mRNA_E_fasciculatus_S2_contig9979.17962.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 135 bits (339), Expect = 3.990e-35 Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 2 Query: 2 EDLVFESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 EDLVFE L SLHAVVFS+AQARESLNILQDL+P+F YDP+A FVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ Sbjct: 754 EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 830
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.890e-34 Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 2 Query: 2 EDLVFESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 EDLVFE L SLHAVVFSFAQARESLNILQDL+P+F YDP+A FVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQ Sbjct: 845 EDLVFEPLPSLHAVVFSFAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQ 921
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC) HSP 1 Score: 63.2 bits (152), Expect = 7.660e-10 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 H V+ ++AQA+ +L DLQP YDP+ F+R LE Y A D PL VYFM+Y++S E+Q Sbjct: 499 HLVICTYAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU) HSP 1 Score: 61.6 bits (148), Expect = 2.680e-9 Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 44 VFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 ++ +A R+ LN+L +QP+F YDP+A+F+R LE YQA RP P+ VYF++Y+ S+EEQ Sbjct: 610 MYVYAHERK-LNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQ 669
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.700e-9 Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 2 Query: 35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 H ++ +++QA ++ +++++ P+ YDP+A FVR +E +QA RP L VYFM+YE+SVEEQ Sbjct: 778 HVIMITYSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQ 842
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: Dna (repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.480e-9 Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 2 Query: 35 HAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 H ++ +++QA ++ +++++ P+ YDP+A FVR +E +QA RP L VYFM+YE+SVEEQ Sbjct: 105 HVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQ 169
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: DNA (repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.380e-8 Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 41 VVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 V+ ++AQ ++ ++L+DLQP YDP+ F+R LE Y A D PL VYFM+YE+S E+Q Sbjct: 498 VICTYAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL) HSP 1 Score: 58.5 bits (140), Expect = 3.260e-8 Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 2 Query: 14 FESLLSLHAVVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 FE + S + + + +LQD QP F YDPN FVR +E Y+A P + VYFMLYE SVEEQ Sbjct: 553 FEEIPSTSLITIQCYEDDANEQVLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VKU5_9FUNG) HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 80 ILQDLQPNFAASYDPNATFVRTLEAYQAGRP-LDRPPLVVYFMLYEQSVEEQ 232 +L+DLQP F YDPN F+R +E Y+A P LD + VYFM+YE SVEEQ Sbjct: 561 LLEDLQPRFIIMYDPNPAFIRRVEVYRAMHPELD---VRVYFMIYENSVEEQ 609
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZZ46_9FUNG) HSP 1 Score: 56.2 bits (134), Expect = 2.130e-7 Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 2 Query: 41 VVFSFAQARESLNILQDLQPNFAASYDPNATFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 232 V+F Q + +L DL+P++ YDP+ FVR +E ++ P + PL VYFM+YE SVEEQ Sbjct: 581 VLFRTYQGEADMAMLNDLKPHYIIMYDPSPMFVRQIELFKVTHP--QIPLRVYFMVYENSVEEQ 642 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9979.17962.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9979.17962.1 >prot_E_fasciculatus_S2_contig9979.17962.1 ID=prot_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp RGPGVRVVTLSPRRGFLLRSGSGKPQHPPGPPAELCGFVRPQRDVRSHPGback to top mRNA from alignment at E_fasciculatus_S2_contig9979:2530..3442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9979.17962.1 ID=mRNA_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:2530..3442- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9979:2530..3442- >mRNA_E_fasciculatus_S2_contig9979.17962.1 ID=mRNA_E_fasciculatus_S2_contig9979.17962.1|Name=mRNA_E_fasciculatus_S2_contig9979.17962.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9979:2530..3442- (Ectocarpus fasciculatus EfasUO2)back to top |