTACTTCATGCTGTACGAGCAGAGCGT GGAGGAGCAGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9979:2530..3442-

>mRNA_E_fasciculatus_S2_contig9979.17962.1 ID=mRNA_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:2530..3442- (Ectocarpus fasciculatus EfasUO2)
AGAGGACCTGGTGTTCGAGTCGTTACTCTCTCTCCACGCCGTGGTTTTCT
CCTTCGCTCAGGCTCGGGAAAGCCTCAACATCCTCCAGGACCTCCAGCCG
AACTTTGCGGCTTCGTACGACCCCAACGCGACGTTCGTTCGCACCCTGGA
AGCCTACCAGGCAGGAAGGCCGCTCGACCGTCCCCCCCTCGTGGTGTACT
TCATGCTGTACGAGCAGAGCGTGGAGGAGCAGAG
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